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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0215200 |
| Transcript ID | LotjaGi5g1v0215200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine synthase; TAIR: AT3G04940.1 cysteine synthase D1; Swiss-Prot: sp|Q43317|CYSK_CITLA Cysteine synthase; TrEMBL-Plants: tr|I1LBI3|I1LBI3_SOYBN Cysteine synthase; Found in the gene: LotjaGi5g1v0215200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52075890..52082876) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAAAGATGAATATAAATAATTTTTTCTTTCAAAATGAAAATAAAAAGGCATCCTACAAGTGGTATTTTTTAACTAAA GAAAAGAAAACATGACAGCTTTTCATCAACACAAATAGGTGACATTTTTTTTGTCGAGACAAAAAGGTATCACAAACGGA AGATGCTATTATAATAAAATTAAAAAAAAAATGTTGGGTAAGCTCAATCAAGAGTAGACACTCGCGTTAGCTCGGTTAGT AATGGAGGCTGAATGTTTGAAAAGAGCTCTCGATTTCAATCTCCAAACAACTGTAACTAAATTTTAAATCTGGAATAGTC GAACATTGGAATGGTGACCGAATATTGGATAGTTTATACCTAAAATCAAGAGTAGACATTGCAAGAAGAAGCTGACTAAA ATAAAGAATAAAAAAAGATAAATGTGATAATGTTAGATGATGAGAAAAAAAATGGTGCATGGATATAACCCTTGAATGTT TAAAAACCGTAATGTTAGGAAAAATTCCAACCACAACTAGTTGATTGACTTCATTCTTCTTTTGTGTCTTAAACTTCCTC GTCTTCTACACTTTGGCAGCTTCCTGTTGACATTGAAGACAAGTTTTCAAGCTGAGTTTTGGGTAGTTCTACTTTTCTAA TCTCCATGTTTTCAATTTTGGTTTCATCTCATATCTGCTCATTGATTGTTGAACTGTGCTGATATTTTCCTTTGCTGGTG CTTCTTGGTTACTGCAGATTTTAGGTAACCAATAGGCAAACCCTGTAATTGTTGGTGATCAATTATTTGATTGGCAATTT ATTCACTTTTTCAACTGAATTCTCACCTTTTAGTCTTTTACTTGGTCCTGCTTGCAGATATTGTAGCTAACATGGAGTCA CAATGTGCAATCAAGAAGGATGTCACTGAAGTAATTAATACTTTGTCATTCTGACTAATAATTAGCTTGTTGTATTTTTA TATTTATCTTTAGCTTTCTAAGTTAATAATTAGCTTCTTTCCTTCATTGTGCAGTTAATTGGGAATACCCCAATGGTATA TCTGAAGAACATAGTTGAAGGGTGCGTGGCCCGTATCGCTGTTAAGCTCGAATACATGCAAGCCTGTGGTAGTGTCAAAG ATAGGTATGGAATTCCTTTCTTTCCCAAACTAGATAGCTGTCTGGAAGTTTAGGTTTTAATAATCTCATTTTGCAATTAA GAATTTGTAATGATAATCTTCTTTTTTCTCACTCAGGATAGCATTGAGCATGATTGAAGATGCTGAGAATAAAGGCCTCA TTACGCGTGGGAAGGTTAGCCGTGTTAAAGATACATATCTAGAGTTTTTTGTGTGGCGTTAGGCCTATAATAGGACAGCC ATACACTTCTACTCACATGATTTTAAATGGACAACTATGTTATTCAAATTCTATCACTAAATTTCTTTCAACTGTGATTA GAAGGGGAAAATCAGGCATGGGTGCTTGTAAGGTTCTTAGCTGTGTGGTCTATTTGGATTTACCAGAATGAGATCATGTT TAAGCTGTAGAGTTTTGATCTTATTTAAGACCTGATTAAAATTGTATCTTGGATGTGGTTTTCAGCTAGAACAGATGGGG TTTGGAATATTTTTAGATTGCTGTAGGTGTCCTTGACAGTGTTTAAAACAATCCTGACAAAGTTTAATGCATTTTAAGAT TTTTGCATGTATATAGGTTTGATTGCCCTTATGAACTATAAATGATTATGTAATCTTCTTTTTGCTGAAAAAACAATAAT GCCTTACAGCTTTATCAATCCTTACTATAAATCCTCCATCATATTCTATAATGGCCATGTTTTATGGAGATTTTACAATA TTACTACTTATGATATTGAAGTGAGGGCCTCTTCAGCCACTTATTGTATTGTTGATATGGTGACACGATCTAAGTTTAAT CTTTTTGGGCAATTGTTGAAAAGACTATTCTTGTTGAGCCTACAAGTGGTAACACCGGCATAGGGTTGGCATTCATAGCA GCATTGAGGGGCTATAAAGTTATTGTGGTTATGCCATCTTATGTGAGTCTTGAGAGAAAAATTATACTGAGAGCCTTTGG AGCTGAGGTATATCTCACAGACCCTGCCAAAGGAGTTGACGGCGTTTTTCAGAAGGCAGAAGAGATAGTAGCTGAGACGC CCGGTAGTTATATGCTCCAGCAATTTGAAAATCCTGCGAACCCCAAGGTATTCTTATCATTCATAGATATTTCTTAATTT GGTTAATGGGTTGAGAAAGATTGCATCAGATTAATTAATTTCACACCCTTGTAGATTCATTATGAGACCACTGGCCCTGA GATATGGAGAGATTCTGGAGGGAAAATCGATGTTTTCGTGGCAGGGATAGGAACTGGAGGAACAATAACAGGTGCTGGGA CTTTCCTCAAGGAGAGAAACCCAGAGATCAAGGTTGTTTTATTACCAATATGCATACTGTCTGGGATGGGAATGATTGTG TGAACAGTTTTTCTTGATATGAACTGATGGTATACGATGCTTTTCCCCCTAGGTATATGGTGTAGAACCTGCTGAAAGTG CAGTTTTGAATGGAGGAAAGCCAGGTGTGATATTATCATGCTTTATTTTGAGCAACTCACTAGACAACTACTTTGAGGCT ATTTACTGATTTGTTTTTCCTTTTTCAATGTCAAAGGCAAGCACCTAATCCAAGGGATTGGTGCTGGTGTCATTCCCCCA ATTTTGGATGTTAATCTCATAGATGAAGTTATTCAGGTAACTCAACGCTAGTATTCAATTTTCAATTTTGATCCAGAAAC TGGCCATCTCCTTTCATTTAGAATGAGACCTTTGTTTCTTTTTTTTGGCCAAAATGCAACCTAATTAATTCTGAATCTTT GATTCATGATGCACCTTAATATTTTCTATTAAGGGATTATGGATTAGAAACTTACAACAAGGTTTTATGAGCTGCAGGTT TCAAGTGAAGAAGCTATAGAAACTGCTAAGATGCTAGCCTTGAAAGAAGGTTTACTGGTATGGCAAGGATAACTTGTTAA CTTTACAAGTATTCAATACATTGATTAATTAGTTTGGTTAAATATGAACTTTCTGCATTTATAATTGGAAATATGCAACG CCTTGTGCAGATGGGAATTTCATCAGGAGCTGCAGCAGCAGCAGCAATAAAATTGGGGAAGAGACCAGAAAATGCAGGAA AGCTAATTGTTGTAAGTTTCTAATCCATAATACTGATACCAATGCATGTGATGTGAATTTACAAAATATTATTAGTTAAT ATAAATTCTGAATCATGTTGCTGTGCAGGCAATTTTTCCCAGTTTTGGAGAGCGTTACTTATCTTCCCCACTGTTTGAAT CCATTAGGCATGAAGCTGAACAAATGACATTTGAATAAGGTGCATACATGAACAGCTGAAATAAGTACTCATCAAGTACT CGTGAAGCAAGCTCTTCTATCATAAGCACGGTCTCCAATAAGTTGAATCACGTTTGGATTTACACTTTGTATAGGGACTT CACAAAGTGTTGGTGCTGAAATGGAATATTCATAAATCATAAATATTAACTTAGTTGATTTTTGCATTTGCAACTGCTTG TATATGAATTTCCAGTATTGTTTAGGGCTCATCCAAATGGAAAAAACTCTTAACTCGTCCAAAATCTCACAATATTTAGA GATCCAAAAGCTGTGACAGTGCAATACCGTAGTCTCAAGATTTTTAACCTAAGCAAAAGTTTTCTACCATGTATAACTGT GATTGCTGGGCAATACACGATGACAATGTCTTGAAATGTACAGAAATGAAGTGGAAGACATAATTTTGTCTAAATAGCGC CGGGGAATTATTGTGGATTTTTTTACCAATTAGCTGGAAAATAAACCCCCACTTACAGACTTAGGGTGTGTTACATTTCC TCAGTGTTTAATTCTGTGTCATAAACATCATGTTGGACAATTAAATAAGAAATTAAAAGATTTAGTTGAAATTCTTCGTA TGAAACCAATGAGTTGGATTCGGTAGGGTTGACGATAAAACATTTACCGCTCCATTATCCTCCCTTCATTTTATACTACA TCAAACACAGTCATATTATTGAAATCGAATAGAATGCAAAACAGACAAAATGGGAATCATAACATCCATACACTATAGTT GCCTGAAAATTTGCGCATAGCAGACTTTACATCATAAAGTGCACCAAGTTCCTACATTGAATCTTTAGATCCAAGAGTCA ATGACACTAAGCTGTAATCCTTGACCTACCCTTGGCTATTCTACGAGCAATTACTCTTCTGCCACCCTTGGTTGCCTTCC TGCTCAAGCAAAAGAAAAATTGTGTCATCTACAAGATAACTGATGTCAATTTTAAACATTCACCCAATGATAAGGGTCAG TGATAATTTTAAACCAAAAACATACCCCAGTAAGAAAAGCATGCACTAAATATGCCACTTTGCCTGATCATAAGCTAAAC TTCAACACCCATTTATCTAGCTTTTTTTTCTTAATTCTAAGAAGAATCTGGATTGTGCTATAAGCTCACATTATCAACTT ACAGAGACTGGCAACATAAGGCAAAACAATATTCAATGTGCTGTCACAGTCCAAGATACAACGATCTGTATACAATTTAC TCTTTATTCAATTGAAAGTGTTTCAGTATACTTAACAATTTCCTAGTCATCTATTCATCTATGCTAATAGGCCCATGGAT CTAAGCAGCAGAAGCTATAATGAAATCATATTATGTGTCAAAATTAATTGACCATCTAATTCCTTCAAATCCCCCTGTAT TGACATTGAGTATCCAGAAGCACAGTGGCATTCTCCACAAGAATTTAAAATTTAGTAACATTGACTGATGGACAATGTAG AACACAAAGAAGGGTTTACTTGTCATCTTTTCTTATAAGGTAAATTATACTCCCCTCCTTTAAGAAAAGTTTAAATCATA CTTACCTCTTTTTTTATTTTGAAACATAAACTCCCTTTCTCCAAGATATGAACATTTTTCAGTATAATCCATTTTAACAT AAACAAACTTCTTACTGGTGGTGAATGATTCTTCTGATGAAAATTCTACTTTTCTTAACAACTTTCCATATCAATAGCAA CTAATTTTGAACATTTTGTTAATATTTATAGAATTCTAAATTTCCAAAATATGTATTTCATCTTCTAACGCCTCAACTCT CAACTGATAATAGAGGTTCAAAACTATAAATTTATGATGATGAAAATCACAAATAGACATAATTATAAAAATGGCCATAA GAAGCTTGTCTAGTGTCTACATTAAATAGATTAAACTATTCGTATTCATCTCTAAGGAGAGCATAGTGTAATTTTCAAAA TAAGAACAGGACAATGTAATTTAAACTTCGCTGAAGGGAGGTAAATACAATTTACTTTTTTATACTTAATATATAAATAG AGACATCTAGACAAAAAGATGAGATTTTTACCGAGCAAAAAATCCATGAACCCGCTTTCGTCGGAGAGTGCTGGGTTGAT AGCTCCTTTTGGGGAATAAAAGCATAGGGTCTTCTTCATTGGAAGGACACTCTGCAGAACAAGAACTATACTAATTAAAA TTCTAGAGGGATGTCTCAAGTTTTCATAAAAACATGGTCTCGTGTTTAAGCTAGTACGGGAAATATACTTTGTAATAGAA ATGAAAGGTACAAAAAATCACATAACAATTTCAGTTCACCATAAACATGAATTGCATCCTTGTGGTCCTCTCCTATTTCC TTCAGTAAAACACCTATCAATCTATCTAACTCTTTATATAATAAGTGTATCAGGTGAGAAAATGCTCTCATGAAAGAGAA TAATCCTGATCACACAATATAAATGGATAGACAGAATTGGATTTAAGTAAAACAGTGTGTGATTGTGTGGTTATGATTAG CATTTCGCCTCCTCACACTCTTCACTTGATACGTCTCCATATATGATGTGTGTGTGTGTGCGCGCGCGTGCACACTCAGT AGCATCCTACCTCACTATTGAGGTTCCTTCCACAAAACCTTACTATAATATCTTATTAGATTGTTTTTCATACATATATC CTACATGTACATAACAAAGTAGGAAGCCACACTATAAGCAGCTAACAATCCAGCATTTAATCAATAAAACATACAGATAA AAAAATGCATTCAAAATGAAACCAAATCCTACTTTTCCTTCATTTTCTGGATAAAAAAAAGGTTATGGTTAGTATGATTT CTATGCAAGAACTTCAATTCACATTTAAACCTAAAGCCAAAATATTCATCAGTGTTATAAAATATCCGCCATCGCACCAC CACGGCGGTTTCTCATGGCCGATATCCCGCCATTTTTAGCTTTCGACCATGACTCGCCATCCGCAATTAACAACATTGAT ATTCATCAAGAGCAAGCATAATCAAGATTCACACAAAAAAATCCATATAAACTGGACATTGAAAAATCATCAACCCAGCA TTTGTTACTGGTGGTGAATTGAATTCCAAAATGCAATTATACACCACCCATGAAGTGAAATTAAATTTATGATTCAAATA AAAGTATGTATATATATACCATAGGATACATCGACTGTGGCTTGAGGTAGGAAGAAGCTGAGATCAGGGAGGCCACACGG GTAGAGGAACCCTTGGGAGGCGAGAAGCTTGCTGGGTGAATCGGCGTCGTTTTGGGGGAAACTGGGGAGCTTAGAGAGGG GTGGGATTTGGAATAGCTGAGGAAGAGGGTGATTGGGATGCAAATTTGGGTTGAGAAGCGATTTTGAATTTGAAAAGCGA TTCAGCAATGTAGATCCACTTCTCAGAAGCGTCTTGGACGCCATTGTTTGTTTGGTTACTCAAGCTTTTCCAAAACCCTA GTTGGTGAGTGTGCGAAGAACAGGGAAGCTGGATCGGGTTTTGTTTGGCAGATGAGATTCCAACAATATGTATAGAAAAA ACCCAATTTACTGAATCAAATAAAAAG
CDS sequence (LotjaGi5g1v0215200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCACAATGTGCAATCAAGAAGGATGTCACTGAATTAATTGGGAATACCCCAATGGTATATCTGAAGAACATAGT TGAAGGGTGCGTGGCCCGTATCGCTGTTAAGCTCGAATACATGCAAGCCTGTGGTAGTGTCAAAGATAGGATAGCATTGA GCATGATTGAAGATGCTGAGAATAAAGGCCTCATTACGCGTGGGAAGACTATTCTTGTTGAGCCTACAAGTGGTAACACC GGCATAGGGTTGGCATTCATAGCAGCATTGAGGGGCTATAAAGTTATTGTGGTTATGCCATCTTATGTGAGTCTTGAGAG AAAAATTATACTGAGAGCCTTTGGAGCTGAGGTATATCTCACAGACCCTGCCAAAGGAGTTGACGGCGTTTTTCAGAAGG CAGAAGAGATAGTAGCTGAGACGCCCGGTAGTTATATGCTCCAGCAATTTGAAAATCCTGCGAACCCCAAGATTCATTAT GAGACCACTGGCCCTGAGATATGGAGAGATTCTGGAGGGAAAATCGATGTTTTCGTGGCAGGGATAGGAACTGGAGGAAC AATAACAGGTGCTGGGACTTTCCTCAAGGAGAGAAACCCAGAGATCAAGGTATATGGTGTAGAACCTGCTGAAAGTGCAG TTTTGAATGGAGGAAAGCCAGGCAAGCACCTAATCCAAGGGATTGGTGCTGGTGTCATTCCCCCAATTTTGGATGTTAAT CTCATAGATGAAGTTATTCAGGTTTCAAGTGAAGAAGCTATAGAAACTGCTAAGATGCTAGCCTTGAAAGAAGGTTTACT GATGGGAATTTCATCAGGAGCTGCAGCAGCAGCAGCAATAAAATTGGGGAAGAGACCAGAAAATGCAGGAAAGCTAATTG TTGCAATTTTTCCCAGTTTTGGAGAGCGTTACTTATCTTCCCCACTGTTTGAATCCATTAGGCATGAAGCTGAACAAATG ACATTTGAATAA
Protein sequence (LotjaGi5g1v0215200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESQCAIKKDVTELIGNTPMVYLKNIVEGCVARIAVKLEYMQACGSVKDRIALSMIEDAENKGLITRGKTILVEPTSGNT GIGLAFIAALRGYKVIVVMPSYVSLERKIILRAFGAEVYLTDPAKGVDGVFQKAEEIVAETPGSYMLQQFENPANPKIHY ETTGPEIWRDSGGKIDVFVAGIGTGGTITGAGTFLKERNPEIKVYGVEPAESAVLNGGKPGKHLIQGIGAGVIPPILDVN LIDEVIQVSSEEAIETAKMLALKEGLLMGISSGAAAAAAIKLGKRPENAGKLIVAIFPSFGERYLSSPLFESIRHEAEQM TFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 321 | 321 | 6.8E-198 | – | |
| PANTHER | 1 | 321 | 321 | 6.8E-198 | – | |
| SUPERFAMILY | 7 | 312 | 306 | 1.31E-104 | ||
| Pfam | 12 | 298 | 287 | 5.7E-71 | ||
| TIGRFAM | 12 | 310 | 299 | 1.0E-131 | ||
| TIGRFAM | 12 | 310 | 299 | 9.4E-129 | ||
| Gene3D | 13 | 305 | 293 | 9.8E-125 | ||
| CDD | 16 | 306 | 291 | 2.45098E-144 | – | |
| ProSitePatterns | 37 | 55 | 19 | - | ||
| Gene3D | 49 | 151 | 103 | 9.8E-125 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cysteine synthase activity | Catalysis of the reaction: O3-acetyl-L-serine + hydrogen sulfide = L-cysteine + acetate. | ||
| Biological process | Cysteine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. |
Expression pattern of LotjaGi5g1v0215200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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