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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0216300 |
| Transcript ID | LotjaGi5g1v0216300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kinesin, putative; TAIR: AT5G27950.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8W0Y9|KN14U_ARATH Kinesin-like protein KIN-14U; TrEMBL-Plants: tr|A0A151U570|A0A151U570_CAJCA Kinesin-like protein KIFC3; Found in the gene: LotjaGi5g1v0216300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52208467..52210630) extracted from Lotus japonicus Gifu genome v1.2.
CTCAACATCCAAATAGATCCAAAAGGATTGGTTGAAATTGAGGGTCTCTCAGAAGTGCAAATCTCTGATTATGCTAAAGC CAGATGGTTGTACAACAAGGGCAGAAGGTTCAGATCCACCTCATGGACTAATGTCAATGAGGCATCAAGCAGGTCACACT GGTGGGTTATAGGTCTAATTACATTGTCTAAGCTAATTTCATGGGTTTCTTAGCTTGATAGTTACATTATCTATTTAGCT TCATATATCTAGCTTGACAAGGATAAGCATATTTAGACGCGGGGATGCTTCAGAAGCCAAAAGCGAAATAAGTAAATTGT GGATGGTTGATCTTGGAGGCAATGAACGGTTACTGAAAACTGGAGCCAGAGGAGTAACACTTGATGAGGGCCGGGCTATC AATCTTTCTCTTTCAGCTTTAGCTGATGTCATTGCAGCTTTGAAGAGGAAGAGGGGTCATGTGCCTTACAGGCAAGTATT CTTATGGTGTTAATTTATCAAGTTTAATTGTGTCCTTTTAGTCTATGTTTGGATATTTGTTGGCACGCAAACAGATTTTA GCACTCACTTTGGGGTAAAAAGTGAACAGAACTTTTTTTATGGATCGAAGTGAACGTTTCGTTCACATTGCACTGAACTG ATATCCAAACACACACTTAGCCTTTAGTTGTGATATGTGCTTTGATAAGCTTATAACTACAGAGATGAGTCTTTTTTACT GCTGCAGGTTTTTATGCCATCCCAATTATTGTTTCTTTCTAGACAATCAAAGTATCAAATAGTGACGATTTAATGCTTAC TTTGTTTGCAGAAATAGCAAGCTGACACAAATACTGAGAGATTCTCTTGGTATGATACTTCTCTCTTCTCCTAATTGCAA ATTCATTTGTATTGGAATATTTTTCACTTATTGATATTTGACTTATTGAGAGTAGAGGAAGAACAGTGAGCCATTTGTCA ATATCTGCATGAAATGTGCATGTACCAATGTGATATGCATAGTTCAAGATTTATGTTCAGACTTTTTTTGTTTTCTAAAA TATAAAATGCCTAATCTTTATAATCAAATACTTAAGGTGATGGCTCAAAGGTCTTGATGCTTGTGCATATAAGCCCTTCA GAAGAAGATGTTTGCGAGACAATCTGTGCTTTGAATTTTGCAAAGAGGGCAAGAGCAGTAGAGTCCAATAAAGAAGTACA AGTGGTAAACTTACTTAAATTTATCTTAAACCAAAGTTCCTCAGTGGGAACTGCTTGAAGATTGCTAACTGCATGCATGT ATTGTAGGAATTGAAGAAGCAAAAGGAAAAGAAGATTATGGAGCTTGAGGAAGATATTAAGGAAGCTGAAAAGCAACGTC AGTATTTAAGGGATCAAATACAGAATGTTGAGTTAAAGCTAAAAGAGAGTAAAAAGATATTTTCAACCACATATACTCTT CCAGAAAGGGAAGACATGGAAACCTCTATTAGCCCCAAAGATGATGTCAAAGAGGTTAATGAAACCCCTAAAGCATCTCA TAAGTGTATTAAAAGAAGTTTCTCCAATTCAGTGCCTCGGTTCATGAATTCAACTGCTGCTAGTCGCCAAAGGCAAAGTG CTGCAGAACAGGAACTTATTGTGAAATCAAAAGGTTTAAGATCTGTGGTCGCTAGAAGTTCAATCCAGTTTCCATGTTCC CAATCATTAAGTTACTCAGATCTCCGCGTTAAAGCAATGCTGCGAAGTTCTCATGGAAAATCCCGGTATGCTGAAACAAA TACTATTCCCACAGAAAGGCCTAAATGCAATGAGTTGGATTCGAAAGTGGTTACTCCTCGAAGCAAGATGGTTACATCAT CTGATCCAAACTTGAGAGTTACATTGTGTCATCATAGAAGAAGGATGTCTAATCTGATCTAAGGGTTAAGTGACATCTTA GTTGCAGAATGCAGATACTTTAATGTTGTGGAGTGGTTGCATGTTTACCTTCTTTCAGTTTGTATTTTCTTTAACAAATT GTAGCGAGAGTGTGGTGTTAATAGGTGTGTTTTCTGGGGCTGTTAGTGTTTGGGATCTGTTAACTGTTTAACATGGTCAT TCTCAGTTTTTGAGCTTGTTGGGTCTTGTTAGTCATTTGATTATGAGATTATATAGCAATTTGAGGTGACTAACTATTAC TGAA
CDS sequence (LotjaGi5g1v0216300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGATCTTGGAGGCAATGAACGGTTACTGAAAACTGGAGCCAGAGGAGTAACACTTGATGAGGGCCGGGCTATCAA TCTTTCTCTTTCAGCTTTAGCTGATGTCATTGCAGCTTTGAAGAGGAAGAGGGGTCATGTGCCTTACAGAAATAGCAAGC TGACACAAATACTGAGAGATTCTCTTGGTGATGGCTCAAAGGTCTTGATGCTTGTGCATATAAGCCCTTCAGAAGAAGAT GTTTGCGAGACAATCTGTGCTTTGAATTTTGCAAAGAGGGCAAGAGCAGTAGAGTCCAATAAAGAAGTACAAGTGGAATT GAAGAAGCAAAAGGAAAAGAAGATTATGGAGCTTGAGGAAGATATTAAGGAAGCTGAAAAGCAACGTCAGTATTTAAGGG ATCAAATACAGAATGTTGAGTTAAAGCTAAAAGAGAGTAAAAAGATATTTTCAACCACATATACTCTTCCAGAAAGGGAA GACATGGAAACCTCTATTAGCCCCAAAGATGATGTCAAAGAGGTTAATGAAACCCCTAAAGCATCTCATAAGTGTATTAA AAGAAGTTTCTCCAATTCAGTGCCTCGGTTCATGAATTCAACTGCTGCTAGTCGCCAAAGGCAAAGTGCTGCAGAACAGG AACTTATTGTGAAATCAAAAGGTTTAAGATCTGTGGTCGCTAGAAGTTCAATCCAGTTTCCATGTTCCCAATCATTAAGT TACTCAGATCTCCGCGTTAAAGCAATGCTGCGAAGTTCTCATGGAAAATCCCGGTATGCTGAAACAAATACTATTCCCAC AGAAAGGCCTAAATGCAATGAGTTGGATTCGAAAGTGGTTACTCCTCGAAGCAAGATGGTTACATCATCTGATCCAAACT TGAGAGTTACATTGTGTCATCATAGAAGAAGGATGTCTAATCTGATCTAA
Protein sequence (LotjaGi5g1v0216300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDLGGNERLLKTGARGVTLDEGRAINLSLSALADVIAALKRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHISPSEED VCETICALNFAKRARAVESNKEVQVELKKQKEKKIMELEEDIKEAEKQRQYLRDQIQNVELKLKESKKIFSTTYTLPERE DMETSISPKDDVKEVNETPKASHKCIKRSFSNSVPRFMNSTAASRQRQSAAEQELIVKSKGLRSVVARSSIQFPCSQSLS YSDLRVKAMLRSSHGKSRYAETNTIPTERPKCNELDSKVVTPRSKMVTSSDPNLRVTLCHHRRRMSNLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 306 | 306 | 1.3E-89 | – | |
| Pfam | 1 | 97 | 97 | 2.0E-32 | ||
| ProSiteProfiles | 1 | 97 | 97 | 41.164 | ||
| SMART | 1 | 105 | 105 | 1.4E-5 | ||
| SUPERFAMILY | 1 | 137 | 137 | 5.21E-37 | ||
| PANTHER | 1 | 306 | 306 | 1.3E-89 | ||
| Gene3D | 1 | 142 | 142 | 1.3E-39 | ||
| Coils | 93 | 142 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Microtubule motor activity | Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Microtubule-based movement | A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules. | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. |
Expression pattern of LotjaGi5g1v0216300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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