Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0210400 |
| Transcript ID | LotjaGi5g1v0210400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thymidylate kinase; TAIR: AT5G59440.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q0WW55|ZEUS1_ARATH Thymidylate kinase; TrEMBL-Plants: tr|A0A072TF88|A0A072TF88_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi5g1v0210400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51448309..51450674) extracted from Lotus japonicus Gifu genome v1.2.
TTGGAAAATGAAAATTGTATTTTTATTAACTAAATTGCAGGTAATGAGTACGGATACGAGCATATAAGTACCCAAAGGGT ACGAGAATGAGCATTCAAATTGCTACTCACGTTGGTAGTACCTTACCCATTGCCATCCCTAAGCTTGAGGCTGGTTTCAC ATAGCCACGAACACTTCTAGCTCCTGACAGTGGAGGAATAACAAGCTATTGCACCTTCAGCCCACAATTCCTAGTGAGCC CAGCTACCTGAGCCATCATTTTATTGACAAAAAAAAGAACCATCATTTTTAAAAGAAAATTGACAAAAAGAAAAAAAACA GTTTCAACCAGCAACCAGATCCCACACCAAACCCTAGTCTTCCAACCTCTTCACCTTCGATCTGCAGTCCAGCCACCTTC ACCGCGCCGCACGTCGCCGTCGGAGTACGCCGCTGCAAGTTGATGCCACTCTCTTCGCAAAAACCCTACCAGGAACATCA AGATCGCGAAATTGCTGGCTGTTTTGAGTGGGAATCCACCCCCTTCCATCAATCCACATCAAATTGAAGCAAAGGAGGTA GGTAGGTGTTACAGCTAGTGTGCGCAACACTTGTACATTTACAGTTTTTGTTGATATGATCTATGGCACATTCAGGAGTT TCACACCACTAGTACTGTTGCAGAATTCATTGAATTCTCGAGTGAAATTCTCCTCTAAGTGTTCTCCTAGGAAGATAACA ATGGAAGGAAGAAAGCTTAATTGTAGCATGGAGGGAAACATAAACGAGTCTAGAGGTGCCTTAGTTGTTCTAGAAGGCTT GGATCGTTCTGGGAAGTCTTCTCAGTGTACCAGACTAGTGTCCTACTTAGAGGGGCAAGGAATCAATGCTGAACTATTGA GATTTCCCGACCGAACCACGAGTGTCGGTCAAATGATATCTGCCTATCTTACTAACACATCACAATTGGATGATCATACC ATTCATCTCCTCTTCAGTGCTAACCGTTGGGAGAAGCGATCGTTGATGGAAACAAAGCTGAAAAGTGGAACAACTCTCAT TGTTGATCGTTATTCTTATTCCGGGGTGGCTTTCTCTTCTGCCAAAGGGCTTAATTTTGAATGGTGTAAGGCCCCGGAGA TTGGGTTGTTGGCTCCTGATCTGGTTGCATACCTTGACATATCACCGGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGAT GAGAGATATGAAAAGCTCGAGTTTCAGAAAAAAGTTGCTCAGAGTTACAAAGTTCTTCATGATCACTCCTGGAAGGTAAA TGACCTTGTTTGGTTTTCAGTTAGGAAGTCCGTTTGAAGCATTGTAATTCAATATCATGATTTCCAATGCACATTCAACC AACAAAATGCACTTGTTGGGTTGAGTGAATGTGCTTTCACATTCACCCAACTGAAAACCAAATAGGCTCTTATATGGCCC CTCTGAAATTATAGGTTTCATACCAATGCTCTTATATGGCCCTTCTGAAATTATAGGTTTCATACCAAGGTGGCAGCACT TTTTATGCTTCAATTAGTCCCATATATCTTGCTTGTAACCATTGTAGTATTTTATTGCATTTAGATCTTCATGCAAGTTT TAACAGCATGCTAAAACTAAACCTTTTCTTCCTCCATTACCGTTTTTCTTTTGTTCTTCATATCTCTGTCCTCTGGCTTG AAGCAGGTTGTAGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGCTACAAGAGATGGTACTTGATTGTGTCACAGA ATGCAGGAAGGGTAGGCCACTTTCCCCCTTGTGGTCGATATGAACAAGTATGCCATATAAGTTCTGGTCACCCAAGTTTA TCAATGCTTAATTCTGGTTCTTTCATTCCTATTTATCAGAATTACAAATTTGTTTGTTGAGTAATTCTGGAGAACGTATA ATATGCTATAGTGTGGAAGTGATGAAGAATTCTTGAGTCAACAATTGTTATGCAGCAGCTTTCCATAACCATGATTAGTG ACATTTTTATCTTGACAGTCTACAAAAAGCCTTGCAGACTCGGACAATTTTTTTGAAACTAGACCAACAATTTGAAGAGA TGTGAAATGAATTGTTTCTTACCCGTGAGTCTTGATTTTCACTTATAAATTTCATCTCAAACGAATTAAATTTGAATGAA TTGCACAAATTTATCTAAAAAGAGGAATATGTGTACGACTCTTAAGAACATTTTAAGTGTATCTTACACCATAGAAATAA TTGTGAGGCGGTTGTTATCTTATGGAAAGCTAGAGCAAATGTGTACGACTCTTAAGAACATTCCAAGAGCTAAATTATAT GTCTACTTAGTCATTTTTTACTTATAAAACAATTCAAAGGTGTTGT
CDS sequence (LotjaGi5g1v0210400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTATGGCACATTCAGGAGTTTCACACCACTAGTACTGTTGCAGAATTCATTGAATTCTCGAGTGAAATTCTCCTC TAAGTGTTCTCCTAGGAAGATAACAATGGAAGGAAGAAAGCTTAATTGTAGCATGGAGGGAAACATAAACGAGTCTAGAG GTGCCTTAGTTGTTCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTACCAGACTAGTGTCCTACTTAGAGGGG CAAGGAATCAATGCTGAACTATTGAGATTTCCCGACCGAACCACGAGTGTCGGTCAAATGATATCTGCCTATCTTACTAA CACATCACAATTGGATGATCATACCATTCATCTCCTCTTCAGTGCTAACCGTTGGGAGAAGCGATCGTTGATGGAAACAA AGCTGAAAAGTGGAACAACTCTCATTGTTGATCGTTATTCTTATTCCGGGGTGGCTTTCTCTTCTGCCAAAGGGCTTAAT TTTGAATGGTGTAAGGCCCCGGAGATTGGGTTGTTGGCTCCTGATCTGGTTGCATACCTTGACATATCACCGGAGAAAGC TGCAGAAAGAGGAGGGTATGGAGATGAGAGATATGAAAAGCTCGAGTTTCAGAAAAAAGTTGCTCAGAGTTACAAAGTTC TTCATGATCACTCCTGGAAGGTTGTAGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGCTACAAGAGATGGTACTT GATTGTGTCACAGAATGCAGGAAGGGTAGGCCACTTTCCCCCTTGTGGTCGATATGA
Protein sequence (LotjaGi5g1v0210400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYGTFRSFTPLVLLQNSLNSRVKFSSKCSPRKITMEGRKLNCSMEGNINESRGALVVLEGLDRSGKSSQCTRLVSYLEG QGINAELLRFPDRTTSVGQMISAYLTNTSQLDDHTIHLLFSANRWEKRSLMETKLKSGTTLIVDRYSYSGVAFSSAKGLN FEWCKAPEIGLLAPDLVAYLDISPEKAAERGGYGDERYEKLEFQKKVAQSYKVLHDHSWKVVDACQPIEDVEKQLQEMVL DCVTECRKGRPLSPLWSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 47 | 257 | 211 | 1.6E-68 | – | |
| PANTHER | 48 | 257 | 210 | 7.5E-100 | – | |
| PANTHER | 48 | 257 | 210 | 7.5E-100 | – | |
| TIGRFAM | 53 | 234 | 182 | 6.6E-38 | ||
| SUPERFAMILY | 53 | 243 | 191 | 2.67E-41 | ||
| Hamap | 55 | 243 | 189 | 15.994 | ||
| CDD | 56 | 241 | 186 | 4.76581E-31 | – | |
| Pfam | 59 | 234 | 176 | 1.3E-47 | ||
| ProSitePatterns | 142 | 154 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Thymidylate kinase activity | Catalysis of the reaction: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DTDP biosynthetic process | The chemical reactions and pathways resulting in the formation of dTDP, deoxyribosylthymine diphosphate (2'-deoxyribosylthymine5'-diphosphate). |
Expression pattern of LotjaGi5g1v0210400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…