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LotjaGi5g1v0208000.2

Overview

Field Value
Gene ID LotjaGi5g1v0208000
Transcript ID LotjaGi5g1v0208000.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Dihydroorotase; TAIR: AT4G22930.1 pyrimidin 4; Swiss-Prot: sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial; TrEMBL-Plants: tr|A0A1J7HZ13|A0A1J7HZ13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0208000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:50984640..50989197) extracted from Lotus japonicus Gifu genome v1.2.

TTTTCAGAGTTTTCACTTGGTTGCTTCCATTACCTGCTCAGATTTGTTCGACCACACGCGAAGTTCCACGAACGAAGCTC ACCCTTCTCCGCCGCCGTGCGCTTCTCCGGCGATCAGGTCCGAAGCCACTGATTCTCCTCCAACATCGTTGAAGGCATTA ACCACCTATTCTACGCCACCGTCACCTCCGATTTATGGATGCTTTGCTATAATGTCGCTGATTTTCTTCTCTTTCGACAC GATTCGGTTTCTACCATTAAGGTAATGCTTAGATCTGAGGTTAGGCTTTTAGATCCATTCGTTGTTCGATTTAATCGTTC AATTTTGGCTTTCGTATTGTGTGAGTATCACGGAATGGTTCAGTTGCAGTGAAAGGGAGTATCATAGAGGGGACAAGATT GCTTTGTCGTGGACGGTGATAAAATTGCTCAAAATGAGTACAATCTAGCTACTGCTTATGCATTTGGTATTGTATTGTGG TTCTTTTGTTATTAGTTTTTATTGATTTTCTTGGAACTGGTTTTCTGATCAGTCAATGAGTCTTGGACTGGGAAATTGGC ATGACTTTGGTTTTGCATTTATGTAGAAACTAGAACTTCTGGATGTTAATCTTAGAATTATGACTTTATCCATTGCAGAT AGAGTTTTTGGACTACATTCCAATTTAGAAGTGGTGTATCAAGTTGCAGCCATACCTGTGGTGGAGGCTGCCCATAGAGG GCATCAATGGTATGAAGTCTTGTTGATCCTTGGATTCTATTAAATGTCCTTATGTTTCTCCTATCCTCCTTTTTGAAGTA CAGAGAAACCTTGTTATCTTAGTTTAAATTGAAGAAACAAAATTCTTAAACAAGTTAATTCTTTATTAAATTCTGAATTA ATTATTTAAACAAAACCTTATAAATGAAGGGACTTAAATTTTCAAATACATAATCCAAACACAGGATAAAGGTTTTCCCT CGCAGAGTTAGTTTCCAATTCTTCATTTCAGTTCCTTTTCCTTTATTGCGCCTTATATTTTGTTCTTCTTTAAATCTTAG TTGTCCTACCATGTACCGACTATATCTACTTTAGTTCTTCTAATCAAGTTTTCCTCAATCAAAATGACTACCCCCTCACT GTTCTTGCCTTTCACCAAGTTTGACATTTTCTTCATCCTTTGTTTTAAGAAAAAGATAGTATCAGTAATTTTTTGCTATT GTATTTTATTTGACAATAACTGTAGACAAGGAAAGACATTGATTTGAAAGGAGTTAATCAGACTGGAGAAAGGTTGGATA GAATAGGCACAACACTTTCCTCGCCTGATAATTCTGCTAGGGCTTATTTGGTTGTTACCCTTCTGTTATAGGTATTAAGG TTCTAATATAGAAGATTGATAAGGACAACGATGGAGCTCACTATTGTTCAACCTGATGATTGGCATCTTCACCTTCGTGA TAGTGCCCTCCTTGAAGCTGTCATCCCTCACAGGTCATTTCGCTTGTTATAGGAAAAATACTCCATGATATTCTGTTATT TCCTAATTTTTTGTGGGGTCAATGTAAGGAATACTTGCACACATCACATTTTTATAGTTTGGTGTTCATTTTTTTACTGC ATTCTAAATGATATTTACAAGTATTCTGATTCATAACTATCACTCCCACAGTGCAAAGCATTTTGGAAGGGCTATAGTAA TGCCGAATTTGAAACCACCCATCACCACCACAGCTGCTGCTATTGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAA AATAGCAACTTCACTCCTCTGATGACACTTTACCTAACAGATATGACAACTCCTGATGAGATTAAACTTGCAAGTGAGTC TAATAAGTGGGTTAGGCAAATTTAAGAAATATTACCAATGAAATATGAAAAGGAGAAAACTTTAGCTGTGTCAGTAAATT TAATTTGTCTAATATACTTTTATATTTGTAAGTTTTGCTCTGAATCCAGTTAAATGAAAATTCTGTTATCTTCTTTTACC TTGTAGGCTGTAGCTTTTACTTCTTATTGACCAGTCTGTATTTATTGTGTATGATGATGTCCGTTCAATCCACTGACAAA TTTCTTTCCTGTTGGCAATGACAATCAATAATCATTTATCATTTTATTAGATCACACTCTCTTTGTCAATCCACCTTTGA CCATTTTTATTGTGTAGTAATATAGTGCACTACTTAACGATGGTGCTTGCATTTACAGAAAAAAGTGGAGTTGTTTATGG TGTGAAGTTGTATCCTGCTGGTGCAACAACAAACTCCCAAGATGGTGTTACAGATATTTTTGGAAAATGTTACTCTGTTC TTCATGAAATGGTTGAGCAAGATTTACCATTATTGGTAATTTATTTATTTTTAATTGTAGCTCTGTTATGTTTCTTTCTT TATATTGTCTCTCCTTTCCCCAATTTTTCATTTGTTAGTGTGTGTGAGAGATTATATTTGTAGTTGAACGTATTATTTTG GACACAGATTTTAGAGCTGGTACAAATGAAAATATATACAACTCTTCAATACTTAACTATGAGCTGGGTGGTGCTTATGG CAAGCCAACCATGGCCCAGTGACATGTTTCCTTCTTTATGTATGTTCTTATTTATATATATCTACTCAAAACTTGTATTG TGCATTTTTATATGTGAATCAATATCCATGACAGGTTCATGGAGAGGTTACAAATCCAGAAGTTGATGTTTTTGACCGGG AAAAGGTCTTCATTGAAACTATCTTAGAGCCTTTAGTTCAAAGGCTTCCACAGCTGAAGGTTGTGATGGAGCATATTACC ACCATGGATGCTGTTAAATTTGTAGAATCTTGCAAAGAAGGTATTGTAATAAAATACATGTGAGAGCCTGTGTCATAGTA TTCTACTGGCCAGATGTAAAATCCTCATGATTTGCTATTTTTTTAGGCAATGTTGCAGCAACTGTTACACCACAGCATCT TTTTCTCAATCGTAATGCTTTGTTCCAAGGTGGCTTACAACCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCC ATAGTATGTAATTTTGATTTATGATTTCTTTCCCATACTGCCTAGAAAGTTTCAAGTTTCAACATATTGTAGGTTTTCTA GTGAACTTTTTGGTTGAGATTTTGAAATAATGATTCAGTGACAAATTTTAAGAACTTGAAGTAATGATTTAAAAGTTATG AATTAGATTTCTCTTCTGGTGTTATGTTGTCTTAAGTAAATTAATCAGATTCCTGATTTATCTGACTTGTATGGGAAAAG AGAAATATGTTCGTAGCACATTGAATGGTCTTTGAAGTTTGAGCATCATTATTCTTCTGTAAATTTTAACTTGGCTGCAG AGAATACACAATCTGATTGAATAGTTTTAGACTTGATTGACTAATTCTAAGTTAGTTTAAATAAATGTCACTGAGGAATG AGGACAAGGATCATCTTTTAGACAAGTCTGTTACCGAACTGTACATGTCTTGTCATCTTATCTTGAAGCTCACTTTCTTT AGTCCTTTTTTAGGACAGGCCATTGTTTCAGCTGTCACTGGTGGAAGTACACGGTTTTTCCTTGGAACTGATAGTGCTCC ACATGATAGGCGTAACAAGGAATGTTCGTGTGGATGTGCTGGCATATACAACTCCCTGGTTGCTCTATCCATATATGCGA AGGTTTTTGAAGAGGTAACACTTATTGTAATGCTTGTAATATAATATGCCAAAGTTGGTATTAGTGTATTCTTTTCACAA AAGCGCATTTGGGGGGTTGAACTGGGATATATGCTTGAGTTTTCAAGATTAATCAGCATTTAGAATCTTGTTCTGCATGC TTCCTACTGAAAGTGTGAGGAGTTTAATCTTTATGTCTTATGAAATTGTTGTTTTATAGGCCGGTGCACTTGACAAGCTG GAGGCTTTTACAAGTTTTAACGGACCTGACTTCTACGGCCTCCCCAGGAACAAGCTAAAGATTAAACTGAGGAAAGCTCC ATGGAGAGTTCCTGAGTATTTGTCATTTCCATTCGGAGATATTGTTCCCATGTGTGCTGGTCAAACACTTGAATGGGAGG CGTTGCTTAATTAAGTGGTGTGTCTATTTGAAAGTTTGGTATCTTCAAGCTTAAATTAGTGGTTCTTGAGATGAGAATTT ATGTAGAGTTCTGAACTTTGATCAGTTAATTCTGTTTTGAACTCTACAGATTTCTTGCAGATAAATGTTGTTTGTAGACT TATATTTTTTTTTGGATAGGCTATTGTACACTTATATTTATCTGCTTTCTGTTCAACTTTTACATGGAAATTATTGATGC TATCCAGACATAAATTTGAAATTCCAGGTCCATTGTCGTTGACATAATGCTAGCTAACAGGGAATATGTGAGGAATAAGT GGAAAAGAGAATGCTACTTGGATCGCTATAGTTGCATAACGTAATTTCTCCTGTTTCTTGGCATTACTGTTTTGCTGAAA ATTACAATTGGTAAGTTGTTTGAGATTTTCGAAAATCAAGAATGAAACTCCAATACTTTGATTTTTTTTTAGAATGGT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0208000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTGGCATCTTCACCTTCGTGATAGTGCCCTCCTTGAAGCTGTCATCCCTCACAGAAAAAAGTGGAGTTGTTTATGG TGTGAAGTTGTATCCTGCTGGTGCAACAACAAACTCCCAAGATGGTGTTACAGATATTTTTGGAAAATGTTACTCTGTTC TTCATGAAATGGTTGAGCAAGATTTACCATTATTGGTTCATGGAGAGGTTACAAATCCAGAAGTTGATGTTTTTGACCGG GAAAAGGTCTTCATTGAAACTATCTTAGAGCCTTTAGTTCAAAGGCTTCCACAGCTGAAGGTTGTGATGGAGCATATTAC CACCATGGATGCTGTTAAATTTGTAGAATCTTGCAAAGAAGGCAATGTTGCAGCAACTGTTACACCACAGCATCTTTTTC TCAATCGTAATGCTTTGTTCCAAGGTGGCTTACAACCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGA CAGGCCATTGTTTCAGCTGTCACTGGTGGAAGTACACGGTTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAA CAAGGAATGTTCGTGTGGATGTGCTGGCATATACAACTCCCTGGTTGCTCTATCCATATATGCGAAGGTTTTTGAAGAGG CCGGTGCACTTGACAAGCTGGAGGCTTTTACAAGTTTTAACGGACCTGACTTCTACGGCCTCCCCAGGAACAAGCTAAAG ATTAAACTGAGGAAAGCTCCATGGAGAGTTCCTGAGTATTTGTCATTTCCATTCGGAGATATTGTTCCCATGTGTGCTGG TCAAACACTTGAATGGGAGGCGTTGCTTAATTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0208000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIGIFTFVIVPSLKLSSLTEKSGVVYGVKLYPAGATTNSQDGVTDIFGKCYSVLHEMVEQDLPLLVHGEVTNPEVDVFDR EKVFIETILEPLVQRLPQLKVVMEHITTMDAVKFVESCKEGNVAATVTPQHLFLNRNALFQGGLQPHNYCLPVLKREIHR QAIVSAVTGGSTRFFLGTDSAPHDRRNKECSCGCAGIYNSLVALSIYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKLK IKLRKAPWRVPEYLSFPFGDIVPMCAGQTLEWEALLN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK
SignalP-noTM
1 16 16 - –
Gene3D
G3DSA:3.20.20.140
3 275 273 1.0E-80 –
PANTHER
PTHR43137:SF2
18 274 257 2.4E-161 –
PANTHER
PTHR43137
18 274 257 2.4E-161
IPR004721
TIGRFAM
TIGR00856
20 273 254 4.4E-101
IPR004721
Pfam
PF01979
20 238 219 4.7E-15
IPR006680
SUPERFAMILY
SSF51556
21 273 253 9.24E-102
IPR032466
ProSitePatterns
PS00483
177 188 12 -
IPR002195

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004151
Molecular function Dihydroorotase activity Catalysis of the reaction: (S)-dihydroorotate + H(2)O = N-carbamoyl-L-aspartate + H(+).
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0016812
Molecular function Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide.
Subterm of
GO:0019856
Biological process Pyrimidine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0208000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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