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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0212500 |
| Transcript ID | LotjaGi5g1v0212500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT3G04730.1 indoleacetic acid-induced protein 16; Swiss-Prot: sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16; TrEMBL-Plants: tr|I3STT1|I3STT1_LOTJA Auxin-induced protein; Found in the gene: LotjaGi5g1v0212500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51746322..51749825) extracted from Lotus japonicus Gifu genome v1.2.
CAAGGTGTGTCTTTAAGAATTCAAACCAAGACATTTGGTATAATCCTTATAATTATCTCATTTTATATAGTTATTTTATG CAAAAACTTTCTCAAAAAGATATTATGGAAATTATGGTTAGGGATCGGAGAGTGAGCATTCATTGGATTCACCGAGATGG AAACTCAGCAGCAGATTGGCTTGTAAAGTATGGCCATAGTCTGTTGTTTCCGAGTGTTTGCTTTATTTCTCAGCCGGTGA GTGAGCTTCAGCTGCTCCTTCTAAAGAATTCTCTAGTTGTGCCTTAGTTTCTATTCATTTTTTGGTTAATTTTCTGATGT ATAAAATAAAAGTAAGAGAAAAAAAAACAAATTAAAATTATGGGAATGAATAATTGTGTGTTAATTGCTTTGTACAGGCA GGCAAAGAAAAAAGGCAGGCAAGAAGGGGCAGGGCCAAACTGGGATGTCCACTACCCACACCACACCACAATCATTCTTC ACACATGACATCACTCATGACATCATTCTCCCGACAACTCCTTATAATCCAACCACAACCAAACCTTCCACGTGGCAACA TCTCCACCCTCGACACAACATCCATATATTACCAAAACCATTACACAACCTCAAAAACTCTTGTTTTCCATTTCCATTCT CTCAAAATCCATAGAAAGCTCCACTTTCTTAATCACTGACTCTGTTTCTGTTTACTTGTTTGTTTGTCTATTCTGATTTC TGACTCAAAGAAGAGAAGTAATGACAAGTGTGGTGGTGGATGCAGAGAGAGACAAGTATAGCATGATAAACTTTGAGGAA ACTGAGCTGCGACTAGGGATTCCCGGCGCCGGTGAGTCTGGTATCAAGATCGGTGGTGGTAGTGGTGGGAAGAGAGGCTT CTCAGAGACTGATGCTAATGTGGATTTGAAGCTTAATCTTTCTTCTGATTTGGGCTCTGCCTCTTCCTCTGTTTCTTCAA CTCTGCCTCCAAACAAAGGCAAGGAGAAAACAGCTGCAACAACACAAGCTAATGACCCGGCAAAACCACCTGCCAAGTGA GTTAGTTCTTATTATATTTCTTATTCCTTTATGTTTGGCTGACTTCATTCTCACAACTTGGTTACTATATATATGTTTAT TTATTTGGGGTGCTTATGCATCACAGCTTGATATTTTAATTACATGTTTTAAACATAGGATAAGCTCTTAAAGTGAATAG TAATCCTGATTTTATTTAAAATACAAGGTGATTTTGGCCCATTATTCACACTTATATATTGTCCTTAAACTTGTTGTTTG AATCTGATATATTGTAAGAAAATAAAGGTTTGGTCCTTGCATGCTGTATTGTTTGTATACTATATATGAAGTATGATTAC TTCTGGACATAATTTTGAAAAATCAGTTGATCATAATTTTATAGTCTTGTGAATGTATTAGAGATTAATTTTAATCCAGA TGACGATACGGTACATTAGATTAGAGTGTGAATTTTGTTGACTAACATTAAAATTAGGTGTAGGAGGGGAAAAAGAAAAT GTCATCCAGATTTTGAGCAAGAAAAAGTAAAGAAGGAATAGGATGGATGGCGATTAAGCAAGTTTAGTTGATGAATTTCC TTTTCTTTTGCGGATGGCATGGTTGGCTGTCGGGTAAACAGAGGAAAAAGACAAGGCATATGGAATCTTCACTTTTTCCG TCCACTTTATGTGAATAAATCCAGCCAACCAGAAAAGGGCACAACAAAATAATAGTCTACCCCCTTGTCATGTCACCTAT ATGACCTAACACACTCCTTCTCTCTCTAATAATTTATACTCGATCCAATAACTTAATATTAACCTTTGAGTAAAATTTGA TCATTATATTTATATGTAAGTTAATTGTATTGAGAACCAACTGCTCATATAAAGTTTAAGCTCTTAGGTAAATAATACTA CATGAATATTTATATATTTCTAACATGCACGTCACATAAGAGGTCACTTAAGGTTGAAGCATAAATAATGCATAGACTCA TCTTTATGTTGAAATTAAATTTTTATTTTAGTAATAACATAAAAGGGTCGAAATCTAACTGTTTAATAATAATTTCATAA AAACATATGAATAATTTTATATTTTAATAAATTGTAAATACATATGAAATTTAATTTTTAAATGATCATTGAATTTGCAG GGCACAAGTTGTGGGTTGGCCACCAGTTCGATCCTTCAGGAAGAACATCGTGAATGTCCAAAAGAGCAACAACAACGAAG GCGCAGAGAAAAAGGTCACCACCACCACCGCCACAACCACCGCAGGCAACAGCGCAGCAGCAGCAGCATTTGTGAAGGTG AGCATGGACGGTGCACCATATCTACGTAAGGTGGATCTCAAACTGTACAAAAGCTACCAAGAACTGTCAGATGCGCTGGG TAAAATGTTCAGTTCCTTCACCACCATTAATGGAAGTTGTGGGTCTCAAGGCATGATGAAGGACTTCATGAATGAGAGCA AATTGATAGACCTTTTGAACGGCTCTGATTATGTGCCCACTTATCAAGACAAGGATGGTGACTGGATGCTCCTCGGTGAT GTGCCCTGGGAGTGAGTGCCGACTTTCTACACACGGCGAAAAAATCACAGTAAATCTAAAATCACAGTTTGACAGATGCA AAAACAAAGAGAGTTTGTATCTGTTAGACCGTGATTTTACTTTAGCGTGATTTTTTTCTCGGCATGCTCTTTATAATTCA AATCTATTTTTAGTTAATTCATGCATGCTCACTAGTTAAGACGATTATTTTCACAGAATGTTCGTAGAATCTTGCAAGCG TCTCCGCATAATGAAAGGTTCTGAAGCAATTGGGCTAGGTTAGTACTCATGACACTGTTTAATTAATTAACTAACTAACC TCCTTCAAAGATTGATTTTATCTTAATTAATATTGTTAATTTCTCATTTTACAGCGCCCAAGGGCAGTGGAAAAGTGCAA GAGTAGAAGCTGAATTGATAGTGTTGATCCTCTGCGTCCCAAGGAAGCAAATTGGTTCGAGCAAGCAATATAGGAGGAAT AAGATCGAGTTTTAATTTACATTGTTATTGTTATTAATTATTATTATGTGTCTGTGCCATCTTTTTCTTTTTTGTAAAAT TTAATTTCGTATATGTGTATTATATGCATGAGAAAATAGTTGGAAATTCCTTAGGGAGGACAATGTAGAAAATGTTTATA TATGACCCCGTTTTTGTTTCCAAGGAAAAACATGTGACCTTGTCCAGTGCCTCCATACTTGACCAATAATAATAAATGTC AATGTTTTCCAGTTAGAATTTCTGGTTCTTGTCCCCTCCTAATTTTAAAATGTAGCTAGACAGCCTCATACAACACTGCA CGTACACGCATCCTTTTTTAAGTGTTTATTTTGAATTTTTGAGATATTAACTTACTAAATGGAGCAAGAATTTAACATTT TTTATACTTCCAAGATAACAAATGTATTTATCTCATTATTTAAGAGTGTCTAAATGACTCATAA
CDS sequence (LotjaGi5g1v0212500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAGTGTGGTGGTGGATGCAGAGAGAGACAAGTATAGCATGATAAACTTTGAGGAAACTGAGCTGCGACTAGGGAT TCCCGGCGCCGGTGAGTCTGGTATCAAGATCGGTGGTGGTAGTGGTGGGAAGAGAGGCTTCTCAGAGACTGATGCTAATG TGGATTTGAAGCTTAATCTTTCTTCTGATTTGGGCTCTGCCTCTTCCTCTGTTTCTTCAACTCTGCCTCCAAACAAAGGC AAGGAGAAAACAGCTGCAACAACACAAGCTAATGACCCGGCAAAACCACCTGCCAAGGCACAAGTTGTGGGTTGGCCACC AGTTCGATCCTTCAGGAAGAACATCGTGAATGTCCAAAAGAGCAACAACAACGAAGGCGCAGAGAAAAAGGTCACCACCA CCACCGCCACAACCACCGCAGGCAACAGCGCAGCAGCAGCAGCATTTGTGAAGGTGAGCATGGACGGTGCACCATATCTA CGTAAGGTGGATCTCAAACTGTACAAAAGCTACCAAGAACTGTCAGATGCGCTGGGTAAAATGTTCAGTTCCTTCACCAC CATTAATGGAAGTTGTGGGTCTCAAGGCATGATGAAGGACTTCATGAATGAGAGCAAATTGATAGACCTTTTGAACGGCT CTGATTATGTGCCCACTTATCAAGACAAGGATGGTGACTGGATGCTCCTCGGTGATGTGCCCTGGGAAATGTTCGTAGAA TCTTGCAAGCGTCTCCGCATAATGAAAGGTTCTGAAGCAATTGGGCTAGCGCCCAAGGGCAGTGGAAAAGTGCAAGAGTA G
Protein sequence (LotjaGi5g1v0212500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSVVVDAERDKYSMINFEETELRLGIPGAGESGIKIGGGSGGKRGFSETDANVDLKLNLSSDLGSASSSVSSTLPPNKG KEKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNVQKSNNNEGAEKKVTTTTATTTAGNSAAAAAFVKVSMDGAPYL RKVDLKLYKSYQELSDALGKMFSSFTTINGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVE SCKRLRIMKGSEAIGLAPKGSGKVQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 260 | 248 | 1.2E-106 | – | |
| PANTHER | 13 | 260 | 248 | 1.2E-106 | ||
| Pfam | 20 | 259 | 240 | 2.6E-83 | ||
| MobiDBLite | 64 | 91 | 28 | - | – | |
| MobiDBLite | 64 | 101 | 38 | - | – | |
| Gene3D | 141 | 262 | 122 | 2.1E-42 | – | |
| SUPERFAMILY | 144 | 249 | 106 | 1.28E-20 | – | |
| ProSiteProfiles | 147 | 250 | 104 | 24.346 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0212500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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