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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0219800 |
| Transcript ID | LotjaGi5g1v0219800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HSP20-like chaperones superfamily protein, putative; TAIR: AT1G54850.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|Q84K79|IDM2L_ARATH Alpha-crystallin domain-containing protein 22.3; TrEMBL-Plants: tr|I1LBD7|I1LBD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52627332..52629850) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATTTCAGTCCCCTTCACTTGCCTATTTCTCCTTCTTCTTCGTTTCGAGTTGAGACTGCAACAAAACCCTTGAGAAA CCCTTCAAACTCTGCAGTCAGCAGCACACACACGCACCCTTCTGGAACGCTGCTCCTTCCTTCTCATCTCGAATCAATAC GCACCGTTTCAGCACGCACGAACTGGTTCGTACTTCGTTGGAGGATTCAGCACCGAATTTGGTAACTGCATTGCATGTCT ATAATCCATTCTTAGCACAATGGATCAGGGTAACAACAACAACCTAGAAACCCAGATACCCAATAATGATGATCAGTGTT TTCTGTTATTCTTCATCATGGGCACTTACTTTGGTCCTGACATCAAAGGGCAAACCACCAAGAAATCAGTGTTGCAAAGA GTAGCTGAGGGGCTACCTTCATACACATTGGATCAACTCACCAATTCTGTCATGAAAGTTGTGGAATTAGAGCATATTTA TTATTATATACTTAGGAATGCTGATAAGAAACTCACATTGAACTTACCCTTTTTGCGCCGAACCTTTGAAGGCGTAGATC GCGCTGAAAATTGCAATTATCCCCAGTTTTCTGATATGTTCCCACCTGATTTGCATCCCATATGTCGGTTTAAAAATCGA CATAAAGTTGTTAACAGCATTGTGTTTGTTAACAACCCTGAAGTTTTGTGCCATAAGCTAGAGGATGTTGAAAGGTTCAA GAGGCTGAGTGGGGTGAGTGATTTCCATGTGGACAGTGAAGCTGCAAGGCTGCACCTGCCTACTTGTTTTGATGGCGGTG TTTTGCGTAACATGCCGGAGGTTAACGAGAACGAGCCATTGCCTACCTCTTGTACCGGCACTGGTTCTCAGAAGCCAAAA AGTGATGATTTTTCGGAGCTTCAGGATCATAGCCATAGGCAACATGCCCATGCTGCGGCACCAGAGGATGTTGAAAGGTT GCACACTTGTTTTGATGGAAGTGTTTTGTGTAACATGCCCGTGGAGAAGGCTGAGCCTAATGAAAACGAACCATTGCCTG CATTTCAGTCTTGTACCAGCACTGGTTCTCAGAAGCCAAAAAGTGATGATTTTGCTGAGCTTCAGGATCATAGCCTTAGG CCACATGCCCATGGTGCGGCACCTATCAAGAGTGTGCCTTGTGATGATGCGAATGTGATGTGCGGTTACACGGTGCCTGG CGATGAGAATGATCCTGATAAAGTCGGTCCGGCCATGTTGTTCCTTCCTTCTCGCCCTACTGAGAACGAATGGTCTGACA TTGTGGCTGCTACCAAGAATGGATTTGGATTGACCGGAAGTGCGGCTATGGGGCGGGCAGGACCAATCATAGGACTTGTG GACATTGGAGAGTGTGAAGATTCATACCTATTTCGCATGTCTCTCCCGGGAGTGAAGAGGGATGAAAGTAAGTTTCTTGT TTAGTCATATCTCACATAATTGCTATTCATTTAGTTCTTTGCTTCTATGCTATTAGCCCCTACATATTAGGAATGTATAT TCCATGTTTATGTTGCAAGTTTCTGCTTAAAGATTTTGATTGATTAAATAGCAGCTGAAAAGGAATATATATTGCATGTA TATGGTATGATCCAGAGGTTGTAGCACTTGAAATGAGAACTATGTTAATTACATCTTTGTACTTGTGTCCACGCCTAAAG AAAAGATTGACAAATAGAAAGGAGAAAGAAGAAGAAAGAGACGTCTTATTATACTTATTGTTTGTCATTTGGTGTTCTGG TAATGAGCAATGTATCTAACTGTGGTAATCAATGCTTATGTATGGTAAGATTGGGCATTAAAAATGTATTATTAATGGCT CATCCGGCCGATTTCAGGAGGCTGGCAAAAGAAAACATTAATAATTTATGTCGCATATGCCTCAGAAATCTCACTACACA TAACTAATATATGCCTTGAATTCTGACTACAGGGGAATTCAGCTGTGAGGTTGACACCGATGGTAAGGTACTGATAAGTG GAGCAACTACAACAGGAGAGAAGACGGTATCCAGGTACTCTCAGGTGTTTGATATGCAAACTCAAAACCTTTGCCCACCG GGCCCTTTTTCCATCACATTTCAGCTCCCCGGCCCTGTTGATCCGCATCAATTTTCGGGTAATTTTGGCACTGATGGAAT TCTTGAAGGAATTGTTATGAAAAGGAAACCTACATGATAGCGAAGCTTTGTCTGATTAGAATCCTTGCTTTCATACCACC AAGCAGCAACAAAGGTTAATATATGTTAATGCAAAATGTCATCAATAGATGAGGTTTTGAGTGACCATGTCGGCATGTCC TGTATAGTGTTTATCCTTAGTTTATTATTTTGTGTTTATGATGTACATGCTTAGATGGTCACTGACATTTTGTGCCTGTA CAATTGCCTGTTATATGGTTAATTAAGCCATTTTGTTGGATATATCCTCCACTGATGAGTATATTAAATTCTCTTGAGAC AAGAAATTTAAAGTCTTTAGTATGATAGATAGTGATTCA
CDS sequence (LotjaGi5g1v0219800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAGGGTAACAACAACAACCTAGAAACCCAGATACCCAATAATGATGATCAGTGTTTTCTGTTATTCTTCATCAT GGGCACTTACTTTGGTCCTGACATCAAAGGGCAAACCACCAAGAAATCAGTGTTGCAAAGAGTAGCTGAGGGGCTACCTT CATACACATTGGATCAACTCACCAATTCTGTCATGAAAGTTGTGGAATTAGAGCATATTTATTATTATATACTTAGGAAT GCTGATAAGAAACTCACATTGAACTTACCCTTTTTGCGCCGAACCTTTGAAGGCGTAGATCGCGCTGAAAATTGCAATTA TCCCCAGTTTTCTGATATGTTCCCACCTGATTTGCATCCCATATGTCGGTTTAAAAATCGACATAAAGTTGTTAACAGCA TTGTGTTTGTTAACAACCCTGAAGTTTTGTGCCATAAGCTAGAGGATGTTGAAAGGTTCAAGAGGCTGAGTGGGGTGAGT GATTTCCATGTGGACAGTGAAGCTGCAAGGCTGCACCTGCCTACTTGTTTTGATGGCGGTGTTTTGCGTAACATGCCGGA GGTTAACGAGAACGAGCCATTGCCTACCTCTTGTACCGGCACTGGTTCTCAGAAGCCAAAAAGTGATGATTTTTCGGAGC TTCAGGATCATAGCCATAGGCAACATGCCCATGCTGCGGCACCAGAGGATGTTGAAAGGTTGCACACTTGTTTTGATGGA AGTGTTTTGTGTAACATGCCCGTGGAGAAGGCTGAGCCTAATGAAAACGAACCATTGCCTGCATTTCAGTCTTGTACCAG CACTGGTTCTCAGAAGCCAAAAAGTGATGATTTTGCTGAGCTTCAGGATCATAGCCTTAGGCCACATGCCCATGGTGCGG CACCTATCAAGAGTGTGCCTTGTGATGATGCGAATGTGATGTGCGGTTACACGGTGCCTGGCGATGAGAATGATCCTGAT AAAGTCGGTCCGGCCATGTTGTTCCTTCCTTCTCGCCCTACTGAGAACGAATGGTCTGACATTGTGGCTGCTACCAAGAA TGGATTTGGATTGACCGGAAGTGCGGCTATGGGGCGGGCAGGACCAATCATAGGACTTGTGGACATTGGAGAGTGTGAAG ATTCATACCTATTTCGCATGTCTCTCCCGGGAGTGAAGAGGGATGAAAGGGAATTCAGCTGTGAGGTTGACACCGATGGT AAGGTACTGATAAGTGGAGCAACTACAACAGGAGAGAAGACGGTATCCAGGTACTCTCAGGTGTTTGATATGCAAACTCA AAACCTTTGCCCACCGGGCCCTTTTTCCATCACATTTCAGCTCCCCGGCCCTGTTGATCCGCATCAATTTTCGGGTAATT TTGGCACTGATGGAATTCTTGAAGGAATTGTTATGAAAAGGAAACCTACATGA
Protein sequence (LotjaGi5g1v0219800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQGNNNNLETQIPNNDDQCFLLFFIMGTYFGPDIKGQTTKKSVLQRVAEGLPSYTLDQLTNSVMKVVELEHIYYYILRN ADKKLTLNLPFLRRTFEGVDRAENCNYPQFSDMFPPDLHPICRFKNRHKVVNSIVFVNNPEVLCHKLEDVERFKRLSGVS DFHVDSEAARLHLPTCFDGGVLRNMPEVNENEPLPTSCTGTGSQKPKSDDFSELQDHSHRQHAHAAAPEDVERLHTCFDG SVLCNMPVEKAEPNENEPLPAFQSCTSTGSQKPKSDDFAELQDHSLRPHAHGAAPIKSVPCDDANVMCGYTVPGDENDPD KVGPAMLFLPSRPTENEWSDIVAATKNGFGLTGSAAMGRAGPIIGLVDIGECEDSYLFRMSLPGVKRDEREFSCEVDTDG KVLISGATTTGEKTVSRYSQVFDMQTQNLCPPGPFSITFQLPGPVDPHQFSGNFGTDGILEGIVMKRKPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 209 | 209 | 6.6E-167 | ||
| PANTHER | 1 | 209 | 209 | 6.6E-167 | – | |
| MobiDBLite | 187 | 229 | 43 | - | – | |
| MobiDBLite | 190 | 208 | 19 | - | – | |
| MobiDBLite | 209 | 229 | 21 | - | – | |
| PANTHER | 229 | 468 | 240 | 6.6E-167 | ||
| PANTHER | 229 | 468 | 240 | 6.6E-167 | – | |
| MobiDBLite | 251 | 280 | 30 | - | – | |
| MobiDBLite | 259 | 275 | 17 | - | – | |
| Gene3D | 334 | 470 | 137 | 1.1E-12 | ||
| ProSiteProfiles | 354 | 470 | 117 | 11.885 | ||
| SUPERFAMILY | 355 | 465 | 111 | 3.84E-6 | ||
| CDD | 368 | 467 | 100 | 4.51112E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0219800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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