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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0211400 |
| Transcript ID | LotjaGi5g1v0211400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alba DNA/RNA-binding protein; TAIR: AT3G04620.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160; TrEMBL-Plants: tr|I3SVY5|I3SVY5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0211400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51586900..51589502) extracted from Lotus japonicus Gifu genome v1.2.
ATTCACTCTTACTCTGTCCTCATCCCCTCATAACCGCCACATGTTGGTGTCTCATTAGTTATCGTTGCTAGACTCATGCC CTATATTATTTTATAAACAAGGTTGTAACCTATTTCACTGCTTTACCGTTACAGCTACAGAGATTTGCATCACATTACAT TACAATGGCGACCGTAGCTGCTGCTGCTGTAACTGCAAACGAGTCCCCCAAGAAGAATAGGATTCAGGTTTCCAACACCA AGAAACCTCTCTTCTTTTACGTCAATCTCGCCAAGGTATGATATCACTTTCCATTATTGTTTTCTTATACGATTAAGTGT GTGTTCGGATACCAGAGTTGTAATGTGAATCGATTTTCATCTTAATCCATGAGAAGAATTTTATTCATTATTTATCTTGA AATGTGTGATTGCACGGTGCCAACTGACATTATCGTATGAGTGTTGAATGAAATTTCATAACTTTGTAATTTCTTGCAAT TTCACATGTCATTCATTTACATTCTAATGTTGATTTGAAATTATGATCGACTAATGTCTACCTGAAATGATATAATGTAT TGCTGAATTGGTTTATCCTTTGATGCAGAGGTATATACAGCAGCACAATGAGGTTGAGCTTTCTGCTCTCGGAATGGGTA TCTCTTTTCTCTCAAACTAAACATTTCTCTTCATTTCTACTTGTTCTCTCCACATTGTAAGAAAATCATGAGGAATCATA TAACAATTGTGTTTGGAAACTGGTGTTTCATATGTGAATCTTTTGCATCCGGAATTTTGAATTGTCTCATTGATTATTAC TCAGAACATTATGAGATTCTTTCAACACTTGTAACATTGGCTACCTGTTGTGTGTCTAAGTTTTCCTTTTTAGTACACGT TTGAAAATCTTTCTACAATTGATTTTGATACTAAAACCAATTCTAGTGAGAAGCTTCTATATGTCAAGAATTAATTCTAA GGAAAAAGAAACTAATCAAAACATGCTATTAGCATGTGTTTGAGCATGTTTTGCTCAAGTTGTCCATCAATTGAGCAAAT TTGCTCTGCTTCATCTATTCCTACTTCAACTGATACAATATTCTGCAAAAATGTTGACATCTGTTTGAGCAGCTATAGCT ACAGTTGTCACAATTGCCGAGATTTTGAAGAACAATGGACTTGCCACAGAGAAGAGTAAGATTTCTTTTTGTTTGCTATT GTTGTTATTTATATTATATGATGGTTGTAATGTAGATGCTCTAATCAATTGATTTTGGGATGGAACAGGGGTGCTAACTT CTACAGTTGGCATGAAGGATGAGAACAAAGGGCGTCTGGTACAGAAGGCAAAGGTGAGTTCCCATTGGAATATGGTTTAA ATTCGCAGCATGTTTGGAAGAAATTTTCTCCCATTGATTCTAAAGCTAAAATGAATTTTTGTGATAACTAACTTCAGAAT CAATTCTGATAGAGTATAATCAATGCAGTAACTTCGGTGCTGATATCCAAAATTGATTTAAATTTTACCAAAATCCTTCT CCAATTGATTCAAAGTCAATCAATTATATAGTCAATTATAATTGAGTAAAATTTGGTTCCTCATTAGGTACTTCAAAATC AATTCTAATGGAGTAAAATCAATTTTGAATGACAATGTAGATCTTTGAATCATTTTGGAGAATTGATTGCAGTCTCAAAA TCGAATATACCAGAAGTGGGAGAGAATAGCTTATGCGTTGAACATTATCAATCTGAGATTTTACAACTAAATATCACAAC ATTATCCTACATAAATCACTATTCCGTAAAGGCATCTAAACCTAAACCACATCACTTTCAACTCAACTTCACCATAATCA ATTTTACTAAAATCAATTATAGACAACGCTGATCCAAACACGCTTTCAGTAGCCTCTAGGTACTAGACTTGATTTTGAGA AAAAAGAAATTGATCCAAACATGCTATTAAGCGCTAAAGCTTAAGCTGATGCTTTTATTTTCTCTATTTGGGTAGTTTGT TTCCTTATCTTGTTCTTTTGTAGATTGAAATTGTGCTGGGGAAATCTGAGAAGTTTGACAATCTGATGGCTCCAGCCACC AAAACTGAATCAGAAGAACCAGCAGTTAATGACAAGAAATGACAAACATAGGAGAGCCCAGTGAATGTGGAAGCTGTTGT AGTTAACATTCTGATTCTTTTGTATTGTTTTCCATGATTCATGGACATAAACTATAGGGGAGTAGGAAAGGTTTCAATGA TAAGAACATAAAGCAGCAAATCAGCAATGACTGGTCAAAGTTGTAGAGAACATATTTCCATTCTCACTTTAGATTGTATT TCTTCACTGCATATATATGATGATGACGATTACATTACTAATGATGACTCTTAAGCTCACTGATTATCGTGGTAGTTCAT CTAACCTGCTCTGATTCTGAGCTGCACTCGTCATGTGCCACTATATAGATTTATTTATCTGTGATTTTTCCCATTTATCA TTTTTTAGATATTTTGCATTAGTATAGAAAAACCTCTCATTATATGCGATGTGATGCAATAAGAAGAGAAAGATAGAGAG GGGAAAAAAATCATGGTGTTTTTACTGTTTTATTGTACGCGAA
CDS sequence (LotjaGi5g1v0211400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCGTAGCTGCTGCTGCTGTAACTGCAAACGAGTCCCCCAAGAAGAATAGGATTCAGGTTTCCAACACCAAGAA ACCTCTCTTCTTTTACGTCAATCTCGCCAAGAGGTATATACAGCAGCACAATGAGGTTGAGCTTTCTGCTCTCGGAATGG CTATAGCTACAGTTGTCACAATTGCCGAGATTTTGAAGAACAATGGACTTGCCACAGAGAAGAGGGTGCTAACTTCTACA GTTGGCATGAAGGATGAGAACAAAGGGCGTCTGGTACAGAAGGCAAAGATTGAAATTGTGCTGGGGAAATCTGAGAAGTT TGACAATCTGATGGCTCCAGCCACCAAAACTGAATCAGAAGAACCAGCAGTTAATGACAAGAAATGA
Protein sequence (LotjaGi5g1v0211400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVAAAAVTANESPKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAIATVVTIAEILKNNGLATEKRVLTST VGMKDENKGRLVQKAKIEIVLGKSEKFDNLMAPATKTESEEPAVNDKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 127 | 127 | 1.5E-61 | ||
| PANTHER | 7 | 121 | 115 | 5.5E-67 | – | |
| PANTHER | 7 | 121 | 115 | 5.5E-67 | ||
| Gene3D | 16 | 126 | 111 | 1.7E-48 | ||
| SUPERFAMILY | 17 | 111 | 95 | 2.49E-25 | ||
| Pfam | 18 | 80 | 63 | 4.8E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0211400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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