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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0210400 |
| Transcript ID | LotjaGi5g1v0210400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thymidylate kinase; TAIR: AT5G59440.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q0WW55|ZEUS1_ARATH Thymidylate kinase; TrEMBL-Plants: tr|A0A072TF88|A0A072TF88_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi5g1v0210400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51448902..51450111) extracted from Lotus japonicus Gifu genome v1.2.
TACATTTACAGTTTTTGTTGATATGATCTATGGCACATTCAGGAGTTTCACACCACTAGTACTGTTGCAGAATTCATTGA ATTCTCGAGTGAAATTCTCCTCTAAGTGTTCTCCTAGGAAGATAACAATGGAAGGAAGAAAGCTTAATTGTAGCATGGAG GGAAACATAAACGAGTCTAGAGGTGCCTTAGTTGTTCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTACCAG ACTAGTGTCCTACTTAGAGGGGCAAGGAATCAATGCTGAACTATTGAGATTTCCCGACCGAACCACGAGTGTCGGTCAAA TGATATCTGCCTATCTTACTAACACATCACAATTGGATGATCATACCATTCATCTCCTCTTCAGTGCTAACCGTTGGGAG AAGCGATCGTTGATGGAAACAAAGCTGAAAAGTGGAACAACTCTCATTGTTGATCGTTATTCTTATTCCGGGGTGGCTTT CTCTTCTGCCAAAGGGCTTAATTTTGAATGGTGTAAGGCCCCGGAGATTGGGTTGTTGGCTCCTGATCTGGTTGCATACC TTGACATATCACCGGAGAAAGCTGCAGAAAGAGGAGGGTATGGAGATGAGAGATATGAAAAGCTCGAGTTTCAGAAAAAA GTTGCTCAGAGTTACAAAGTTCTTCATGATCACTCCTGGAAGGTAAATGACCTTGTTTGGTTTTCAGTTAGGAAGTCCGT TTGAAGCATTGTAATTCAATATCATGATTTCCAATGCACATTCAACCAACAAAATGCACTTGTTGGGTTGAGTGAATGTG CTTTCACATTCACCCAACTGAAAACCAAATAGGCTCTTATATGGCCCCTCTGAAATTATAGGTTTCATACCAATGCTCTT ATATGGCCCTTCTGAAATTATAGGTTTCATACCAAGGTGGCAGCACTTTTTATGCTTCAATTAGTCCCATATATCTTGCT TGTAACCATTGTAGTATTTTATTGCATTTAGATCTTCATGCAAGTTTTAACAGCATGCTAAAACTAAACCTTTTCTTCCT CCATTACCGTTTTTCTTTTGTTCTTCATATCTCTGTCCTCTGGCTTGAAGCAGGTTGTAGATGCTTGCCAACCCATAGAA GATGTGGAGAAACAGCTACAAGAGATGGTACTTGATTGTGTCACAGAATGCAGGAAGGGTAGGCCACTTTCCCCCTTGTG GTCGATATGA
CDS sequence (LotjaGi5g1v0210400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTATGGCACATTCAGGAGTTTCACACCACTAGTACTGTTGCAGAATTCATTGAATTCTCGAGTGAAATTCTCCTC TAAGTGTTCTCCTAGGAAGATAACAATGGAAGGAAGAAAGCTTAATTGTAGCATGGAGGGAAACATAAACGAGTCTAGAG GTGCCTTAGTTGTTCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAGTGTACCAGACTAGTGTCCTACTTAGAGGGG CAAGGAATCAATGCTGAACTATTGAGATTTCCCGACCGAACCACGAGTGTCGGTCAAATGATATCTGCCTATCTTACTAA CACATCACAATTGGATGATCATACCATTCATCTCCTCTTCAGTGCTAACCGTTGGGAGAAGCGATCGTTGATGGAAACAA AGCTGAAAAGTGGAACAACTCTCATTGTTGATCGTTATTCTTATTCCGGGGTGGCTTTCTCTTCTGCCAAAGGGCTTAAT TTTGAATGGTGTAAGGCCCCGGAGATTGGGTTGTTGGCTCCTGATCTGGTTGCATACCTTGACATATCACCGGAGAAAGC TGCAGAAAGAGGAGGGTATGGAGATGAGAGATATGAAAAGCTCGAGTTTCAGAAAAAAGTTGCTCAGAGTTACAAAGTTC TTCATGATCACTCCTGGAAGCAGGTTGTAGATGCTTGCCAACCCATAGAAGATGTGGAGAAACAGCTACAAGAGATGGTA CTTGATTGTGTCACAGAATGCAGGAAGGGTAGGCCACTTTCCCCCTTGTGGTCGATATGA
Protein sequence (LotjaGi5g1v0210400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYGTFRSFTPLVLLQNSLNSRVKFSSKCSPRKITMEGRKLNCSMEGNINESRGALVVLEGLDRSGKSSQCTRLVSYLEG QGINAELLRFPDRTTSVGQMISAYLTNTSQLDDHTIHLLFSANRWEKRSLMETKLKSGTTLIVDRYSYSGVAFSSAKGLN FEWCKAPEIGLLAPDLVAYLDISPEKAAERGGYGDERYEKLEFQKKVAQSYKVLHDHSWKQVVDACQPIEDVEKQLQEMV LDCVTECRKGRPLSPLWSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 47 | 258 | 212 | 7.6E-67 | – | |
| PANTHER | 48 | 258 | 211 | 1.4E-98 | – | |
| PANTHER | 48 | 258 | 211 | 1.4E-98 | – | |
| TIGRFAM | 53 | 235 | 183 | 1.3E-37 | ||
| SUPERFAMILY | 53 | 244 | 192 | 9.94E-40 | ||
| Hamap | 55 | 244 | 190 | 15.909 | ||
| CDD | 56 | 242 | 187 | 7.10568E-30 | – | |
| Pfam | 59 | 235 | 177 | 5.0E-47 | ||
| ProSitePatterns | 142 | 154 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Thymidylate kinase activity | Catalysis of the reaction: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DTDP biosynthetic process | The chemical reactions and pathways resulting in the formation of dTDP, deoxyribosylthymine diphosphate (2'-deoxyribosylthymine5'-diphosphate). |
Expression pattern of LotjaGi5g1v0210400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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