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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0213800 |
| Transcript ID | LotjaGi5g1v0213800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I3SP97|I3SP97_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0213800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51916085..51920930) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAAGTCATTTTAACCCTATCCAACGGTCACTGACTAACCTACATACGACAAACACAGTAAAATGTTGATGTCTTCTG ATATGTAGTCACTTAGGTTGTTTTGTTCCCTTCAAATAAAGAGGTTCCACCGGTAATTTAACACAAAACAAGAACAGGAA GAGTAAGAACTAGAAAGAGAAGAAGAGCTTCTTCATCAATATCAGTTTTGCTTCTCTATTATTGGTGGGGTTTGAGGGTT ACACTACACACAGTACTTATTGAATGTATCATGGGAGAGTCAAGTGATTCTGTCTCCATTGACATTGATTTGATACCTTT AGGAGGAAAGGTAATGAAACTTAACACATTACAAGTGGGTTTAGCTTGTGTTTGTTCCATAATCAATCATATACTTAATG TAGCTTATGCTTTTTGGATGTTTGCAGGAATGCACTGTGAAAACTAGTAAAGGTTCTGTCTCTGTGCTTGTTTGTGGAGA TCAAGATAAACCTGCTCTCATAACTTACCCGGATGTGGCTCTCAATTGTATATTTCTTACTTAATTTGCTTTTTTTTATG AATGGATGTCATGAAGTTGTTTACTTTTGACTGCTATGTGTTTGTTTATATGTTTGTGTGGATATCTTTTGAATTAGAAG GAGAACTTGATTTGGCATTTTTTTTTTTGCAGATGTGTCCTGTTTCCAGGGTCTGTTGTTCTGCCCAGAAGCAGCTTCTT TGCTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAGGTCAGTATCAGCATTCTCTTCCTAGTGTTA CTTCCCTTTCTTCCATGTCATCACTGCAGTAACATGTTAGCTAGTTTTACTTCATCGAGCTTCAGCGTAGCTACTAGCTA ATGAGGAGCTTTGATATCATTGAGTTGTTAGAAATATAACATAAAACCATTTAGAATCCTTTACCCAACAACTGAAGCTT TTGGGTTAATTGCTTCTTGACATGAGTTCATTTACATCCATGTTTAAATGGGGAAGGGCTAGGAAGTTGGTTAATAAAAA TGAGTGGTGCTTTTTAAGTTCACCCATGAAAAGGATTGAGGAATTTTAACTTGCCATGAAATATTTAATACTAAGCTGTC AATTAAGCTAGGAGTTGAATTGCATATTAATGTTCTTGGACACTCTCCTCTCCTAGAGTATAATCGATTCTTTTCTCATT TGTTTAAGAGTTATTGCAGTTGGGAGCTGATGAGATTTCTTTAGATGAACCCTTGCTTTGTGTGGATGACCTTGCAGACC AGGTTGCAGAAGTGCTTGATTTTTTCGGGTATGTAAAGCATCAGTGATTCACCTTTGCTCTTAACCTAAACGTTGAGTTG TTGAATTTTGTACTACCTTTAGAATGTATTCCCCTATTGTTTGTTTGCACGGGAAGAATATGATACCTAATGATGTCCAA ATAGACTGTGTGCATTGCTGGATAAATTAAGCAAAAGGGAAGTGACTGCATATGCATATATAGAATCTTTATGTCAAGGA ACTCTAGTATTTGTTATTGAAGACTTTTTTAGATTAGCGAAACACATTGCTTTGATATTCTTGGCTTAGGATTTTAACCT TTGTCCAAAACTGTCTTAAATCAGGCTGAGGGAGGTTCTGTGCTTGGGTGTTACAGCTGGTGCTTACATCCTGACACTAT TTGCCGTAAGTTGGCAACCTTAAGATAATTTTATCTATTACAACAATTTGGTATAGTAAATCTCCTTGCCCTTTTCTCTT TTTGCAGATGAAATACAAAGAGCGAGTGCTTGGATTGATTCTTGTTTCGCCTATTTGTAAAGAACCTTCATGGACTGAAT GGCTATACAACAAGGTTCTAAACTCTGCCAGCATGCTTTTACTATGTTATCAATTGAAGTACCTGCAACTAGATTAAGGA AATTAGTAATCCATTCCTGGCCAGGATGATACCTATTTAGAACGATATGAAAAAAGTAAAATAGATGTGTGTCTGCAATA GCAATACAAGTCCATGTTAGCACCATTGGCTATCAATCCCATGTGTACCTCAGAAGTTATAATGCAACCAAAAGAAGAAC AATATTCACTGCCCTTGAAAATAGAAGCTCACATATGGTTTTCTACATCCAATTCTGCAGGTCTTGATGAATTTGTTGTA CTTCTATGGTATGTGCGGTTTACTGAAAGAATGCCTTCTGCAGCGTTACTTCAGTAAGGTACTCTTTCCATTCTTTAGCT CCTCTTCATGAAGGTCGAATCATTTCTGCAGCTCACATTACATTTCTACATCTTTTATAGGAACTTAGGTGCAGTGTCCA GGGAGCAGAATCAGAGATAATACTAACTTGCCGAAGAGTATGTACATCTCAATTGGGTGACAACTAATACGTATTAACAT GCACATTTATTTGGGATTAGGGATAATTTTGTATGTGTACAATTCTGACATGTGGATCCTCTTTTCTGATCTTCAATTGC AGCTTCTGGATGAAAGGCAAAGCTTGAATGTTCTGCGTTTTCTTCAAGCAATTAATGTGTAAGTTACAATGTTTTTGACT AATTGCAATTGTTTTCTTCAGCTTTCTCTTGGTCTCTCCATTTGTTCGCTTCCTCTTGGTCCCTCTCGGTTTTTAATTCA TCTGAGCCATTGTATACAACTGTGTAACTCCCTGAATCATGTTCTTATTCATGATAACCTAAGTATTCTTGGAAGTACAT ATGAACTTCGCTTGACTTGTATGTTATGCAATCAAGTCGTTGGAAAATTCTTTTCTACAATTAGATTTGCATGGTAATAG TTACTTCTAGGCTGTGACTTGTTGGATTTTGGGTGGACAAATACATCTGAAACAAAAAAAGATACAAAAGATTACTATTT CTTATATGTTGGATTTTGCTTAACTGCTTGCAGAAGGCACGATCTCACTGAGGGTCTGAAGAACTTACAATGTAAGACGC TTATATTTGCAGGGGAGAGTAGTCCATTCCATGCTGAATCTGTCTACATGAGTACAAAAATCAACAGAAAAATCTGTGCC TTTGTTGAGGTAATAAGAAGTAAGATAATAGAAGAGCCTTCGTGAATCTGATTATGAAACACAAACACAAATAACATGAT TATTTTGCAATGCTTAGGTTCAGGCTTGTGGCTCACTTGTAACAGAAGAGCACCCAAACTCCATGATAGTACCGCTCCAG TGCTTCTTAACGGGTTTTGGCTTCCACAGACAATCACACTTAGCTTCCTCGTCAAGCAATGGCTCAAATCCAGCAAGCCC CACAAGTCCTTCATGCATAGCACCAGAACTCCTCTCCCCAGAGAGTTTAGGAATTAAGCTCAAGCCCATCAGAACCCGTG TTCGTGTTGAAATCTAACTTAGTCCAGCTCAAAGGTCTACGATGGATTCAGCTCTTTAGCATTGCACATACTATATAGCT CTTGTTGAATGTACAACATCACTAGTGTAAGATATATTCTTTGATTCTGTTTATGTACTAATTACCATTTTTGTTAAACT GATATTTTTCTTGTTACTGTAAAACTAGTAGGAGGAGGGTTGCATTTGACAATAGGATTATTCTTTTACAAATTTGATTT TTTGAGGTAGATTCCCTATGCAAAGTACATTGCGATGTAGAACCTATTCGTGCTTATTGGTGATTCATTATGAACCAATT TTATTGCTAACTTTGTCATTGTTTCACTATTATAGTTCGCTGATTGAAATTCTTGCACTAAAAAGTGCATGTAGGTTGCT TGCTTTGCTCTGTTTTATGTTAAGGATTGAACTTCTTTATCAATAATGCATTTACTTATCTTCCTCATCTAGTATAATTA ATCTTCTTAATCAATGTAACATTTTACTTGTCTTCCTCATCTAAAATAATTAATTATAACACATGAAAAAGTGAATCATT TGCTCCAGATTTGTTGAATCAATCTTCTCATGTGGCACAATACTACTGAAAATTCTGGAAAATAGTACACAATGTGCAGA ATGCAACTTATAATAATAATTCATGGCCAAGTATGCTACAATATACATAAATTCATGGTTATTAGCAACCATGTGACATG TAGCAAAATCTAAAACAAAATTCAATTCAAATTGCCAATTTAATCTTAATTTGGATCACCAAATTCTTCACCATCTTTTA AATAGGAACATGTCGTTTCAAAGCTTGCTTCCCAGCAACCGCGGCCGCCGCCGCAATTCCTCCAATAGCACCGGCAATAG CAGCTGATCGCGGCCCCGCCGCCGCCCTGTAAAGCGCTCCGGTACCAAGTCCAGCAACAGCGCTGTTGACCAAGTCATCC CTACCCCTGAGATGAATCATACCACTCTCCAACCCGGCAAAGATCAACCCCAACACCCCAAGCGAGTTTCCAAGCCTGCG ACCGCCCTGGCCCCCCGAGTTAAGAACCCGGCTGAGCCGGACCTTGAGCGACTCGCCGATCTCCGCGGCTTTGAGACCTT CAACGGTCCCCCTGGAGCCGCCGATGATGGCGCCGGCGAGGTAGGCGGAGCCGGTGTAGAACTGGAGATTGTCGCCCCAT GATCGGTGGGTCCTGGCGGCTTCTTCAGGGAAGAGGTGCTCCGGTGAGGTGGGGAGGTTGTAGAGCTTTTGGATGGGGAC GTTGAGGTCTTGGTAGGGATGGTAGAGACGTGTCTTCTGGTCGTTGTTGGGGTTGGTTGAAGAATCCGCCATCGCCGTTT GAAGAAGAGAAACAAGTTGCGATTCTAATGCTATTTTCTATGTGAACGTTGTTGTAGGGTTTAAGGGTGATCAAGGGTTT TAGTTTAGACCTAATTAGTGATTAATTAAATGTGATAAAAATCAAC
CDS sequence (LotjaGi5g1v0213800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGTCAAGTGATTCTGTCTCCATTGACATTGATTTGATACCTTTAGGAGGAAAGGAATGCACTGTGAAAACTAG TAAAGGTTCTGTCTCTGTGCTTGTTTGTGGAGATCAAGATAAACCTGCTCTCATAACTTACCCGGATGTGGCTCTCAATT ATGTGTCCTGTTTCCAGGGTCTGTTGTTCTGCCCAGAAGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTATCACATT GATGCTCCGGGGCATGAGTTGGGAGCTGATGAGATTTCTTTAGATGAACCCTTGCTTTGTGTGGATGACCTTGCAGACCA GGTTGCAGAAGTGCTTGATTTTTTCGGGCTGAGGGAGGTTCTGTGCTTGGGTGTTACAGCTGGTGCTTACATCCTGACAC TATTTGCCATGAAATACAAAGAGCGAGTGCTTGGATTGATTCTTGTTTCGCCTATTTGTAAAGAACCTTCATGGACTGAA TGGCTATACAACAAGGTCTTGATGAATTTGTTGTACTTCTATGGTATGTGCGGTTTACTGAAAGAATGCCTTCTGCAGCG TTACTTCAGTAAGGAACTTAGGTGCAGTGTCCAGGGAGCAGAATCAGAGATAATACTAACTTGCCGAAGACTTCTGGATG AAAGGCAAAGCTTGAATGTTCTGCGTTTTCTTCAAGCAATTAATGTAAGGCACGATCTCACTGAGGGTCTGAAGAACTTA CAATGTAAGACGCTTATATTTGCAGGGGAGAGTAGTCCATTCCATGCTGAATCTGTCTACATGAGTACAAAAATCAACAG AAAAATCTGTGCCTTTGTTGAGGTTCAGGCTTGTGGCTCACTTGTAACAGAAGAGCACCCAAACTCCATGATAGTACCGC TCCAGTGCTTCTTAACGGGTTTTGGCTTCCACAGACAATCACACTTAGCTTCCTCGTCAAGCAATGGCTCAAATCCAGCA AGCCCCACAAGTCCTTCATGCATAGCACCAGAACTCCTCTCCCCAGAGAGTTTAGGAATTAAGCTCAAGCCCATCAGAAC CCGTGTTCGTGTTGAAATCTAA
Protein sequence (LotjaGi5g1v0213800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGESSDSVSIDIDLIPLGGKECTVKTSKGSVSVLVCGDQDKPALITYPDVALNYVSCFQGLLFCPEAASLLLHNFCIYHI DAPGHELGADEISLDEPLLCVDDLADQVAEVLDFFGLREVLCLGVTAGAYILTLFAMKYKERVLGLILVSPICKEPSWTE WLYNKVLMNLLYFYGMCGLLKECLLQRYFSKELRCSVQGAESEIILTCRRLLDERQSLNVLRFLQAINVRHDLTEGLKNL QCKTLIFAGESSPFHAESVYMSTKINRKICAFVEVQACGSLVTEEHPNSMIVPLQCFLTGFGFHRQSHLASSSSNGSNPA SPTSPSCIAPELLSPESLGIKLKPIRTRVRVEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 119 | 119 | - | – | |
| PANTHER | 1 | 351 | 351 | 1.7E-221 | – | |
| PANTHER | 1 | 351 | 351 | 1.7E-221 | ||
| Gene3D | 17 | 300 | 284 | 3.5E-69 | ||
| Pfam | 23 | 304 | 282 | 1.1E-98 | ||
| SUPERFAMILY | 30 | 290 | 261 | 1.66E-24 | ||
| Phobius | 120 | 139 | 20 | - | – | |
| Phobius | 140 | 165 | 26 | - | – | |
| Phobius | 166 | 184 | 19 | - | – | |
| Phobius | 185 | 353 | 169 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0213800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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