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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0206000 |
| Transcript ID | LotjaGi5g1v0206000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RmlC-like cupins superfamily protein; TAIR: AT3G04300.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P26496|PHAC2_PSEOL Poly(3-hydroxyalkanoate) polymerase 2; TrEMBL-Plants: tr|A0A1J7FS28|A0A1J7FS28_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0206000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50828831..50829363) extracted from Lotus japonicus Gifu genome v1.2.
ATATTCATGGCATCAACATCAACACCACCAGGGTCATCTTCAGAGCTAAGTATCACAGTTGAAAGCAATCCTTCAAAATC AAGATTATCAGAGCTGGGTATAAATTCGTGGCCCAAGTAAGTAGTGAACAAGATATAGCAATTCATATATGCTTGTCAAT AGAGTTTTCTTTTTTCTTTCTTTCTGTTTTCCTCTTCTAGGTAAGCTTTTCTTCCATTATCCATTTCTTCTTAACTATGC ACGATTAATGGATGGATCCAATGAAATTTGTGTTGTTTTTTTTTTTCAGATGGGGCTGTCCACCTGGGAAGTACATGCTG AAGTTCGACGCAGAAGAAACGTGCTACTTGGTAAGAGGAAGAGTGAAGGTGTACCCAAAAGGCTCATCAACTGAGTGTTT TCAGTTTGGTGCTGGCGACCTTGTTACCATACCCAAGGGACTTAGCTGCACATGGGACGTATCTGTTGCAGTGGACAAGC ATTACAAGTTTGAGTCTTCTTAAGCTTCCACTCCTTCACCCTCTTCCCACTAG
CDS sequence (LotjaGi5g1v0206000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAACATCAACACCACCAGGGTCATCTTCAGAGCTAAGTATCACAGTTGAAAGCAATCCTTCAAAATCAAGATT ATCAGAGCTGGGTATAAATTCGTGGCCCAAATGGGGCTGTCCACCTGGGAAGTACATGCTGAAGTTCGACGCAGAAGAAA CGTGCTACTTGGTAAGAGGAAGAGTGAAGGTGTACCCAAAAGGCTCATCAACTGAGTGTTTTCAGTTTGGTGCTGGCGAC CTTGTTACCATACCCAAGGGACTTAGCTGCACATGGGACGTATCTGTTGCAGTGGACAAGCATTACAAGTTTGAGTCTTC TTAA
Protein sequence (LotjaGi5g1v0206000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTSTPPGSSSELSITVESNPSKSRLSELGINSWPKWGCPPGKYMLKFDAEETCYLVRGRVKVYPKGSSTECFQFGAGD LVTIPKGLSCTWDVSVAVDKHYKFESS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 107 | 107 | 2.6E-60 | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 107 | 107 | 2.6E-60 | – | |
| Gene3D | 8 | 104 | 97 | 7.4E-34 | ||
| SUPERFAMILY | 27 | 102 | 76 | 3.62E-12 | ||
| Pfam | 28 | 102 | 75 | 2.8E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0206000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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