Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0195300 |
| Transcript ID | LotjaGi5g1v0195300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RmlC-like cupins superfamily protein; TAIR: AT4G10300.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9ZFV5|EUTQ_SALTY Ethanolamine utilization protein EutQ; TrEMBL-Plants: tr|I3SX59|I3SX59_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0195300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49087643..49090504) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAGTAGATGAGAAATGAGTGGACAAAATAAATCAAAAGAATTGTTTTTTTGAAACTGAGGAAAAAATCAGAGATAAA TACATAATACTTGTCAAGAATTTAGGCCCAATGCAAAGCTAAAAAGGCTTCATTTTGTTACAATGGCATCAATATGTGTG GGTGCTTTACCACTGAACCAGGCTCTACTTCTCTCACAAACCAAAAACTCAGCTGCTACCTGTGTAACTTTTCCTTCAAC AAGGGGGAAACTAGGTAGGCGTTCTCACTTGGTTGTAAGAGCAGAGAGTATGAGTACTGTCATAGAGAAACAGGGCATCA AGATTGAGAGGAACCCTTCTGAGTCCAAGCTCACTCAACTTGGTGTCAAGCAGTGGCCAAAGTAAAACTCCATTTCATTA TTATCTTGCCATTTTAATTTGTTTTCCTGTTATTTCCCCCCTTTTGATTACTATTATTCTGATGGGTTTTTTGTTCTCAT ATTTTTCTTATGGGGTTTGGATTAGGGTTAAAAAATCTTTTTTTTTTTTTTTTATTTTGATGAAGGAATCATGCAGTGTG CCTAGGTTTTCATGCCTTTTCTCTCTGAGGTTATGCCATGGAATTCAGGCTGCTTCTGTTAATTTGTTTGTACTATGACT GAAGAAATCATGGGAGACAGGGAGATGCATATTTGTGGTTCTAAACATGAAAGAGTTATAGATGCATGCATTTAGTGACA AGTATTTGTCTGAACAAAAAATCAATTTTGTTAACAAAAAATCAATTTGACAAGGCCACACTAGACTCATTGATTTTAGT GATCTGGTGTGGTGATGGAATTGCTAGTGGTAATTTTAATTCAGTTTAGCACCTTTTACCCCGTTTCCCATTACCATCTA GTTTCCCCAGGCAATTCTATACGAGCAGAAAAAAAATGAGCTTTTCTATTTTCTAATTGCTAGCAACTTTATTTTGTGCA ACATTATCCATGTCCCTTGGGGCCATGGCTAACAGGATGAAGATATTTTGTCTCTATTTAGTGTCATATTCCCAGTCCCA CCAATCAAATTGTGTCATGTATGACAATTATAACCTTACTTTAGTGATTTTTAAATGACATTACACAATTTGATTGGTAG GACAGGAAAGCGGACCAAATGAGAACAGAGGATTTTGGTCCTGGTTAACAATGATGTTAACAATGGTTTGTTAGCAAGCC TCGATTTACGATCGATAAGTGTCAAACATAAAGTTTTGAATTGTTCCTAAACAATATTTTGGGTCCGGCTCCTCTAAAGT GTAAAGTAAGTCATCACATCATTGATTGGGTTGTTATATTGACGTTTCAAATTAGGTAATCACTATTAATGTCATGACTT ACCTTACCCTCTAAATTGATATCTACTCACTTTAGAGGAGCCAAGTTCCAATATTCTGTCCTCAGCTAGACAACTGAATC AGAAATACTGTAACTTAGTGATGTCCTCAAGTTATTATGTTTTACTCAAGACTAATAATCAACAGTGGTGAATAAACTTG TGAACTTATCTGTTTTAGTTTCAATTGTATTAGTTTAGTTTATTTTTCTTTGCTAGTTTGCTCTTACAGCTGGTTGCTTT TCAGGTGAAATTACAATGTAGCTATCTTTTTAATTGGTTCTATACTTGCATGATACAAATTTTCCTTCTTAACTGTTAAC GTTTTAAATTAAATGTGTTCTGTTTTTCTTATTTTAAATGCATGCCCTCTCTGACTCTGTGTATCCACAATTGATGCAAA ACAGATGGGGTTGCCCTCCAAGTAAATTCCCATGGACATATGACGCCAAAGAGACTTGCTATCTTTTGGAAGGGAAAGTG AAGGTTACTCCAAGTGGGGCAAATGAAGCAGTTGAAATTGCTGCTGGTGACTTGGTTGTGTTTCCAAAAGGGATGAGTTG CACTTGGGATGTGTCTGTTGCTGTGGACAAGCACTATCTATTTGAATAGAATCCTACAAGAGGTGCTTCATGAATGAAGC TGAAGGACTTTCATGAATTGATTTCGCATGTAAGTTTGGATGTAATAGAACAACTAACAAAGACATAATAAAGTGGTCAT TAGCTATTGTGGATGAAGGTGTTTTTCTTACCTTCTGTTTCTGTCTTGTGCCTCTTGCTCCCTTACCCTCCCCATTAACT CCTTAGGGATATATCTCTACAGACCACATTGAACCAAGAGTAAACCAAACTAGTGAAAGACACCAATCTTTCACTCAAAA CTGCATTAGTGTATAGATCATTTCACTTATATACTACTCACCACTTTCTTTTTCATCAAATGAGACACTAATTATTAATT TACTCATACTAGAATTCTCAAGGTTTGAGATATTGCGGGCTTCAAAAATTATCATACAATACTATATAAAAGTTTGAATT AAATTTACGTCACAAATATTAAATTAGGGGAGAATACAAGTTTTAAAAGTGAGTTTGGAATATTATTATATAATAAAATA CTTAATTTGTTTAATTATTGTGGTATTTTTATTTGTATTGTAGTAAAGGTGAGAAAATAAAAGTAAAAGCAAGAGTGTAA AATGTAATTATGATCATGAATTTTTTTTATATCAACTTGTGTCTAAAATGGGAATAGATTAATAATTTCAAGATTTGCAT TTTCAGTAATATATTGTATTTTTATATCAAATCTATAACCTCACGTTAAACTTTTTGGTAAACCACTAAAGAGGGTAGAC ACGCAGAGTGAGAAAAGAAGAAAAGATATATGTAATATATGATGTGATGTGATAAGATGTGAGAGATAAACATAAAAGTT GAGAAGAGAAAAGTAATGTATGTGATTTTGGTAAATCATCATGTAGACACTCAGAGAGAGAA
CDS sequence (LotjaGi5g1v0195300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAATATGTGTGGGTGCTTTACCACTGAACCAGGCTCTACTTCTCTCACAAACCAAAAACTCAGCTGCTACCTG TGTAACTTTTCCTTCAACAAGGGGGAAACTAGGTAGGCGTTCTCACTTGGTTGTAAGAGCAGAGAGTATGAGTACTGTCA TAGAGAAACAGGGCATCAAGATTGAGAGGAACCCTTCTGAGTCCAAGCTCACTCAACTTGGTGTCAAGCAGTGGCCAAAA TGGGGTTGCCCTCCAAGTAAATTCCCATGGACATATGACGCCAAAGAGACTTGCTATCTTTTGGAAGGGAAAGTGAAGGT TACTCCAAGTGGGGCAAATGAAGCAGTTGAAATTGCTGCTGGTGACTTGGTTGTGTTTCCAAAAGGGATGAGTTGCACTT GGGATGTGTCTGTTGCTGTGGACAAGCACTATCTATTTGAATAG
Protein sequence (LotjaGi5g1v0195300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASICVGALPLNQALLLSQTKNSAATCVTFPSTRGKLGRRSHLVVRAESMSTVIEKQGIKIERNPSESKLTQLGVKQWPK WGCPPSKFPWTYDAKETCYLLEGKVKVTPSGANEAVEIAAGDLVVFPKGMSCTWDVSVAVDKHYLFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 39 | 147 | 109 | 8.4E-61 | – | |
| PANTHER | 39 | 147 | 109 | 8.4E-61 | – | |
| Gene3D | 47 | 146 | 100 | 2.6E-37 | ||
| SUPERFAMILY | 68 | 146 | 79 | 1.57E-15 | ||
| Pfam | 71 | 144 | 74 | 4.7E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0195300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…