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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0199000 |
| Transcript ID | LotjaGi5g1v0199000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT4G24060.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6; TrEMBL-Plants: tr|B3IX44|B3IX44_LOTJA Transcription factor C2C2-Dof; Found in the gene: LotjaGi5g1v0199000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49662494..49666968) extracted from Lotus japonicus Gifu genome v1.2.
TGATAAAGTTGGAAAAGGTGAACCATTCATTCACATAGACCGCCCTACACTCACTAGCCTCTCAAAAAACATTCCCTTTT CCTGCTTCAGCAAACGTGTCTCAACTAAAATACAAAAGATTCCATCATTTCTCTCTCATTCACTGCTTCAACTTCATTCA AGTACACATAGCCTGCGTTGCCTTCATCTTCCATCCTTTGATCCTATTCATCTTCATCAATCCATGGACACTGCTCAGTG GCCACAGGTGATTAATTAAGCTTATTTCTTCTTACCATTTTCCCATCTCTATTGCTTCAATTTTCATAACTTCATCTTAA TTACATGATGATACCTTTTGGATACTTTCTATCTCCTTTATTTGGATCCTGGTGCAAGTGATGCATGTCCACAAATCAAA ACCTATCAATTAACATGTATATGCCTTTCACTTTTTTTTTGCTTATAAAAAAAAGACATGTATATGCCTTTCACTTTCTG ACTTTTTCATTTGCTCTTTCCATAAAGAACTTAAACAAGTTTCAATTTCATCTTTATTCTGCTCCTCTTTTTCATTAAAA AAAATCACAATTATATTCATACATAGCTTCTCACCTCTTGCTCCTGAAAAATGTAAAGCAGTTAACTAGCCTGTTTGATC TGTTGTTTTTTCTTTTACAAGTTACAATTGATATTACACCATAGGGTCTAAATAATTTCATTCATTTAAAATTCATATTT GTTTGGAATATTTGAAGGAAATTGTGATGAAGCCAATTGAAGGTATTGTGGTGACAAACACATGTCCAAAGCCTGAATCC ATGCTGGAGATCAAGAAGGCAAGGCCACAGAAAGAAGAAGCTGTGAACTGTCCAAGGTGTCACTCAATCAACACCAAGTT CTGCTACTACAACAACTATAGCCTCACTCAGCCCAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACTGAAGGCGGGT CCCTCCGAAACATCCCAGTAGGAGGTGGATCAAGGAAGAACAAGCACAGATCTAATTCTGTTATTTCTACACCTTCAACA ACCAGTAATAAGAATCTTCCTGATCTGGTCACACCAACTTGCACTCCAAACCCTAAGATTTTCAATGATGGCCAAGATCT GAATTTGGGGTTCCCAAAAATCTCTGAATTGGTTCATCAAAACAACAACACTTCTTTTTGTTCAACTACTACATCTTCAA CTTCTCACCTTTCAGCATTGGGGCTTCTTACTGGGATCACTTCTTCTTCTTCAAGTTCTAGGGGTTTGCAATATTCTTTC ATGCCTGTACCAGTTTCAGCTGATCCAAACACTGTTTACACTACTTGTGGGTTTCCTATGCATGATTTTAAGCCAACCCT GAATTTCACTCTAGATGGGAATGGAAGTGATTATGCAAGTTTTCAGGGTCATGTTCAAGATACAAGTACTGGGAGGGTTT TGTTCCCGTTTGAGGATTTGAAACAGGTGTCTAGCACCACAGCAAGAATGGATCACAATAATGATAAGGAGGTGCAACAA GGAGATTCAGCTGGGTATTGGAGTGGAATGTTAGGTGGTGGTGGATCATGGTAATTAAAGAAAGGAAAGTCATAAAATAT TTAGTTTCTTAATTACTCTTGTGTTCTATTAATATTTTGTGAATTTTACTTTTGAACCTTTTTTATGGGTTTAATGAGTT CCTTTTGGGGACTCCATCACTGGTTTGGATTTCTTCATAATTAACTAGCTAGCTAACAGCTGAAGGCCATGAATTATACA TGAGTTTCCTATATATCTAGCTCCTTTTCATTTCATGAGCAGTGGGGATTTCGAAATGAAGCTTATTTTCAGCAGGTTTC AAATTCTGTACTCAGATTGCATTTTATAATGTGTAAAGAAAGAAGAGATATCAAGTTTAACCCCATTTTTTAAGGGTTGA CAAGTAGCAAGCTAGAAGTAGAAGGGGGTCAGGTTAATTAGTTATTGCCCTTATAAATTTATATTACATGTGCACTTAAT TTTTTCTAGCCCCCTAATCTGATTTGTGATCGACCCGAGCTCAATAAATCCATATAACAAATTTTACTGTTAGGTAATAG ATTTCGTTGTTATTGTTATATACTTAGTTTTTTCTTCCCTCCTAATTTAGTTTATGTTCTGAGTTTAATGATGTACTGTA ATTCATACGGTTGATGAGCTCACTTAGTGGTTAGATGAGACTTTTTGTTCTTGTTATTGTTGTTGTGAAGATAATTTCTT CTATCGGAGAAGCAGGCTACTACAATATAGTGTGCCATCATCAATTTATTGTTTGGTTTTCTAGCTAGTACCAGATTCGA GAAATGTGTATAAAATGTTGAAGAATACTATATTGTATAAATTGGTATATCAGTTTGTTAGGAGTGTGTGAATCTATGTG ATCTATGGACTATGATTTTCCTTGTTTTATATACATATCCACCATTCCCTCTTCCTTTCTTTTTGTGCCATGTTTCGGGG TGTCAGTTAATTGCAGCAAGAAAAGCATGTCACCATGAAGCTAGCTAGCTAGCAAATTACTACCAGTACTAGCTGGAGGG GAATAAAAGCCAGGTGAGATTTCTGATATCTTCACGTGACATTGCAATAAAGTAGTGTTGAAGATAAATGTTGATTTTAT TATAGCCATTATAACTTTAGACTATAAAGCTGCCTCAACCAATAAAGCTTACCTACTATAGTTTCCATAATAACACATAG TATAGTAAGATGAGTTTTGTAATGCATAATAAAGTGTATTAATAAGGTGTGGTACAATAATACAAGTAATAGATAATTGA ATTTTTTAAGGCGTATACTTTAAACATACCCTAAAAATCAAATCTTAAAGTATTGAAAATTATCAGCTGTGCGTTATCTT AAAAAGAAGAAAAAAGTGAAATAGATCTTTGAAAATAACAATGTTTAGCGCTAATACGTTCGCCATTATAAAAAAAAAAA TTATGATTCCTTAGGTAGTGATCACGAACTTGTGAGCACCAATTATTTTTAGAGACCAATTTACCATTTTCTCTTTTATA ATTGAGACTTGAGACTTGAGACTTGAGAGTGTTGAGTGGGAAAAAAAAAAAAAGAGTGGGGTCTAGAGTCACTCATTGTC TCTCACACACATTGCCACCATTATCGCGAACCAATTATCATTGCTTACGTACCACCTCTTCTTCCTTTGTCTATCATCCT GATTCAAAGATGGAAAAAAAAAGAAAGATTGACAAGGATCTGACACATGTGTTATTATGATTTTCTTGCTTGTGAGGGGT CCGCAAACATTCCCTCTAGGCATGTGTGCTAAATAAGAAATGATACACAGACACTCAGTCCCACTAGGTTAATTGATCGA TCCATGTACAGTCCACTCTTTCAACTCCATGACCCACTCTTTTCACTTATAAACTTGTTGTCTTTTTCTTCTTATTTTGC GCTGCTGTAAGCCACTTTAATTTTAAATTATTAGATGGTTTTTTAAATCAGTTATGATAAATTGACATGTAATTAGTTCA CACTTTAGATACACCACATTCTTTTATCTTTATTTTCTTATCGCCACATTATATATCACATTCATATTGTATTTCTATTC TTTTCTTATTTAAATGTCTACACTTTGGTGTTTATCAACATTTCCTTTTTTAAGCTTTAGACATTGTTAACGGAAAAGTC TAAGAAGTTAGATGGTTAGTCGGTCACCACAAACCTCTCCAGCTAGCTTTGATGTGTATTTCAGTGTGTGCTTAAGTTTT AGATTTCTTTATGTAGAAAAAGAATTAAGAAGGGTTAGCTATGGCAGGCCTTTACTTCTTCAGCCATGGTGAAGTAGTCG TTCCTCCATCTTGGGCCAGACGTTAGAGATTTGTCTCCTCCTTTCCTTGACACTTTAATGGCGAAGGAATTTTGACATAG TTCGAGGAGAGGATTCTCCAGGCTATTTACAGCGGAATGACCAACTGATAGAGCGGAATCCCAAATAGGACACAACCCCA AGACTTGAGCAATTTTTAATTGAGTGAAGCCTTACAAGCATGAACGATGGTTCTAGCAAGTAAGCATATAAAGTCTTTCT TGTTTTGATGTTAGTATATGCTCGCCTGGCATGTGAGAACTTGGTCAGGTCAACTCATCAATGTCTAGAACCTCCCCTTC TTCTTTGGTGCTCTGTGGCCACTTGCCATGCATGTACTCGCGAGCCCTTTGATTCGACATTTGAAAAAACCTCTTGTTGC ATTGTGGTTGTTGATTTGCCCGCGGCGATTTAGATTCTTTAAGTTATTGGTGTTGAGATCTCCTACTCCACTTACCCCAC AACTAAGAAAACGTAATCAACTACTAGTTCTTCAACCTACCTAACTCTCAAGTAGTAAATTTTTTCTCTAAAAGTCAAGA CAACTCTCTTATCGCTCGCAACTACTCTTCTTAATCTGATACCGTAAGTATTAGGGAGGAAACAAAAGATTCCCC
CDS sequence (LotjaGi5g1v0199000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACTGCTCAGTGGCCACAGGAAATTGTGATGAAGCCAATTGAAGGTATTGTGGTGACAAACACATGTCCAAAGCC TGAATCCATGCTGGAGATCAAGAAGGCAAGGCCACAGAAAGAAGAAGCTGTGAACTGTCCAAGGTGTCACTCAATCAACA CCAAGTTCTGCTACTACAACAACTATAGCCTCACTCAGCCCAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACTGAA GGCGGGTCCCTCCGAAACATCCCAGTAGGAGGTGGATCAAGGAAGAACAAGCACAGATCTAATTCTGTTATTTCTACACC TTCAACAACCAGTAATAAGAATCTTCCTGATCTGGTCACACCAACTTGCACTCCAAACCCTAAGATTTTCAATGATGGCC AAGATCTGAATTTGGGGTTCCCAAAAATCTCTGAATTGGTTCATCAAAACAACAACACTTCTTTTTGTTCAACTACTACA TCTTCAACTTCTCACCTTTCAGCATTGGGGCTTCTTACTGGGATCACTTCTTCTTCTTCAAGTTCTAGGGGTTTGCAATA TTCTTTCATGCCTGTACCAGTTTCAGCTGATCCAAACACTGTTTACACTACTTGTGGGTTTCCTATGCATGATTTTAAGC CAACCCTGAATTTCACTCTAGATGGGAATGGAAGTGATTATGCAAGTTTTCAGGGTCATGTTCAAGATACAAGTACTGGG AGGGTTTTGTTCCCGTTTGAGGATTTGAAACAGGTGTCTAGCACCACAGCAAGAATGGATCACAATAATGATAAGGAGGT GCAACAAGGAGATTCAGCTGGGTATTGGAGTGGAATGTTAGGTGGTGGTGGATCATGGTAA
Protein sequence (LotjaGi5g1v0199000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTAQWPQEIVMKPIEGIVVTNTCPKPESMLEIKKARPQKEEAVNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTE GGSLRNIPVGGGSRKNKHRSNSVISTPSTTSNKNLPDLVTPTCTPNPKIFNDGQDLNLGFPKISELVHQNNNTSFCSTTT SSTSHLSALGLLTGITSSSSSSRGLQYSFMPVPVSADPNTVYTTCGFPMHDFKPTLNFTLDGNGSDYASFQGHVQDTSTG RVLFPFEDLKQVSSTTARMDHNNDKEVQQGDSAGYWSGMLGGGGSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 286 | 280 | 9.3E-83 | – | |
| PANTHER | 7 | 286 | 280 | 9.3E-83 | – | |
| Pfam | 42 | 98 | 57 | 3.1E-33 | ||
| ProSiteProfiles | 44 | 98 | 55 | 28.435 | ||
| ProSitePatterns | 46 | 82 | 37 | - | ||
| MobiDBLite | 86 | 118 | 33 | - | – | |
| MobiDBLite | 95 | 118 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0199000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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