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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0217000 |
| Transcript ID | LotjaGi5g1v0217000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane adipocyte-associated 1; TAIR: AT3G05010.1 Protein of unknown function, transmembrane-40; Swiss-Prot: sp|Q4V8X0|TPRA1_DANRE Transmembrane protein adipocyte-associated 1 homolog; TrEMBL-Plants: tr|I3SZ53|I3SZ53_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi5g1v0217000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52318116..52319869) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTCAACAATCGGTGCTAGCAATAACAAAGCAAGAGGGCTCAGATTCTTCTTCTTCAAGCGCAGCGTTATCCGCGGG AATGTTCGACTGGGTGTTCAAGTGCCATGGGTTCTGGCACAATGCGGTGTTGATCATCGCCTCTTTCCTCTTCGTCTTGT ACTTGGCATTGCAAGCGAAGCAGAGCTTCCGCAAGCTCTCTCATGGTCGCTCGCATATTATAATCTCGTATTACGCCACC CTCTGGCTTGTCAGCATCCTCAATCTTGCTTGGTGTTCTTTTCAGGTTACCCTATTTTCTCAACAATTTTTCTAATCAAG GGGAAAATTTATTTTTTATTTACATATTTTGTTTAATTTAGGTAATATTTGATTTTGTTTTCTGTTTAAGATAAGAAAAG TGATACATTTTGGTTTTACTTAGAAGGGGGTGTCAACAGGGAACAGAACAAATTAGTCTGTATGGTTCTGTTTTGTTGGC AAGGTTTTAATTGCGGTCGCGGTAATGGTCGCCTCGCGGTTGCGTTATAGTCATTCATATTGCGGAAAATTGCGATTCGC TGTTGCGGCTGAAATCACGGAAACCTCCAAAACCTTGACGTTGCGGTCGAACTCACGGATATGGACCTTGATTTAAAACC ATGTTTGTTGGCATGCCAAGAGCTTACTTATATTGTTGTTTAATGCTATTATTTTCTGATATGCCGCTGTTGGTGAATGG TGATGCAATGATGTATATTTGAGAGGTGAAATTGGCTTCAATTGTTTGGTTGGTTGAAACAGGTATGGGAGTGCTCTCCT GGGAAAGAGCTTGCATGGAACTTGTTATCCTTGTTTACTTCATCTGGAATGCTGTTTCTAGAAGTGAGCTTGCTGGCTTT TTTACTTCAAGGGAATAATGCTAGTGGCTTAGAAGCGTTGACCCGGACTTTTGGTATATCAGGGGTCATTGTTGGTTTTG ACATCTTGTTAAAGGTAATGCAATGCTTTGGTTTTGATTTGAAACATGTTGTCCTTGTGGTTACTGGTTGTGGATGAATT TTTGCACCTTTTCCTTGTTAGGGTATATATCTTTTTGCATTTGGGATCCCGTTATTCATCGACACCGATCACAGTATTCC TCACGTGAAGTGGAACTTGTGGGTTGTTCACAAGCTGGTGCTCACCCTTGTTTATGGATTAATATTGTTCATGTATCATT CTAGGTGGAGAGAAAGGTTACCTGGTAAGTTAATTGTCTGGATTTGGTATATTATGCTTTTTATTAGTGACATGATAACA TAATTTCTCTTCCTTTTGCAGCAAGACCTGCGTTCTACAAGTATGTTACTGTTATGTTCATCTTGAATGCAATTGCACTT TTTGCTTGTGGTCTAACTGGAAGTGGAGCTGCTTTTGGTTTCTGGTTAGATTCTTCCATAGCTTAGCAGAAAAGTACTTC TTTTGAGCCTTTTTCTTTGGCATCTTTCTCTAAACCCCTGTGTTTACTTTTGTTTACAGGTTCTATCGCGTCACAGTTGT ATGTTACCACGCCTTTTATCTTCCTCTGCTGTATATAACATTTCTAGCAGACTTTTTCCAGGTCATATACCCTTCACTTG TTTGTAGAAGTAAGGATGTTAGAATCCTTACTATTCTTATATATCTGGCTGACTGTTCTTATTGTTTTGATAACAGGAGG AGGACTTGAACTTGGAGAATGTGTATTACTCTGAAATGAAAGATGCTGGTTTCTTCGAATCAGATTGGAACTAA
CDS sequence (LotjaGi5g1v0217000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCAACAATCGGTGCTAGCAATAACAAAGCAAGAGGGCTCAGATTCTTCTTCTTCAAGCGCAGCGTTATCCGCGGG AATGTTCGACTGGGTGTTCAAGTGCCATGGGTTCTGGCACAATGCGGTGTTGATCATCGCCTCTTTCCTCTTCGTCTTGT ACTTGGCATTGCAAGCGAAGCAGAGCTTCCGCAAGCTCTCTCATGGTCGCTCGCATATTATAATCTCGTATTACGCCACC CTCTGGCTTGTCAGCATCCTCAATCTTGCTTGGTGTTCTTTTCAGGTATGGGAGTGCTCTCCTGGGAAAGAGCTTGCATG GAACTTGTTATCCTTGTTTACTTCATCTGGAATGCTGTTTCTAGAAGTGAGCTTGCTGGCTTTTTTACTTCAAGGGAATA ATGCTAGTGGCTTAGAAGCGTTGACCCGGACTTTTGGTATATCAGGGGTCATTGTTGGTTTTGACATCTTGTTAAAGGGT ATATATCTTTTTGCATTTGGGATCCCGTTATTCATCGACACCGATCACAGTATTCCTCACGTGAAGTGGAACTTGTGGGT TGTTCACAAGCTGGTGCTCACCCTTGTTTATGGATTAATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCTG CAAGACCTGCGTTCTACAAGTATGTTACTGTTATGTTCATCTTGAATGCAATTGCACTTTTTGCTTGTGGTCTAACTGGA AGTGGAGCTGCTTTTGGTTTCTGGTTCTATCGCGTCACAGTTGTATGTTACCACGCCTTTTATCTTCCTCTGCTGTATAT AACATTTCTAGCAGACTTTTTCCAGGTCATGAGGAGGACTTGA
Protein sequence (LotjaGi5g1v0217000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQQSVLAITKQEGSDSSSSSAALSAGMFDWVFKCHGFWHNAVLIIASFLFVLYLALQAKQSFRKLSHGRSHIIISYYAT LWLVSILNLAWCSFQVWECSPGKELAWNLLSLFTSSGMLFLEVSLLAFLLQGNNASGLEALTRTFGISGVIVGFDILLKG IYLFAFGIPLFIDTDHSIPHVKWNLWVVHKLVLTLVYGLILFMYHSRWRERLPARPAFYKYVTVMFILNAIALFACGLTG SGAAFGFWFYRVTVVCYHAFYLPLLYITFLADFFQVMRRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 37 | 37 | - | – | |
| PANTHER | 16 | 275 | 260 | 2.0E-116 | ||
| PANTHER | 16 | 275 | 260 | 2.0E-116 | – | |
| Pfam | 34 | 275 | 242 | 2.4E-103 | ||
| TMHMM | 37 | 59 | 23 | - | – | |
| Phobius | 38 | 57 | 20 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 77 | 97 | 21 | - | – | |
| Phobius | 98 | 108 | 11 | - | – | |
| Phobius | 109 | 130 | 22 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 131 | 149 | 19 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 150 | 172 | 23 | - | – | |
| Phobius | 173 | 183 | 11 | - | – | |
| Phobius | 184 | 204 | 21 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 205 | 223 | 19 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 224 | 249 | 26 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 250 | 254 | 5 | - | – | |
| Phobius | 255 | 274 | 20 | - | – | |
| Phobius | 275 | 280 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0217000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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