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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0208700 |
| Transcript ID | LotjaGi5g1v0208700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle 5-like protein; TAIR: AT1G09770.1 cell division cycle 5; Swiss-Prot: sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein; TrEMBL-Plants: tr|A0A0L9VKK7|A0A0L9VKK7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0208700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51072477..51074410) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGATTATGATCAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTCAAAGCTGCTGTGTATCTGTGATGAAA TATGGCAAGAATCAGTGGGCTCGTATCTCTTCCCTCCTCGTTCGCAAATCTGCTAAGCAATGCAAGGCTCGTTGGTATGA GTGGCTTGATCCTTCCATCAAAAAGGTCTCCATTCATTCTATGATTGCTTCTTTGTTGTCTGTTGTTATGTTTTAGCCTC ACTCTTTAATAACAATGGTAGTAGCACTAGTGATTCTTTAATTTATCCATTTTGTTAGTTGTTGGTGCATGTTTGGAAAT CTTTTAGAATTGATTCTAAAGCCAAAACCTTTAGCTTCTGGGTGTCAGAATTGATTTTGAGAAAAGAGAAATCGATCTAA ACATGCTACAAATACCCTTATTGAAGCTGTTGTTTCTTTAATCATGAATTCTTTTTTAAGGCATTTTTCCAAGGTTTTAA ATTGAGGTAATGGTCGCTGTCGTGTCACGATTGCGTTGCGGGAAAAATTGTGAACCAATGTGGCTTTCGCCTCCAAAATG TTGACGTCACAACCGAAATCACGGTTGCGGGCCTTGATTTAAAACCTTGCATTTTTCCTTCACGAGCATTTATGTTCCTT ACTTTTCTTTCTTTATTACTCAATGATTCTGTATCTTGCCATTCCTCATAAGGAGTGATGATGTTTCTTGTATGCTGACT GAGTGGACTAGAGAAGAGGATGAGAAGCTTCTTCATCTTGCTAAGCTTATGCCCACCCAATGGAGAACAATAGCGCCAAT TGTAGGCCGCACCCCTTCCCAATGCCTTGAGCGATACGAGAAGCTTCTTGATGCAGCCTGTGTGAAGGATGACAATTATG AACCCGGTGATGATCCTCGGAAATTGTGTCCTGGAGAGATTGATCCGAATCCGGAGTCAAAACCTGCACGCCCGGATCCT GTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCGCGAGCCCGATTAGCCAACACAAAGGGAAAGAAGGCAAA AAGGAAGGTTAGGGAAAAACAACTTGAGGAAGCCCGGAGGCTCGCATCTTTACAAAAGAAGAGAGAGCTGAAAGCGGTTG GAATTGATATCAGGCGCCGGAATAGAAAAAGGAGAGGGATAGACTACAATGCAGAAATTCCATTTGAGAAGAGGCCTCCT CCGGGGTTTTTTGATTTTACAGATGAAGATAGACCGGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGG AAAAAGGAGGGTTGACGTCGAGGCACAGTTGAGAAAGCAGGACATTGCAAAAAATAAAATTGCTGAGGGGCAAGATGCGT CGTCTGCTATACTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAACTGATGCTTCCGCCACCC CAGATCTCTGATCAGAAATTGGATGAAATTGCAAAGCTGGGTTACGCCGGTGATCTTGCAGGGAATGAGGAACTTGCAGA AGGTAGTGGTGCAACACATGCTCTTCTGGCTAATTATGCACAAACACCTGGCCGAGGAATGACTCCTTTACGAACCCCTC AGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGATTAAGGGAGTCTCAGACACCA TTGTTAGGAGGAGAGAACCCAGAGTTGCACCCTTCAGATTTTTCCGGGGTTACTCCTAAGAAAAATGAGATTCAGACTCC AAATCCGATGCTGACTCCCTCTTGAACTTCTGGAGGTGCCGGTCTCACTCCCAGAATTGGCATGACGCCGACAAGAAGTG AATTTTCTTTAGGCATGGCACCAAAGGGAACTCCTCTTAGAGATGAGCTCCGTATTAATGATGACATGAATACACCTAAC AGTGCTAAACTTGA
CDS sequence (LotjaGi5g1v0208700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATATGGCAAGAATCAGTGGGCTCGTATCTCTTCCCTCCTCGTTCGCAAATCTGCTAAGCAATGCAAGGCTCGTTG GTATGAGTGGCTTGATCCTTCCATCAAAAAGTGGAGAACAATAGCGCCAATTGTAGGCCGCACCCCTTCCCAATGCCTTG AGCGATACGAGAAGCTTCTTGATGCAGCCTGTGTGAAGGATGACAATTATGAACCCGGTGATGATCCTCGGAAATTGTGT CCTGGAGAGATTGATCCGAATCCGGAGTCAAAACCTGCACGCCCGGATCCTGTTGATATGGATGAGGATGAGAAGGAGAT GCTTTCTGAAGCGCGAGCCCGATTAGCCAACACAAAGGGAAAGAAGGCAAAAAGGAAGGTTAGGGAAAAACAACTTGAGG AAGCCCGGAGGCTCGCATCTTTACAAAAGAAGAGAGAGCTGAAAGCGGTTGGAATTGATATCAGGCGCCGGAATAGAAAA AGGAGAGGGATAGACTACAATGCAGAAATTCCATTTGAGAAGAGGCCTCCTCCGGGGTTTTTTGATTTTACAGATGAAGA TAGACCGGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGGAAAAAGGAGGGTTGACGTCGAGGCACAGT TGAGAAAGCAGGACATTGCAAAAAATAAAATTGCTGAGGGGCAAGATGCGTCGTCTGCTATACTGCATGCCAACAAGCTG AATGACCCAGAAACAGTAAGAAAGAGGTCAAAACTGATGCTTCCGCCACCCCAGATCTCTGATCAGAAATTGGATGAAAT TGCAAAGCTGGGTTACGCCGGTGATCTTGCAGGGAATGAGGAACTTGCAGAAGGTAGTGGTGCAACACATGCTCTTCTGG CTAATTATGCACAAACACCTGGCCGAGGAATGACTCCTTTACGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCT ATCATGATGGAAGCTGAAAATCTGGCCAGATTAAGGGAGTCTCAGACACCATTGTTAGGAGGAGAGAACCCAGAGTTGCA CCCTTCAGATTTTTCCGGGGTTACTCCTAAGAAAAATGAGATTCAGACTCCAAATCCGATGCTGACTCCCTCTTGA
Protein sequence (LotjaGi5g1v0208700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLC PGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKVREKQLEEARRLASLQKKRELKAVGIDIRRRNRK RRGIDYNAEIPFEKRPPPGFFDFTDEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAEGQDASSAILHANKL NDPETVRKRSKLMLPPPQISDQKLDEIAKLGYAGDLAGNEELAEGSGATHALLANYAQTPGRGMTPLRTPQRTPAGKGDA IMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKNEIQTPNPMLTPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 35 | 35 | 16.518 | ||
| Gene3D | 1 | 37 | 37 | 1.1E-8 | – | |
| PANTHER | 1 | 371 | 371 | 9.2E-205 | – | |
| Pfam | 2 | 31 | 30 | 8.1E-6 | ||
| CDD | 2 | 31 | 30 | 7.7211E-8 | ||
| SUPERFAMILY | 2 | 36 | 35 | 1.27E-6 | ||
| ProSiteProfiles | 37 | 60 | 24 | 5.25 | ||
| MobiDBLite | 71 | 103 | 33 | - | – | |
| MobiDBLite | 170 | 192 | 23 | - | – | |
| MobiDBLite | 227 | 250 | 24 | - | – | |
| MobiDBLite | 333 | 371 | 39 | - | – | |
| MobiDBLite | 355 | 371 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0208700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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