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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0201500 |
| Transcript ID | LotjaGi5g1v0201500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | StAR-related lipid transfer protein; TAIR: AT1G64720.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial; TrEMBL-Plants: tr|A0A072VMT6|A0A072VMT6_MEDTR Mammalian STARD2 lipid-binding START domain protein; Found in the gene: LotjaGi5g1v0201500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50080511..50084521) extracted from Lotus japonicus Gifu genome v1.2.
GTATTATGACCGCTTATGCAGCAATCCTTATCCGTATTGCTCAGCTGTTCACAATCCCTCACTCGTCCCCACCTCTATTT ATCGCCCTTTCCCCCAATTTCCCAAACCGGAGAATTGGTTGTTCCGCTTCTTCTTCCGCCGCATCCACCACCGCAACCCA CGGCGGAGGGTTTTATTTTATCATCTCACCACCACCACCCTCCATGTCCTTATTAGGAATCTTCCAGAAACCCGCGGTTT TGAACTTCCTTGTAGACCTCGCCATGTTCATCGCTCCGCTCTGGATTGCGGTTCTCGTCGGCGTCGTGCTCGGCTGGGCT TGGAAACCTAAATGGGCCGCCGCCGTCGACAGTGAACATGCTTGGACCAATTTCTTCCACTTCCGCAGCTTCCCCTGGTT CCCCAATTCGGACCTCCACAACGGACCCGAACCCGACCCGGATTTTTCATACTCCACCAGGTTCGTTTCTTCGATTTTCC ATTTTCATTTCATTTCCGTGAAATTTGTGTCCTGAAGGTTAGCTCAAGTGGTAAAAAAGCTCAGGAGTTCGGGGTTCGAA ACCGAGGAGTATCTAATTTACTAACATTACTAACAACTAACATTTGTTCGTGCAGTTCGGGCGCGCCTTCTCTGAAAGGC GTGAGCTCGCTGGTAACTGAGCAAGATTTGCGGCAGTTATCGAAGTTAGTTGAGGAGAAAGATGGTGGACTGGCATGGAT TCAGATGATGGATCGTTCTACTCAGACCATGAGCTACCAAGCATGGCGTAGGGACCCGGAGGTATGGATTGTTCATTGTT TGTTTTGAATTTGAATTTGAATTTGGTTTGAACTGTTGAATTTGATTGTGTGATGCATGGTTGGTTTGTGAATTTTGTTT GATAGAGTGGACCGCCGCAGTATCGAAGTAGGACTGTTTTTGAGGATGCGAGTGCTGAGTTGGTGAGGGATTTCTTTTGG GATGATGAGTATAGGTTGAAGTGGGATGACATGCTTATACATGCTTCGATTATTGAAGATTGCGCTGTTACCGGAGCAAT GATGGTGCATTGGGTGCGCAAGGTTAGTGGTAGGAGGACTATAGGTGTATAGCGTGCTGTTGTGGTGTGTGAGTGTTGTG AGTTTTTTCTTGCATTCTCATATTCTCTGTGGTTTTCGCTTGCTTCAGTTTCCCTTCTTTTGCAGTGATCGAGAGTATAT CATTGGTCGTCGAATTTGGAATGCAGGAAATGCTTACTACTGTGTCACAAAGGTATGGAATTGTAAATGCATGTTCTCTC TGTATAATGTAATGGCAGTATGTGAGGGTGCTGGGGTGTAGTAGCTAATAATAGTATCTTTGGATGGAAATCGAAAAGAA GGGTAAAATTCTCATTTTAAGTAAATTATCTATTTAATATAGATCAATGTTTGACATGCGAATAGACCAGAACAAAACAT GATGTTCTGTTCTGGTCTTTTTGGTAGATGCACCACGTTTCCTTGCTTATGCCATGTTTGGTTCTGCATTTAATATGCAT TAAGTGTGTGTTCGAAGTCCCGTGTGGCAAAATTTTGCATCTCTGTCTGTGAGTTGGGATATGTGTTATCCCGTAAACGG GAAACCAAACATACACTAAATATAGAACAAAATCAAATATGTATTTTGTTCTGTAGTCTGTACTGATCTAATCTGTCTAC CCGACATTAGTGTTCTAATCCCTTGTTATAATGGAAGACTGAAATGGTACCCTAGCATGGTCGTCTAATCTTACACTTGA CTTTAGTTTTGACTTTGATAAAAATTGAACTCATTATTGGAATTTAATAAGCTATTTCCCGTTTCTTTGAATAGGGATTA CATAAGCATGATAATGTTCTCACTTCTCAATCTTTTGAGAGATATCTTTTATATGTTATGTTTCTAGATTTTTTATTTAT TTCAACTTGTGGATATTTCACTTCTGCAGGGAGTACCTTGCTCCTCTATGCCAAGGCAGAACAAACCTAAACGAGTCGAT CTATATTATTCGAGCTTTTGTATTCGTCCAGGTAATTGGTAGTTTAGGGCTTAACCCTCAAAAGTACTCTTTATTTACCA AGCATTTCACGTATTAAGAAATTATTGATAATTATCAGCTCTGAATTTTGAAAACCTTACTAGTATGTATTATGTCTCGA GCAAGGTCTTTTTAGTAGTTTTTCTTCATAATGTCTTCTTAGATCCTGCTCTGTTCCTTTTAACCATGCTTACTTCCATT AGTTACACTTTTCTCCTTGGAACCTCTTGTTGTCTTCTTTAATGACCAAAACACCTTAGGCGAGTCTTTGCCATCTCTGA ACTTTCTATTGGATAGGCAATAATCTGATCTTCTCTTGTACTTTCAATTTTTCATTCATTAATCTGAGCAATCCACCTCA GACTTTTACCTCTTCTATGTTGGTTATTTTCCTCTCTGATACTTCACCAGACAAAGTGTACCACCATACATCTTGTTGGT CGGTGTATAGTAGAGTTTTGATGGGCTGATCTTTACACTTGAACTGTGCAATTTATGTTCTGATGTGATCCCCAATTATC ATCTTTAATAATATTCCTAACTTCCATTCCATGTTCTCTGTCTTACTCCCTCTTTACTGGACTAATTTCAGAATTTATTC CTCTCAAATTATCAATGAAGACTTAGTTAATATTTCATAAAAAATGCTGTCCTATAATCGGGAACTAACAGGGACTCAAT TAAAGTGATTTTGGTTTCATATAAATGATGGACCATGAAACAATTGTTTGTTTTCCTCAAAGTCAAAGTAGGATTTCTAG AATCAAGAATCAAAGAAATCGTTAGATTCTGTTCTGTTTTTATTGATTATGATTTTATGGAAAAAAGACTTATGTGCGTC TATTGCATATGTGGATCAGTTAAATCAAGAAAAGATGGCCAGCTGACTGCATGCGAGGTGTTATTGTTTCACTATGAGGA TATGGGCATACCCTGGGAAATCGCTAAGCTTGGAGTTCGCCAGGGCATGTGGGGAGCTGTGAAGAAGTTTGATCCAGCAC TACGGATATATGAGAAAGAAAGGGCTTCTGGTGCATTATCACGCTGTGCTAACGCTGCTAAAATCAACACTAAAGTAACT CCAGACTATCTGAGATGTCTGGAAGAAACAACTGGTAACTTGTTGGAGAATGAAAATCAGGACTCTTCTGTCAAACCAAT TGGGAGGAACATACCTAAGCTTCTAGTTGTTGGTGGAGCCATCGCGCTTGCCTGCACTCTTGATCAAGGACTAGTAACTA AGGCAGTTATATTTGGAGTAGCTCGAAGGTTTGCGAAAATTGGAAGGAGGTTGTGACTTGTTGATGCATAACGTTTTCAG CATCTTTGAGAAATTGCTAGCTAAGTCTTTCTGGCAGTAGAATTGAAACTGATATGTGACTTGCTTTCAAGTCTGTTTAC AGTGGATCTAGTTGGAATGGTAGTATTCTTTCTCCATTAGTTTGGGTCACGAGCCACGACGCAGCTTTTAAGTGGAATTT ATGACAATTGTATATTTAAGTCATTGAAGATTATCTTGCTGCAGGAATAACACCAAATATTTGGTTTTTTCTTTGGTTCA GGTCTTCTTGTTAGCCCCCCGGCCCCCTCTTTCTTTCTAGTTTTTACCTTTTAGTTTTGTTTTGTATATCATCTTCATAA TTTGATTATGAAGACACATTGAACAAGATATGGTTCTCAGAATTTGATTGCACGGAAGTTTGATTATTGTCGTGTTTCTC TGTAGATAAAAGAAGTACAGTTTCTGATGAAAGAACCCAGTCCTAAGTAGTCATAGAAACATAAATACTTTAACATAAAC ATCTGCTAAAATGTTCATCGATGCAACATTTCAATCTCATCAGTAATCAAATCAGTAGAAAATTTGATCTTATACGAGAA ATCAACACATAAAACATGCTATCTATAATATCAAGAAGTTGTAGACATAAATCACATTTTGTCAATGAGACATAGGAAAG CTAATCCTCCG
CDS sequence (LotjaGi5g1v0201500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGCTTATGCAGCAATCCTTATCCGTATTGCTCAGCTGTTCACAATCCCTCACTCGTCCCCACCTCTATTTATCGC CCTTTCCCCCAATTTCCCAAACCGGAGAATTGGTTGTTCCGCTTCTTCTTCCGCCGCATCCACCACCGCAACCCACGGCG GAGGGTTTTATTTTATCATCTCACCACCACCACCCTCCATGTCCTTATTAGGAATCTTCCAGAAACCCGCGGTTTTGAAC TTCCTTGTAGACCTCGCCATGTTCATCGCTCCGCTCTGGATTGCGGTTCTCGTCGGCGTCGTGCTCGGCTGGGCTTGGAA ACCTAAATGGGCCGCCGCCGTCGACAGTGAACATGCTTGGACCAATTTCTTCCACTTCCGCAGCTTCCCCTGGTTCCCCA ATTCGGACCTCCACAACGGACCCGAACCCGACCCGGATTTTTCATACTCCACCAGTTCGGGCGCGCCTTCTCTGAAAGGC GTGAGCTCGCTGGTAACTGAGCAAGATTTGCGGCAGTTATCGAAGTTAGTTGAGGAGAAAGATGGTGGACTGGCATGGAT TCAGATGATGGATCGTTCTACTCAGACCATGAGCTACCAAGCATGGCGTAGGGACCCGGAGAGTGGACCGCCGCAGTATC GAAGTAGGACTGTTTTTGAGGATGCGAGTGCTGAGTTGGTGAGGGATTTCTTTTGGGATGATGAGTATAGGTTGAAGTGG GATGACATGCTTATACATGCTTCGATTATTGAAGATTGCGCTGTTACCGGAGCAATGATGGTGCATTGGGTGCGCAAGTT TCCCTTCTTTTGCAGTGATCGAGAGTATATCATTGGTCGTCGAATTTGGAATGCAGGAAATGCTTACTACTGTGTCACAA AGGGAGTACCTTGCTCCTCTATGCCAAGGCAGAACAAACCTAAACGAGTCGATCTATATTATTCGAGCTTTTGTATTCGT CCAGTTAAATCAAGAAAAGATGGCCAGCTGACTGCATGCGAGGTGTTATTGTTTCACTATGAGGATATGGGCATACCCTG GGAAATCGCTAAGCTTGGAGTTCGCCAGGGCATGTGGGGAGCTGTGAAGAAGTTTGATCCAGCACTACGGATATATGAGA AAGAAAGGGCTTCTGGTGCATTATCACGCTGTGCTAACGCTGCTAAAATCAACACTAAAGTAACTCCAGACTATCTGAGA TGTCTGGAAGAAACAACTGGTAACTTGTTGGAGAATGAAAATCAGGACTCTTCTGTCAAACCAATTGGGAGGAACATACC TAAGCTTCTAGTTGTTGGTGGAGCCATCGCGCTTGCCTGCACTCTTGATCAAGGACTAGTAACTAAGGCAGTTATATTTG GAGTAGCTCGAAGGTTTGCGAAAATTGGAAGGAGGTTGTGA
Protein sequence (LotjaGi5g1v0201500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAYAAILIRIAQLFTIPHSSPPLFIALSPNFPNRRIGCSASSSAASTTATHGGGFYFIISPPPPSMSLLGIFQKPAVLN FLVDLAMFIAPLWIAVLVGVVLGWAWKPKWAAAVDSEHAWTNFFHFRSFPWFPNSDLHNGPEPDPDFSYSTSSGAPSLKG VSSLVTEQDLRQLSKLVEEKDGGLAWIQMMDRSTQTMSYQAWRRDPESGPPQYRSRTVFEDASAELVRDFFWDDEYRLKW DDMLIHASIIEDCAVTGAMMVHWVRKFPFFCSDREYIIGRRIWNAGNAYYCVTKGVPCSSMPRQNKPKRVDLYYSSFCIR PVKSRKDGQLTACEVLLFHYEDMGIPWEIAKLGVRQGMWGAVKKFDPALRIYEKERASGALSRCANAAKINTKVTPDYLR CLEETTGNLLENENQDSSVKPIGRNIPKLLVVGGAIALACTLDQGLVTKAVIFGVARRFAKIGRRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 76 | 76 | - | – | |
| Phobius | 77 | 106 | 30 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| PANTHER | 84 | 113 | 30 | 5.6E-168 | – | |
| PANTHER | 84 | 113 | 30 | 5.6E-168 | – | |
| Phobius | 107 | 466 | 360 | - | – | |
| PANTHER | 149 | 462 | 314 | 5.6E-168 | – | |
| PANTHER | 149 | 462 | 314 | 5.6E-168 | – | |
| Gene3D | 159 | 376 | 218 | 8.9E-48 | ||
| CDD | 164 | 372 | 209 | 3.35732E-98 | – | |
| SUPERFAMILY | 167 | 366 | 200 | 5.16E-35 | – | |
| Pfam | 172 | 367 | 196 | 4.4E-10 | ||
| ProSiteProfiles | 186 | 374 | 189 | 21.001 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0201500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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