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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0212500 |
Transcript ID | LotjaGi5g1v0212500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Auxin-responsive protein; TAIR: AT3G04730.1 indoleacetic acid-induced protein 16; Swiss-Prot: sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16; TrEMBL-Plants: tr|I3STT1|I3STT1_LOTJA Auxin-induced protein; Found in the gene: LotjaGi5g1v0212500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51746322..51751388) extracted from Lotus japonicus Gifu genome v1.2.
AGAATTTTGTATTGTTGGAGCATGGTGGCTAGTTGTTGATCATTGAGTTTGAAACACATTAGTCTGGTTGTTCTTGTACA ATTCCTTGCAGTGACCTAGGAGCTCTTAGAATCGAGCAAGTTGAGGTCAGTGCTTGCACTCCATATATGCGGTGTTGCCG TGTTGGTTATTGAGGCATTGCATGAAGGTCGCAACACATTTTTTTTATTACTGTACAAATCTTACTATTTTTATTTCAAT TATTGATTTGGTTATTCTTATATTTTATTTTTAAAGTATTGGTGATCATTTTAGAAGAGTTAAGTTTGTGCTTATTGTAA ACGGATTAGATATATGAGATTATGATTTCAAACATCATTCTCACTGTTAAAGAATAACACGATAATGCAAAAAAGTCTAA AATCTAAATATATATATATATATATATCAAAATTAGAGTGATGTTTATGAAATAAGCAACAATGGAACTTATAAAGCATA AGGACCTATCCCCTTGTGGGACTCTTTAGATATAGCCACCACGAAAAGTGGACTGATGAGGATAAGTGTGAAGTTAAAAT GGTATAATATTATATTGCCAGACATAATGATAACAACCCTTATCTCTCTTTTCGTACACTTGATCTTTTTTTGAAAGGCT ATACTTGATCCTTATGCGCATTTTATCATTTTTAATTATTTGTATATTGATGGGCTTTTTTTTGTTTCGGCAATACACAT TGCGTGGGTTGCTTAGTATTGAGCCCACGTATGGCATGGGTTGCCAATTGTATTTCCAGCAAAAAGAAGATTTTGATCAT TAAACAAATTTTTGAAAAAAAAATTAAGTTATACTCCCTCCGTTTTTAATATAAAATTCTTTATAAATTTATGGTATCCA TTTATATAAGACCTACTATATTTCAGAAAAAATTATTACATTTTTTTTACAACCCTTGTATTTATTAAACTTTTGTAATT TCAAAATTGTGAAGATTGTGTAAACTTTTTCTAAAATAAATACATCAATCAATTAGCTTCGTTATATGTTTTTTGATTAT TGTTTGTCTCAAGGGGTCTTATATATTATTAGGAATGGAGGGAGTAATTTTTTAGGAACATCAGAGTTAATAGTTTTTAA AATAACATATATAAAATTATTTATATTAAAAATAAAATAAATTACATCAAATTGTTCATAATTTAAAAAATTAATATAAG TACTAATTATTGATTTAGTTCCTTTCAAAAAAATTATTGATTTAGTTATGTTATATTTTAATTTTAATAATAATTTCAAT ATTTGTATAATCTTTTAGTACGGTTCAACCATTAACTCATTGGTTAAACTAGTTACTCATTGATATGGTACCTCTACTGA GTATGTTATCGAACTGAGTTTAATAACACTAATTGTTACTTTAGATTTTGTTTCCGAATTTTGACAGAAATCATCACCCA TTTAATAAACGGTTTAATTTCTCATTTAATAAATGTCTATTATGAGAATTCAAATTCTCTCTCTCATTCTTATATATAGG GGTATAGAATATAGGGATATAACTAGTTTATCACCTCACCAATCAAGGTGTGTCTTTAAGAATTCAAACCAAGACATTTG GTATAATCCTTATAATTATCTCATTTTATATAGTTATTTTATGCAAAAACTTTCTCAAAAAGATATTATGGAAATTATGG TTAGGGATCGGAGAGTGAGCATTCATTGGATTCACCGAGATGGAAACTCAGCAGCAGATTGGCTTGTAAAGTATGGCCAT AGTCTGTTGTTTCCGAGTGTTTGCTTTATTTCTCAGCCGGTGAGTGAGCTTCAGCTGCTCCTTCTAAAGAATTCTCTAGT TGTGCCTTAGTTTCTATTCATTTTTTGGTTAATTTTCTGATGTATAAAATAAAAGTAAGAGAAAAAAAAACAAATTAAAA TTATGGGAATGAATAATTGTGTGTTAATTGCTTTGTACAGGCAGGCAAAGAAAAAAGGCAGGCAAGAAGGGGCAGGGCCA AACTGGGATGTCCACTACCCACACCACACCACAATCATTCTTCACACATGACATCACTCATGACATCATTCTCCCGACAA CTCCTTATAATCCAACCACAACCAAACCTTCCACGTGGCAACATCTCCACCCTCGACACAACATCCATATATTACCAAAA CCATTACACAACCTCAAAAACTCTTGTTTTCCATTTCCATTCTCTCAAAATCCATAGAAAGCTCCACTTTCTTAATCACT GACTCTGTTTCTGTTTACTTGTTTGTTTGTCTATTCTGATTTCTGACTCAAAGAAGAGAAGTAATGACAAGTGTGGTGGT GGATGCAGAGAGAGACAAGTATAGCATGATAAACTTTGAGGAAACTGAGCTGCGACTAGGGATTCCCGGCGCCGGTGAGT CTGGTATCAAGATCGGTGGTGGTAGTGGTGGGAAGAGAGGCTTCTCAGAGACTGATGCTAATGTGGATTTGAAGCTTAAT CTTTCTTCTGATTTGGGCTCTGCCTCTTCCTCTGTTTCTTCAACTCTGCCTCCAAACAAAGGCAAGGAGAAAACAGCTGC AACAACACAAGCTAATGACCCGGCAAAACCACCTGCCAAGTGAGTTAGTTCTTATTATATTTCTTATTCCTTTATGTTTG GCTGACTTCATTCTCACAACTTGGTTACTATATATATGTTTATTTATTTGGGGTGCTTATGCATCACAGCTTGATATTTT AATTACATGTTTTAAACATAGGATAAGCTCTTAAAGTGAATAGTAATCCTGATTTTATTTAAAATACAAGGTGATTTTGG CCCATTATTCACACTTATATATTGTCCTTAAACTTGTTGTTTGAATCTGATATATTGTAAGAAAATAAAGGTTTGGTCCT TGCATGCTGTATTGTTTGTATACTATATATGAAGTATGATTACTTCTGGACATAATTTTGAAAAATCAGTTGATCATAAT TTTATAGTCTTGTGAATGTATTAGAGATTAATTTTAATCCAGATGACGATACGGTACATTAGATTAGAGTGTGAATTTTG TTGACTAACATTAAAATTAGGTGTAGGAGGGGAAAAAGAAAATGTCATCCAGATTTTGAGCAAGAAAAAGTAAAGAAGGA ATAGGATGGATGGCGATTAAGCAAGTTTAGTTGATGAATTTCCTTTTCTTTTGCGGATGGCATGGTTGGCTGTCGGGTAA ACAGAGGAAAAAGACAAGGCATATGGAATCTTCACTTTTTCCGTCCACTTTATGTGAATAAATCCAGCCAACCAGAAAAG GGCACAACAAAATAATAGTCTACCCCCTTGTCATGTCACCTATATGACCTAACACACTCCTTCTCTCTCTAATAATTTAT ACTCGATCCAATAACTTAATATTAACCTTTGAGTAAAATTTGATCATTATATTTATATGTAAGTTAATTGTATTGAGAAC CAACTGCTCATATAAAGTTTAAGCTCTTAGGTAAATAATACTACATGAATATTTATATATTTCTAACATGCACGTCACAT AAGAGGTCACTTAAGGTTGAAGCATAAATAATGCATAGACTCATCTTTATGTTGAAATTAAATTTTTATTTTAGTAATAA CATAAAAGGGTCGAAATCTAACTGTTTAATAATAATTTCATAAAAACATATGAATAATTTTATATTTTAATAAATTGTAA ATACATATGAAATTTAATTTTTAAATGATCATTGAATTTGCAGGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCCTTC AGGAAGAACATCGTGAATGTCCAAAAGAGCAACAACAACGAAGGCGCAGAGAAAAAGGTCACCACCACCACCGCCACAAC CACCGCAGGCAACAGCGCAGCAGCAGCAGCATTTGTGAAGGTGAGCATGGACGGTGCACCATATCTACGTAAGGTGGATC TCAAACTGTACAAAAGCTACCAAGAACTGTCAGATGCGCTGGGTAAAATGTTCAGTTCCTTCACCACCATTAATGGAAGT TGTGGGTCTCAAGGCATGATGAAGGACTTCATGAATGAGAGCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTGCC CACTTATCAAGACAAGGATGGTGACTGGATGCTCCTCGGTGATGTGCCCTGGGAGTGAGTGCCGACTTTCTACACACGGC GAAAAAATCACAGTAAATCTAAAATCACAGTTTGACAGATGCAAAAACAAAGAGAGTTTGTATCTGTTAGACCGTGATTT TACTTTAGCGTGATTTTTTTCTCGGCATGCTCTTTATAATTCAAATCTATTTTTAGTTAATTCATGCATGCTCACTAGTT AAGACGATTATTTTCACAGAATGTTCGTAGAATCTTGCAAGCGTCTCCGCATAATGAAAGGTTCTGAAGCAATTGGGCTA GGTTAGTACTCATGACACTGTTTAATTAATTAACTAACTAACCTCCTTCAAAGATTGATTTTATCTTAATTAATATTGTT AATTTCTCATTTTACAGCGCCCAAGGGCAGTGGAAAAGTGCAAGAGTAGAAGCTGAATTGATAGTGTTGATCCTCTGCGT CCCAAGGAAGCAAATTGGTTCGAGCAAGCAATATAGGAGGAATAAGATCGAGTTTTAATTTACATTGTTATTGTTATTAA TTATTATTATGTGTCTGTGCCATCTTTTTCTTTTTTGTAAAATTTAATTTCGTATATGTGTATTATATGCATGAGAAAAT AGTTGGAAATTCCTTAGGGAGGACAATGTAGAAAATGTTTATATATGACCCCGTTTTTGTTTCCAAGGAAAAACATGTGA CCTTGTCCAGTGCCTCCATACTTGACCAATAATAATAAATGTCAATGTTTTCCAGTTAGAATTTCTGGTTCTTGTCCCCT CCTAATTTTAAAATGTAGCTAGACAGCCTCATACAACACTGCACGTACACGCATCCTTTTTTAAGTGTTTATTTTGAATT TTTGAGATATTAACTTACTAAATGGAGCAAGAATTTAACATTTTTTATACTTCCAAGATAACAAATGTATTTATCTCATT ATTTAAGAGTGTCTAAATGACTCATAA
CDS sequence (LotjaGi5g1v0212500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAGTGTGGTGGTGGATGCAGAGAGAGACAAGTATAGCATGATAAACTTTGAGGAAACTGAGCTGCGACTAGGGAT TCCCGGCGCCGGTGAGTCTGGTATCAAGATCGGTGGTGGTAGTGGTGGGAAGAGAGGCTTCTCAGAGACTGATGCTAATG TGGATTTGAAGCTTAATCTTTCTTCTGATTTGGGCTCTGCCTCTTCCTCTGTTTCTTCAACTCTGCCTCCAAACAAAGGC AAGGAGAAAACAGCTGCAACAACACAAGCTAATGACCCGGCAAAACCACCTGCCAAGGCACAAGTTGTGGGTTGGCCACC AGTTCGATCCTTCAGGAAGAACATCGTGAATGTCCAAAAGAGCAACAACAACGAAGGCGCAGAGAAAAAGGTCACCACCA CCACCGCCACAACCACCGCAGGCAACAGCGCAGCAGCAGCAGCATTTGTGAAGGTGAGCATGGACGGTGCACCATATCTA CGTAAGGTGGATCTCAAACTGTACAAAAGCTACCAAGAACTGTCAGATGCGCTGGGTAAAATGTTCAGTTCCTTCACCAC CATTAATGGAAGTTGTGGGTCTCAAGGCATGATGAAGGACTTCATGAATGAGAGCAAATTGATAGACCTTTTGAACGGCT CTGATTATGTGCCCACTTATCAAGACAAGGATGGTGACTGGATGCTCCTCGGTGATGTGCCCTGGGAAATGTTCGTAGAA TCTTGCAAGCGTCTCCGCATAATGAAAGGTTCTGAAGCAATTGGGCTAGCGCCCAAGGGCAGTGGAAAAGTGCAAGAGTA G
Protein sequence (LotjaGi5g1v0212500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSVVVDAERDKYSMINFEETELRLGIPGAGESGIKIGGGSGGKRGFSETDANVDLKLNLSSDLGSASSSVSSTLPPNKG KEKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNVQKSNNNEGAEKKVTTTTATTTAGNSAAAAAFVKVSMDGAPYL RKVDLKLYKSYQELSDALGKMFSSFTTINGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVE SCKRLRIMKGSEAIGLAPKGSGKVQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 260 | 248 | 1.2E-106 | – | |
PANTHER | 13 | 260 | 248 | 1.2E-106 | ||
Pfam | 20 | 259 | 240 | 2.6E-83 | ||
MobiDBLite | 64 | 91 | 28 | - | – | |
MobiDBLite | 64 | 101 | 38 | - | – | |
Gene3D | 141 | 262 | 122 | 2.1E-42 | – | |
SUPERFAMILY | 144 | 249 | 106 | 1.28E-20 | – | |
ProSiteProfiles | 147 | 250 | 104 | 24.346 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0212500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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