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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0197900 |
| Transcript ID | LotjaGi5g1v0197900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit Tim21; TAIR: AT4G00026.1 import inner membrane translocase subunit; Swiss-Prot: sp|Q1G3L1|TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit TIM21; TrEMBL-Plants: tr|A0A072VM55|A0A072VM55_MEDTR Import inner membrane translocase subunit TIM21, putative; Found in the gene: LotjaGi5g1v0197900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49442718..49450380) extracted from Lotus japonicus Gifu genome v1.2.
GGCGGCGCCGTTTTGAAGTGAAGTAGTGTCTCTGAACCCTCTCTTCAGAAGACAGTCTCCGTTGGTTCCAGTTTGTGTTT GTTTCTTCGCCGCAGACAAACATGTTTCGCATTCGCAGAATCCTATGTCATCGTGCCGCCGCAGCAGCATGGACCCGCAA TGCAGCCTCCGTCTCCGAAACCCGTTCTCTCCTTCACCCTCCTCTTCCTTCCTCCCTAGGTTTCTACCCCTTTCAATCTC ATGATGTTGCACTTGTTTGATTATTCTGTCACTGATTTTTCTTTTTTCTAGATGCAGGAATCAGAGAAAACCATAGATCA CCCTCGTTTGCAAGGTTCCTTTCATCAAGAGCAAAACGTGAACCAGGGCAAAGTACAGAAAAGGTTTTCACTCTAGTGTT TATGATTTTTTTTGAAAAGCTCTAGTGTTTATGATTGTTTTGTTTTTTATCATTAATCTTAATTTGGGTAGGCTTAATTT GCTGATTTTAATCCATGAATAGTGTTTTGTTATCGATTGCTTCAGAAAAAAATTTCCCTTTTAACTTTTTGTTATGTGGG CATTCACTGTGAGAATTCATGCTGCATTAGTGTTTTTTGCCAGTCCAATTTGATACAAGAGTAGCGCGGTTGATTATAGA AAAATATGATTTTTCCCTTTTTCTTGTGTCCGGGATCCGTAGAATGACGAGTTCTATCTTCTATGCCCTTTTGGTTTGGT GAAATTTGCAATTAAACTAAGTGTTGTTTTCTATATGCTTTTTAGACCAAAAAGGAAATATCAAAGGTTGAGGATACCTT TGATGATGCTCCTACATATCATATTCCAGAGAAGCCAGTAACGTTTGTAGAGGGAGCATCCTACAGTGTGATAATTCTTG CTGGGCTTGGGGTTGCGGCTGCTGCGGGATATGCTGTCTTCAAGGAGCTTATATTTCAACCAAAAGAGTAAGTTTAATGT TCTCTCACGATTTATGTTATATAAAAAGAAAATGCTAGATAGCTATAGAACTTTAACTAAATGAGGCATGCTTATTGATT ATTGAATCTTGGGGGGACGAGTGGTCCTTATCACCTTGTCATACTCGAGAGTGACCCTGATTGTTATGTGGTAACAGGTA CAAGATCTATAACAAGGCTCTCAAGAGAATTCAAGATGATCCTCAAGTGAGTGAAGTTCTACTTTCATATCCATTTTCCT GAACACAAGAAAAACCACAATAAAGCAATCCATGCAACGGAATTTAGATGTTTGAAATATTCTGGCCTAGATCCTCAAGT CTGTGTTGGTTGAACACGGTGGCGGACCTACCACAGGGCTTGGTAGGTCCAATGCCCTGGCTCAAAGCAAAAAAAATAAA AATTTCTTTGGACTAGATAGGTTTTTTTGCTCCAAAAAAATTTAGAGAAAAGACAATTTATAAGGAAAGACAAAGTTTAG GGACTTAATCATAAAATTGCCTAGGCTTCCTAAAAATTCTAGTTCCGCCACTGGTTGAACATGAAATTAAGCTGTACAAA AACAACACTATTGGGTGATAGAATTGCTTTCAAACATATTTGACAGCTTTGAATGGCTAACTTTTATGCTTTAGTTTTGT TATTAAGCTAGTATTAGTGCTCTGACACTGGAGTGAAAATGTGTTAGGGTTCTAAATTTTAGTTAGTGGGCCTGTTGTGT TTGGACTTTGGACCTAGGTTTGATTTTATCTATCTCTATTTGTTAGTTTTAGTAAGGTTTGGTTTGGTAATGAGTCTGTT TTTATTATTTGAGCTGTGCCTATGTTGGGCCAGAGTCATTTGCATAGTAGGGTTAGTTTATCATAAATAGGAGAGTAAAC GGCCATTTTGGTCCTTGATTGTGTTCACTTATGATGAACCAGTCCTCATATTTTGGAAATGGTCTTTTTTCATCCCTGAA TTTGTCGTCGTCGGTCAAATTAGTCCTTGATTAAGTTTTCCGTTGGTCCCTCAGACGGAAAAGTCCAAATATCACCATTT TTGCCACATTGGCTTGACACATCATCAATGACTCACATCTTATTATGTCAATTTAGTCCCCTAGAAAATAAAAATAAAAA AATTGAATTTATTAATTCAAATTACAGAAAGTCACTTAATCATCAATTCATCATCTTCAACCTCATCTTCATCTTCATCC TCAATCTCACCTTTTTTTCATCATTTCCAAAAAACAAACACAAAATCCCCAAATGTTCATCCTCCATCTTCTTATTCTTC ATCTTCTATAATTCTAAATCTTAAAAAACCCAAACCCGGAAATTTAAAAAGCCAAACCCAACCTAACCCAGAAATAAAAA ACCCACCCCTAACCTAAATCCCAACTCCATAATACATGGCCACCCCCATCCATGGATCCAGTGACGAGAGTTTGAGATTG AAATTGAGGAGACGCATAGCCACCTTATTTCTTTACATTATAATTTTCTTCACAAAATAAAAAGTCTGCAATTGTGCATA CATGTAGTCATTGTAAGAGAATCTGGGTGTAAATTTTGGATAATTTGAATTCTGGGTCTGGGTAAAGTTTCGATCTTTTG TGATCTAGATGATGTCTTCTGGGACATCTTCGTATTGGTGCTACAGGTACAGTCAGTTTATGAGGGTGTGGAGACAGGAC ACGGTGGCTTGCCCCGATTGCGACGGTGGGTTCATTGAAGAGGTTGAGCATCCGGCGGCGCGTTCTGCCCACGCGTGATT CTTCTTCCCTTTGATGTCGACGACGGCACCAGCAGTGTCCTCTCCTCTGCGGTTCCAAACGGAGCCAAGGTCGCTCTATT CTCAGCGATGGCCACAGTTCCAAACGGGTTTACTCCTTTCAGCAATGACGTCGTTGTACTCTTCCAGCGACGGCGGCGAT GTACTCCTCCTTGGACGTCGTCGACAAAAACGGCACCAAGTTAGCCCTTTTCTCCCCTCGGCGACAACGGTGATTCCTCT CACTACCTTTCACCACCACAGTTCTCATACACGCCCACCACACTGGTCTCTTCCCCCTTCTACTTTTCCACCTTTTTCTG TTCTTCTATCACTGGGTTGTTGGGTTTGATAGGGTTGGGGGTGGCTGGATCTGGGTGCTTCGATCTGAATGGGGCTGGGT TTGAATTTGTTAAAAATGATTTGTTTTTGGAAAAATTAATCTTCTATCATCTGTTGTATGTGTTTCATTCCTCATAGATT CACATTCTTAGCTTTTAATTTTCATCAAATTTTACGTTGGCACACTGTTCTTCTTCCACTGTGATTGTTAGCTTCTAATT TCATTAATTTCTATCAATAATCTGATTGTTATGCACACTAGCCTTTGCTTGATTTTTCCCATTTTTATTGGTTTTCATAT TGTTGTACCGTTCTTGGTCATGCGTTCTTGGTTTGTTATTGATTTTTTTAGAATTTCTTTACTGAATGGTTATGATGAAG ATGTTGTGAATGAAGGTGATGAAGATGTTGTGAATTTATTAATTCAAATTTCAGAGTTTTTATTTTTATTTTCTAAGGGG ACTAAATTGACTAAGGTTACAATCTGAGTCATTGACCACGTGTCAAGCCATGTGGCAAAAATGGTGACATTTGGACTTTT CCGTTTAAGGGACCAACAGAAAACTCAATCAAGGACTAACTTGACCGACGACAACAAATTCAGGGACGAAAAAAGACCAT TTTCAAAGTATGAGGACTAGTCCATCATAAGTGAACACAATCAAGGACCAAAATGGCTGTTTACTCTAAATAGGATTACT CTTAGGGTATGATTTGCATATTAGATTTGTAAAAGGGTTTACCCTTGGAAGGGATTCTCCCTAGTCCCTTCAAAGAAAGT TCTCCTTCTTGTGAATCCATTAGGATTGTCTTTCCTATCCCTCTCTTTATCTCTTCTCTCCTTGTTTTATTTTCCAGTTT ATATATTAAAAAATACCAAAAAATATTCCTTTTCTCCTCCTTTTACCTTGTGGCTGATGTTAGGGTTTCGAAATCCTAAC AATTGGTCTGACCTTGCGGTTCCTCTGTCTTGCTGTGCTAGCCATTTGCCGCCGCTGCCAGCCACCACTGGCAGCCTCCA CTGTCGCCACCACTTGCCGAATACCCAGCCACCACCATGCACCTTGCTGTTCATCCAGCCACCACCATCCACCATTGTCG GATTCCCGCACACGCCCAAGCAGCACCACCGCCGCACACTGGTCATTCACGCACGGCTCATCATACGCTTATCGTTTATA CACGTTCGTTGCTGTTCTCTTCCCAGTTCTTGGCTATAATGGAGACTTGGAAGGCTACTGCTGATAGGGACATCACTGAT ATCAAGAGAATGATGACTGATATAATGCAGCAGTTGAAAAGGTTGGAGCATTCGAAGAGGATGGGTAAGAAAAATCCAGA ATTGAAACTGGAGAATATTCCTCTTCCACAGTGTCAAGATGTTATACCTTCATACATAGCATTGTCCCTGATAATGAGAA AAACAGATTTAGCTTTGTAAGTTTGGGAGCAACTTTTGGAGTTAATACAAGCTATGTTAGTGGCCCAGCAAGCACAAAGT GTTCTACAGCTCCTTCCAAAACATCTCAAGATTTTGAAGACAGTGTGGAGGAGCAGGACGCAAGCAGTCAAAATGCCGTG ATTACTTTTGAGTTGCTTTGCCGACTGAAGGTGTCAAAAAAGGTGCTGCCATTATGCCCCACACCTCCAGTATTAAGCTT TTTGGGAGCATAGCCTCTATGGTAGATGCTCCGATGTGAATGAACTTGAATGCTGTTAAGAATGAAATATTTGGCAATGC AGGGACTTCTATCACTGGCCTTAGTGGATGAAGACGACCACTCGACGAGGAGGGGTTAACCCTCAATGCGGATGGAGGTA TAGGCCCAAGCTACGCGGACACAACTGCCTCCTCCAATGCCGCCAAACATGGACAGTGGCGCACTTGCTGATTTGGGCAT TCACCCTGTTTGCCGCTCACAATGAGATCTGGGAGGAGATTTTATCTACCATGAAGCGTGCATAAATTTACTAACTCCAA CCTTGAGGACATGGTTGAATTTTTTGTGGGAAGTATTGTTAGGGCTCTAAATTATAGTCATTGGGCCCGTTGTGTTTGGG CCTAGGTTTGATTTTATCTATCTGTATTAGTTAGTTTTAGTATGACTTGGTATTGGGTTCGTTTTTATTATTTGAGTTGG GCCTATGATGGGCCAGAGTCATTTGCTTAGTAGGGTTAGTTTAGTACAAAAAAAAAAGAATACTCTCCTTAGGTTAGAGT GTGATTTGAGTATTAGATTTGTAAAAGGGTTTCACCCTTGGAAGGGATTTTCTCTTGAAAGAAGGTTCTCATTCTTGTGA ATCCATTATGTTGTTTTTCGTATCCCTTTTTCTATCTCTTTTCTCTTCTTGTTTTATTTTCCCGTTTATGTATTGAAAAA ATACCAACAAATATTCCTTTTCTCCTCCTTTTACCTTGTGGCTGTTGTTAGGGTTTCTAAATTATAACAAAATGATAGAT ATTTTGAAGACTTGTAAGATTTTATAATTAACCATGGTGACTTTCATGTCTACCTCTTGTGTGCTAAAGTTACCAAAGTT CCATATTTAATTTGAGCATCTCACAATATACAATAAGGCACTATATCCTTACACTTTTTAGAAATTTAAATGATAGTGGA GAGAATGCTTGCATTCTTTTAATCCTGTTGGATAAATAAATTGCGAATACCAAAGCACTAAATCTAAGAATGATTCACAA TTTTATTTTCATATTGAATAGTTATTGATTCTCTACCTGCTCATTGTTTTTGTTATACTTATACTGGATTTACTTTTCAC CAGGTCAGAGTGAGGATTGGAAACCCAATTACAGGTTACGGTCAAGAGAGTAGAAATCGTGCTGCTCGCCAAAGAATTCC TCACAGGGTATGGACTGATGAAGACAATGTTGAGCATGTAGAGGTAATTTTTTTGGCATTCAGTCAATTTTATTTGCAGA TGGCCAGATGTACACTCATTTTGTCAGAACTATTTTGAATATGCCCCTGGGGTCAACAATCTTTAAAAAAGGGGGGAGGG GGTAGGGGGTAAAGATGAGAGAGAAAATGAGAAGGGAAGGTATAGGGAACTTCATTGGGTACATTATTGTATTGTTTCAA TGTGATATTCAAATTCTTAAAATTTCTTTTGTGGTGGAAGATACTTCTTCTTGGCAGTCGTCATTCCTACTGATAATATG GTTCTACTTCTCACTAAAATATGTTTGTTTGGGTTACAGGTGAATTTCTATATTCGGGGCCCTCATGGACATGGAAAAAT ATTCGCAGAGATGTTCAAACCAGCTGACAATGAATGGCAATTCACATACTTGATTGTTGAGATTAAAGCACCCTCTCCAG CACAACTAATTCTAGAGTCATATATTCCAGCTTACAATGCAAACAAGTAGCATAGATGAGAAAAGGTTTTATTCTGCTCC ATTGATTATTCTGTCAGTAGATACCAGATAGTTATCAGTGTCTGTTTGACGTTGAGGTCGTACTTTTCTTGACACAAAAT TGTTGGTGGTAACTCTCTACTGCACTCTTCTTCTCACCTCCCTCAACCCTGGATAAGAAAAAGTTAGAACATAAAGAAAA TGAAGGAAGTCCGAAGTGGCAGAGCTTCATGTTAGCAACTTAATGACCTTATGTTCTGCACTTGCAATTGGCTTGTTGAT CTGCTATAAATTTTAGGCATGCAATATCATTTTTTTCGACATTGCACTCAATCCTTTTCCTTCATGAATGGCCCACAATC CCAAATATTTTCACTAATGCTCTAGCTTAGATTTGCTTGTTCATGAATATTGGATTATAGATAGGCTCTGGTCAATACTT GTGTGTTGTACGGTTGTACCTGTCAATGTTGCAAAATATAGTCTGGATTGTTTTTGCTGTCAGGACTAAGGAGAAATTCG TTTTCCTTGGCGGTAATCTAATTATATTTTCATGCACATAAATGGAGCTGGATTAATAGAAAAAAAAATCTAATTGATTA CTTAATGCAGGTCTTTGATATTGGTCCACTACTGGAGGCTGCATTTTTCAGCTATCAGCATTGACCACCTAAGCCGGTCC GTGTTCCAAAAGGGATGAAAATTGAGAGAAAGAAAGACAATTGAAGAAATAACATAATATGGGAACCTGGATCCCAAATC TCAGGTTCAGTTCCTTTTTTTTTTTCTTTCATTTAAAACCTGCAGATGTGAGGAACAGTTTTGGGCTAGGATCTTAGTAA CGATGACCGCTGCGATTTGTTTGTCTTTCAGAGCAATTGAGAATGCCATGTACTTCTAAATAATTTATTATTATTAATGA CTTCCATACAGCTTGGTTTGTGAAGCACATTGAATAGCTGGAAGTTGGATGCTAATTTGTTGAGGATGAATACGGGATTG TAGCCAAAACGAAAATTGATTTGGATCATGAGTTTTTTTTTTGTTATTTTGTTTTTAAAAAATTGAAAGATCATATAAGG TTAGCATGCACTTGATGACTTTAGACAGATGAGTGTTTGCATTGGTAAATGATTAACAGTAAGTGGAGTGTTGATAACAC TTCCTTTAAACTCAAGTTGGTCATTTCAAAGTTATATATATTTTTTATTATATTAGTTCTTTG
CDS sequence (LotjaGi5g1v0197900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCGCATTCGCAGAATCCTATGTCATCGTGCCGCCGCAGCAGCATGGACCCGCAATGCAGCCTCCGTCTCCGAAAC CCGTTCTCTCCTTCACCCTCCTCTTCCTTCCTCCCTAGGAATCAGAGAAAACCATAGATCACCCTCGTTTGCAAGGTTCC TTTCATCAAGAGCAAAACGTGAACCAGGGCAAAGTACAGAAAAGACCAAAAAGGAAATATCAAAGGTTGAGGATACCTTT GATGATGCTCCTACATATCATATTCCAGAGAAGCCAGTAACGTTTGTAGAGGGAGCATCCTACAGTGTGATAATTCTTGC TGGGCTTGGGGTTGCGGCTGCTGCGGGATATGCTGTCTTCAAGGAGCTTATATTTCAACCAAAAGAGTACAAGATCTATA ACAAGGCTCTCAAGAGAATTCAAGATGATCCTCAAGTCAGAGTGAGGATTGGAAACCCAATTACAGGTTACGGTCAAGAG AGTAGAAATCGTGCTGCTCGCCAAAGAATTCCTCACAGGGTATGGACTGATGAAGACAATGTTGAGCATGTAGAGGTGAA TTTCTATATTCGGGGCCCTCATGGACATGGAAAAATATTCGCAGAGATGTTCAAACCAGCTGACAATGAATGGCAATTCA CATACTTGATTGTTGAGATTAAAGCACCCTCTCCAGCACAACTAATTCTAGAGTCATATATTCCAGCTTACAATGCAAAC AAGTAG
Protein sequence (LotjaGi5g1v0197900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRIRRILCHRAAAAAWTRNAASVSETRSLLHPPLPSSLGIRENHRSPSFARFLSSRAKREPGQSTEKTKKEISKVEDTF DDAPTYHIPEKPVTFVEGASYSVIILAGLGVAAAAGYAVFKELIFQPKEYKIYNKALKRIQDDPQVRVRIGNPITGYGQE SRNRAARQRIPHRVWTDEDNVEHVEVNFYIRGPHGHGKIFAEMFKPADNEWQFTYLIVEIKAPSPAQLILESYIPAYNAN K
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 98 | 77 | - | – | |
| PANTHER | 39 | 236 | 198 | 4.0E-89 | – | |
| PANTHER | 39 | 236 | 198 | 4.0E-89 | ||
| MobiDBLite | 52 | 72 | 21 | - | – | |
| Pfam | 97 | 222 | 126 | 8.6E-23 | ||
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 99 | 120 | 22 | - | – | |
| Phobius | 121 | 241 | 121 | - | – | |
| Gene3D | 127 | 234 | 108 | 4.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TIM23 mitochondrial import inner membrane translocase complex | The protein transport machinery of the mitochondrial inner membrane that typically transports proteins that possess a matrix-targeting N-terminal presequence. The TIM23 complex contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor. | ||
| Biological process | Protein import into mitochondrial matrix | The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. |
Expression pattern of LotjaGi5g1v0197900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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