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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0199100 |
| Transcript ID | LotjaGi5g1v0199100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor-related family protein; TAIR: AT2G27230.1 transcription factor-like protein; Swiss-Prot: sp|Q9XIN0|LHW_ARATH Transcription factor LHW; TrEMBL-Plants: tr|A0A0B2P6Z8|A0A0B2P6Z8_GLYSO Putative basic helix-loop-helix protein; Found in the gene: LotjaGi5g1v0199100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49679041..49683994) extracted from Lotus japonicus Gifu genome v1.2.
GTAAATAAATACTAAGTGCATTTAGATTTGATTGGAAGTGAGAAGAGGCCAAAACCTTACAACATTTCTGTTCAGTCAGA ACTTGTCTTTCCTTTTTCTTCCTTAGACACCATTTGTGTTCTGTTCTGTTCTGCTTTCACACTTGACATTTCTCATAGCT TGTTTCAATTCACCAATTATTTTCTGTACTCAAGATATATTGAGTGTAGTTGAACAACACTGTTTTCTCATTGATGTATA GATAACCATTTAGTTGGTGTTAAAATGACAATGACAATGGAAGTGTCTCATAGTACTCTAAGGAATAAGCTAAAGACTCT TTGTTCTTATGAACATGGCTGGTCTTATGCAGTTTTCTGGCGTTTTCATCCGCGGAATTCTTTGTAAGCTTATGTTTTTC CTTTTCTTCTTCAATTGTATCAATCTCTTTTTAGTGCATGATTGGAAAACCTTCTACAATTGATTCTGGAGTCCGTTGTG TGAGTAACTTCTAAGTTTCATAATTGATTGCTTAAGAAGTTGATCCAAACATGCTATTATGAGAATCAAAGAATCACATT TCTGGAAAGTGGGAACCTTTTTTCTTCCCTCATTTGATCTTTCTCACCTTAGATTACATGTTTGAAATTCCCACAGGATG CTGATCATGGAAGAAGCATACTATGAAGAGGAATTGGGAGAAGATATTGCACACGTGCTTCCACAAATGCATTTGCTGGG TGAAGGGTATGCATGCTCAAACTAACTTCTTGTTGTTTTTACTAAACCTGTCAGATAAAGAGAGTTTTTAAGATTTTGCC AAATGCTTCTTTCACCCAATGGATTAATTTCAAGTGTGCAAAATTTAAATGAAAGGGAAAGGGATTAAGTGTGCATTTGA TCAGCATTGAAATAATTCCGGACAAAATTGATTATGCTAAAACTGCATATTAAACGTGAGTTAAAATGATGCGTTTTATG TTCGGATACCTTTGGAAAAAGTGGGTTTTCAGGGTAATTCTACGAAATTCAATTGTAAAATCCTAAATTCTTAGATTTCA TTATGTTTCACACAGAAATCACTATTTATTGAGGCAAGTATAATTGATTTTTGACCCTTTAGTGGTACATCCATACATCG TTTTACTAGTTAGAAATTAGAATTGATTTTAATCAAGTAGAATTGAGTATAAGACACTAATTATAATGTCCTATCTAGAA TTGTTGGTGAAGCAGCTTTTAGTGGCAAGCACAGTTGGGTGCACTCAGATAGTCAAACCCAAGAATGGAATTTTACTGGG CAGAATACTACTGAGGTATTGCTTTAACATTTAAACTGTTGAGTTGGTCCCTTAATTTCAATTTTCAACTCCTCTTGTGA AAGTCCACTTATCACTTAAGAACCATTTTTCTTTCTTTCTTTAGGATGATTCTGGATTGCATCAACAATTCTCCAATGGG ATAAAGGTACTACTATAATGGTATTTCATATTTGAGGTTCCAACATTTATTCATATGCTCTAAAATAATTATTTTGGTTA AAGTCACTGAGATCACGCGTAATAAGTGTCTATAGGACCATATAAAGTGTGTTTTTTTTTATTCTCTTTCTTCTTCAAAG CTTGAGCAATGTATATTGATGAACGGTTCTGATTTGCAGACAATTGTGGTCATACCTGTAAAAGCATGTGGGGTGGTACA GTTTGGATCCAAAAAGAAGGTTTGTATTGACAAAGAACATAATTTATGACATCATGCAAAAATAGCTTTGTGCTATTTAC ATTTTTTTAGGAGAAAAATTAGGTGCAGTTCTATATATGCAGTTTTATTGTTCTCTAATCACAATACAACACATGCGCTA AAAAAATAATGTTTGGAGAAAATCTTAGATTTCAATTATTTACATACTTAATTATATGGTAATGTGCTAAAGGATCAAAA TACTTTCATTTCTACAGATTTTTGAGACAGTGGATTTTTTGGAGCAAACACAAAGCCTGCTAATGGAGATAGATGATAAG GATGTGCCTGATGATATGTTAGGAAATGAAGTTTTATCACTGGAATTTGAAAATTTTGATCTACATGGTTTGCTTGATTC CATTTCAACTGAAAATTCACATGATTGGAATCTCCAATATCCTCATGATGAACACTTCAATGAATTGAGCAAAGTTTATT CTTCTGCAAGTTCCAATGACCCTTTCACTTCCCAATTGAAGATTGGGGAAGAAGGGATGATGACTTCATGGCAAGGAGAT TCTTCTTATCTTAGTGACCTATTGAATGATCCCATTGAAGAGATTAATGATGTGCTTTTGAACAGCTTAATTGACAAAAA CCCTTGTTTTGATTCATGGAGTGGTGAAATATCCTCTTTTGATTTGTTGGAGCAACAATTGGCACCTGAAATAGGACCAC AAGAAGTTATAGATGTGTGTTTTGCAGAAGAAAATGCATTTTCTAGTATCCAACTTCCAGTTCAAGATTCAGCATTGACC TCACTGAATAACCAACATTCTTCTAAATCTATTGTTGTGGCTGATGTTAATTTCCCATTGAGTTCTGATACCTTACATGA ATTCTCTGAGAATTTAGAGCCAGTTGATATGTCAGAAGAGTTTTTGAAGTTCAGTTCCATGGATGATCTTTTCCAGTGGT TTGCTCCTTCTGCAACCCTTTCTGAATCAATAGAATTTAACCCGTCTTCTTCTATGGTTGGAAGTAGTTCAAGTGATATT CCAGTGGCATGCCTAACTGGGAATAATTCCTTCGCCTCTACAATCAACTCGATCGGGAAAGAAACATCTGCGGTTACACA TAGTTCTGAAAATAACCTCTTGGATAACATGGAACTTGATTTGAGCTTTGATCAAGCTGATCAATGGTGGGGAAATATAA TAACACCAATGGTCAATGCTGCTCCTGATTCTAGCTTTTCTCAATGCCTATCAGAAATGAACATAGGTACAATGAGTAGC AACGGGAAGAGATTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGAGGGGTGAATCAAGTTCCAATCCTTATAACAGTTC AGATTTTGGGTATGGATTATCATCCAATAAGAGGCAGTTAGTAGAACTTTCAGCAATGAATAGAAATCCAATGAGTTTTG CAAATCTTGCTGGGAATGAGGTTAGAGCAAACTTGATGCAGCCAGTTTCTGACTTGGAAAATTCAAGCAGCAGTCTTTTA GGCAAGAAAGATACATTCCTAAAATCACAAGTAGGCATGTTGAGTGATGATAGGCATAGCATTCATATTGGGAAAGATGT TCCTGTCTCCCTCCAAAAGCCGAAGGAACACACGAAGCCCACTAGGAGAGGGGCTAGGCCAAAGGAGAGTACTCGGCCAC GACCAAAAGATCGCCAGCAGATCCAAGACTGTATCAAAGAGCTGAGAGGAATCATCCCCAGTGGTGGAAAGGTAAGAATA AAACCATTAATGTCTTTCTAGGGGAATGGTCATTATAAGCACAAACTAATATTTCCTCTATTTATGTGACATAGTTTCAT GCACAACCTTAGCTGCAAATTTGTTTGCTTAAGAGACAGTTTTGAGAATAAGACATTGAAAAATGTTTTCTTGATTTAAC AGTGCAGCATTGATTCGTTGCTAGACCGCACCATTAGATACATGGTTTTCTTAAGAAGTGTCATCAATTATGCAGACAAG CTACAAGAACCCCATGAGCCAAAGGTACCTAATCGAACTGCATGTTTGGAAACTCGTTTGAAAATCACGATAAAGTCAAC ATCACGGTGCCACGGTGGACAGAAGCAAAAGATAAAAGAAGTTGCTTCTGTCCACCATAATTTTGACTTCACAACAATTT TTGCACAATTTTTTTTCTTCAATTGAAACATTCTTAAAATCGTCATCAGTAGTCAGTACCAGAAATGATTGGACTTGTTT GGATGTTTAGCTCATTAACCAGGAAAATGAAGAGGTTCCAAATGATAGTGGTGTTACATGTGTATTTGAAGTGGCAAATC AAACTATGGTGTGCCCAATCATAGTTGAGGACATGAGCCAACCTGGGCATATGCTTATAGAGGTAAGAAACTAAGAACAT AATTAAAAAAATTGCATCTTTACACATATTGGCACTGAGAAATTCATTGAAATTGTTCTGTTGCAGATGCTTTGTGAGGA GCAGGGTTTCTTCCTTGAGATTGTTGACATAATTAAGGGATTTGGGCTCAATATCTTGAAGGGAAAGATGGAATTGAAGA AGAACAAACAATGGTCACGCTTTATTGTCGAGGTAAATCGAATATTTGACTACAATATTCATGTATAACATTTAAATGGT GCATATGAAAATGCAATTTTCTCTCTTTTCATTTTTCTACTCTTTTTCCAATAATTCTTCTGGTTATTTTGTGCAACAGG CAAACAGTCATAATGTGTCAAGGATAGATGTATTTTGGTCCCTTCTCCATCTTCTACAGCAAACAAACAGCTCTGGTGTT GATTCTGCTAATCAGCATAGTAATGTTATTGGTACAATCTTTTCTTAACCCGGTACCGGACACGGTTATGACAGAGGCTC TTGATTGATTTCAGAGATATCTTGAGCATGTAATGGATGTTCTGGAAGTGTAAAAGAAGATCACCACCCATTTCTTCAGG TTTTAGAAACAGGATCCGATTGTACATAGATGATACTAGATTAGGATACACCTAATTAGCAAAAACTATAGATGATGTTG TGTCTAAGTTACTGCCTAAGTTAGGTGCAAAATCATTATGAAATTGCTGATGATCAGTGTTGGGTGAATGCTTGTGAAAT GCAAGACATGTTAATGGAGTGAACCAGATAATTCAATTGGGCTAACTATTAATAGCTCCAATGTTCACTTTGTTTCATTT TATAATAATAATATTTCCAAATAGAAGATTGGTTTGGACATGAATGATTGAATAGAATAGTTGGACAAATACTA
CDS sequence (LotjaGi5g1v0199100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATGACAATGGAAGTGTCTCATAGTACTCTAAGGAATAAGCTAAAGACTCTTTGTTCTTATGAACATGGCTGGTC TTATGCAGTTTTCTGGCGTTTTCATCCGCGGAATTCTTTGATGCTGATCATGGAAGAAGCATACTATGAAGAGGAATTGG GAGAAGATATTGCACACGTGCTTCCACAAATGCATTTGCTGGGTGAAGGAATTGTTGGTGAAGCAGCTTTTAGTGGCAAG CACAGTTGGGTGCACTCAGATAGTCAAACCCAAGAATGGAATTTTACTGGGCAGAATACTACTGAGGATGATTCTGGATT GCATCAACAATTCTCCAATGGGATAAAGACAATTGTGGTCATACCTGTAAAAGCATGTGGGGTGGTACAGTTTGGATCCA AAAAGAAGATTTTTGAGACAGTGGATTTTTTGGAGCAAACACAAAGCCTGCTAATGGAGATAGATGATAAGGATGTGCCT GATGATATGTTAGGAAATGAAGTTTTATCACTGGAATTTGAAAATTTTGATCTACATGGTTTGCTTGATTCCATTTCAAC TGAAAATTCACATGATTGGAATCTCCAATATCCTCATGATGAACACTTCAATGAATTGAGCAAAGTTTATTCTTCTGCAA GTTCCAATGACCCTTTCACTTCCCAATTGAAGATTGGGGAAGAAGGGATGATGACTTCATGGCAAGGAGATTCTTCTTAT CTTAGTGACCTATTGAATGATCCCATTGAAGAGATTAATGATGTGCTTTTGAACAGCTTAATTGACAAAAACCCTTGTTT TGATTCATGGAGTGGTGAAATATCCTCTTTTGATTTGTTGGAGCAACAATTGGCACCTGAAATAGGACCACAAGAAGTTA TAGATGTGTGTTTTGCAGAAGAAAATGCATTTTCTAGTATCCAACTTCCAGTTCAAGATTCAGCATTGACCTCACTGAAT AACCAACATTCTTCTAAATCTATTGTTGTGGCTGATGTTAATTTCCCATTGAGTTCTGATACCTTACATGAATTCTCTGA GAATTTAGAGCCAGTTGATATGTCAGAAGAGTTTTTGAAGTTCAGTTCCATGGATGATCTTTTCCAGTGGTTTGCTCCTT CTGCAACCCTTTCTGAATCAATAGAATTTAACCCGTCTTCTTCTATGGTTGGAAGTAGTTCAAGTGATATTCCAGTGGCA TGCCTAACTGGGAATAATTCCTTCGCCTCTACAATCAACTCGATCGGGAAAGAAACATCTGCGGTTACACATAGTTCTGA AAATAACCTCTTGGATAACATGGAACTTGATTTGAGCTTTGATCAAGCTGATCAATGGTGGGGAAATATAATAACACCAA TGGTCAATGCTGCTCCTGATTCTAGCTTTTCTCAATGCCTATCAGAAATGAACATAGGTACAATGAGTAGCAACGGGAAG AGATTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGAGGGGTGAATCAAGTTCCAATCCTTATAACAGTTCAGATTTTGG GTATGGATTATCATCCAATAAGAGGCAGTTAGTAGAACTTTCAGCAATGAATAGAAATCCAATGAGTTTTGCAAATCTTG CTGGGAATGAGGTTAGAGCAAACTTGATGCAGCCAGTTTCTGACTTGGAAAATTCAAGCAGCAGTCTTTTAGGCAAGAAA GATACATTCCTAAAATCACAAGTAGGCATGTTGAGTGATGATAGGCATAGCATTCATATTGGGAAAGATGTTCCTGTCTC CCTCCAAAAGCCGAAGGAACACACGAAGCCCACTAGGAGAGGGGCTAGGCCAAAGGAGAGTACTCGGCCACGACCAAAAG ATCGCCAGCAGATCCAAGACTGTATCAAAGAGCTGAGAGGAATCATCCCCAGTGGTGGAAAGTGCAGCATTGATTCGTTG CTAGACCGCACCATTAGATACATGGTTTTCTTAAGAAGTGTCATCAATTATGCAGACAAGCTACAAGAACCCCATGAGCC AAAGCTCATTAACCAGGAAAATGAAGAGGTTCCAAATGATAGTGGTGTTACATGTGTATTTGAAGTGGCAAATCAAACTA TGGTGTGCCCAATCATAGTTGAGGACATGAGCCAACCTGGGCATATGCTTATAGAGATGCTTTGTGAGGAGCAGGGTTTC TTCCTTGAGATTGTTGACATAATTAAGGGATTTGGGCTCAATATCTTGAAGGGAAAGATGGAATTGAAGAAGAACAAACA ATGGTCACGCTTTATTGTCGAGGCAAACAGTCATAATGTGTCAAGGATAGATGTATTTTGGTCCCTTCTCCATCTTCTAC AGCAAACAAACAGCTCTGGTGTTGATTCTGCTAATCAGCATAGTAATGTTATTGGTACAATCTTTTCTTAA
Protein sequence (LotjaGi5g1v0199100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMTMEVSHSTLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMEEAYYEEELGEDIAHVLPQMHLLGEGIVGEAAFSGK HSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKACGVVQFGSKKKIFETVDFLEQTQSLLMEIDDKDVP DDMLGNEVLSLEFENFDLHGLLDSISTENSHDWNLQYPHDEHFNELSKVYSSASSNDPFTSQLKIGEEGMMTSWQGDSSY LSDLLNDPIEEINDVLLNSLIDKNPCFDSWSGEISSFDLLEQQLAPEIGPQEVIDVCFAEENAFSSIQLPVQDSALTSLN NQHSSKSIVVADVNFPLSSDTLHEFSENLEPVDMSEEFLKFSSMDDLFQWFAPSATLSESIEFNPSSSMVGSSSSDIPVA CLTGNNSFASTINSIGKETSAVTHSSENNLLDNMELDLSFDQADQWWGNIITPMVNAAPDSSFSQCLSEMNIGTMSSNGK RLFSELGIEELLRGESSSNPYNSSDFGYGLSSNKRQLVELSAMNRNPMSFANLAGNEVRANLMQPVSDLENSSSSLLGKK DTFLKSQVGMLSDDRHSIHIGKDVPVSLQKPKEHTKPTRRGARPKESTRPRPKDRQQIQDCIKELRGIIPSGGKCSIDSL LDRTIRYMVFLRSVINYADKLQEPHEPKLINQENEEVPNDSGVTCVFEVANQTMVCPIIVEDMSQPGHMLIEMLCEEQGF FLEIVDIIKGFGLNILKGKMELKKNKQWSRFIVEANSHNVSRIDVFWSLLHLLQQTNSSGVDSANQHSNVIGTIFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 792 | 783 | 1.2E-229 | – | |
| PANTHER | 10 | 792 | 783 | 1.2E-229 | – | |
| Pfam | 61 | 150 | 90 | 1.7E-15 | ||
| MobiDBLite | 581 | 617 | 37 | - | – | |
| ProSiteProfiles | 602 | 651 | 50 | 10.537 | ||
| SUPERFAMILY | 615 | 658 | 44 | 1.44E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0199100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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