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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0219900 |
| Transcript ID | LotjaGi5g1v0219900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G10250.2 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1; TrEMBL-Plants: tr|K7N580|K7N580_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52631748..52636825) extracted from Lotus japonicus Gifu genome v1.2.
ATCAATTTCAAGCATAACTCAGTACAGTACTAATAGACAGTATATTCTCATTCATTCTCATACTATTCAAGAATTGTTGA ACCAAAGAACAGAGTGACAAATCAAAAAATTCATGCTCTCAAGTCTCATCTAGACATTCTTCCATTTCTATTTCGATTTC GATTTGTGATGGCAAATTGGGTAGCTGGAGAACCAGTCATAAGCTTCTTCACCCAAAATTTCACATCCTCTTTACCAAAC CCAGAACCTATCACCAAAACAATCCCAAACAAAAACCCTAAAAACCATTCCTTAATAGCTTTCTTTCGAATCAGAAAAAC CCCAACAACACAAAACAACGACGCTTTCAGAAACAGGTCCATCTCTGAAACCCTCCACGACCACCAACCCGCAACGCAGA CCAACGCGAACCATGCTAACTGCTTCTTCCCCCTTTTCCTCCTAGTCTGTTTCCCTCTCCAGCCACCAACGAGGCTGTGA AAACCGTTGAAATCGCCGCGCGCGATTTCGCCGGCGAGCGAGTTGAGGGGCTCCGGCAAGATCTTGAGGTTGAATGCGAC GGTGGAAACCAGTTGAAGCATCTTTTGGTTTGATCGTTGGGACCACCCACGCGGCCTCCTGGCGCACACGATGGTTGGGT GCTGCCGCGAAATGCGAAGCGAGGTGGGTTCGGAAATCGAAAGAAGGAAGTGGGTTCTGCAAGTGTAGGGTTTCAGTGTC GCCATTGTCATGTGGTGGGTGGTGAGTGGTGACCGTTGGCTTGGTAAGAATGGGAGAATAGGTACTTGTTCAAACTTCAA ATTCTCTGTTCTATGTAGGAAAATCTGGCTGCACTTGTTTTGAATTTCTTTGGGTGTATAAATGGAATTTATTTGATAAC CAGATAAATAGTGCTAAGAATTAATAACTCAATGGTTGGAGTAAAATTTATAAAAAAAATGCTTAAGAATTGCTTAAGAA CCTGTGGCACCACGAGCTTATAAGAATAGTGCTAAGAACAAAAAATTAAGAACCTAACATTGAAGATGTTATTTGTCTTA TACATTTTTATGAACAATTGGAAAGTTTCACAACTAAGAGAAAGAGCCGTCGAAACGACCGAAGCGAGGTCCATCGTGCA ACAAAACTGACACATTTACTGAAAATAATAGCAAAGTTATGCACGGGTAACCATCATCTCAAGAATCGCTTAGGAAGACT TCGTTAAGGTCTGATACCTTGATTACAACTCTCACCATACCTATACATACAAGTTTGAACGTTCATTCACGTATGCATTA CTCATTTTGCTAACCCATTGTTTTTCGAGGACTTTGAGCTCCTCTCTCTATGCTCAACTTCTGACTTGAGCGCGGAGTGC CTTTAAAGGCACCTCCCTCCACCGTAGTATCGTGATGGAAGATCCATCGAGGGGGACCGCACGACCGGAGACTGAGAGCC TCCTCTCATTATTCCGGAAGAACAATACTAAAGATTGTATGTGGTTTTTACTGAACACAAACGAAATGTAAGCTTATCAA GAAAAGAACATATTCTCTCAAACTCGTCTCAATTCTCCCATAAAACATAGATTTAATAAAATAGATCCCTTTCTCATGCT AGTTGCACAAACTCTAAATTAGTTCTGTATGCAAGACTAACTAAACAGACTGTTATTAATCAACATAAGAATTTGATCTG GATTCCTCGTCAAATTTCCAACTTAATGGCTTCCTTCCCTGCTTCCCACTTTGGAGGAAGACAAAACTTTATGCTTCTAA ACACCTATACCAGCCATAAACAATGTTGCTCTCTGCCGGTATTGGTCACACAATCACTAGAGCATTCCTCTTTAATGACA TTAAAATTAATGAAAGATGAGGTGCAAATTTTTATTGATGTGTCAAAATATAATTGAAGGGGAGAGGCTTTTCATCACAT GTTTTTTGGCTGAGTTTTCTCCATTTAATGCAATTGCTTTGTATTCTTCAGAAACCCAAAAGCCAGAATAATTTAGCCAT TTAACAAATGATGACAAAATAAAAGAATATAGGTTGTAGGAACAATTTTCTGGCCACAAAATTCATGAGGCTAGAATCAG CTCTGGTTAAGAGGAGTGGGACATGTTATTGCTTTGATACAGCATGGAAATACCTTCTTAATGATGAAGGCGACATAGAC AGAGAAGGGTGGTTCTGCGTTTCTCAATTAGTGGATGAGATTGTAATGCTGACTTAATGACATTCTTCTAGGGTCTTGCA TCCAATGATCTGTCTCCTCTCATATTCTCCATTAATTCCATTTGATAAAGTGTCAAGAGATGGTAAAAAGCAACAAACTC TCTTGAATGTTATAAACACTTTAATTATAAATAAATATATGTAAAGTGATCAAGTGGATGACATTACATTGATTACAATA CAATAAGGATAAACCATTGATTACTAATTAATCAAAAAGTGCATAGGACACTTTTTCTGTCTATAAATATGTCCTCCACA TTCCATACTCTTTACCAATTTCTTTCTGTATAATCTCGCTCAAGCTTGAAGAACAGGTTTCAGTTGCCAAGGCTTGATAA AGTGATCATGGGAAAGAAAAGTCTTGAATGTGAAATTCCCTTGGGTGGTATTAGTATAGTAGATGGGGTGAAGCGTAACC GGTGTGTGGTGCTACCAGCTAAAGTTCCTATAGTTGCTGATTCCTTAGAAAGGACAAAACAAAACTGGTAATTAAACACC TACCTCCCAAGAAAAAGCCAAAAACTATATATGAATATGATCATTGATTTCTTGCATCATAATTCTCTTCATGTGCTTCT CTTGTGCATAACACAATTTTTAGCCTATACTGGCTGTACTCTGCATCTGAAATATACTTTGTTCCATTTATTTGATGCAG GATTGCTAGGGCGAATTCCACTACTGATTTAATCATACAAGTTGGTGATTCCAGCTTCCACTTGCATAAGGTAAACAAAT TACTTCTTTAATTCTCAGGAAAAATGCTACTTTTTTTTTGTCTTTTCTAGTTCTTTTTTCATACTATTAAACCATTTTGT GGGATAGGTTAGGATGAGGTTTATTTATCCCTTATCAGACTATATGCTAAAAATGGACACATTTACTATTCTTGCAATTT TAACAGTATATGGTTTTGTTGATTAACAGCTTGCCATGGCCTCAAGAAGTGAATATTTGAATAGGCTCATCTTTGAGAGG GAAAGCAACAGAGGAAATGCAGGTGATAGCCTCAAAATCCAACTAAAAAATCTCCCAGGTGGTGCTAAAACCTTTGAACT AGTAGTGAAATTCTGCTATGGATGGAAATTTGACATGACTGCAACAAATATTGCCCCATTATACTGTGCTGCACATTTCT TGGAAATGAGTGAAGATCTTGTGGAAGGAAATCTCATTTTCAAAGCAGAACCTTTTCTAACCTTCCTCATATACTCTTCA TGGAAAGACACTTTTAGAATACTCAAAAAGTGTGAATCCATTTCCTCTTGGGCCAAGGAGCTGCAAATTGTGAAATGCTG CTCAGAATCAATAGCTTGGAAAGCATGCACGGAATCAAATGCTAAAACCACAGGACTTGATCCTTGGTGGTTTGAAGATG TTTCGGTTCTACGCATTGATCATTTCGTTGAAGTGATCCAATCTATCCAAAGGCGCGGAGTCAAACCACAGCTTGTAGGT TCTTGTATAGCAAATTGGGCAACAAAATGGTTTTCTCAATTCACTCTTGGAATTGATAAGGTGACACCTAAAGACATAAC ACTCCAGTTACGAAAAGTTTCAACTGAATGCTTGATTAAGATGCTTCCTGTTGAAGAAAACTCAGTCACTTGCAATTTTT TGCTACAACTGTTAAAGGCAGGGATGGTGTCCAAAATCAACCCTGCTTTGTTGTGTGTTGTAGAAAGAAGGGTAGCCTCA ATGTTGGAGCAATGTCGCGTCTTGGATCTCTTGGTTAAAAATCAAGGAGACCATGAATCCTTGTATGATGTTGCTGTTGT AGTTAGGGTGTTGCAATCTTATGTTTGCAGCATGTCGAGTAATCCTGCAGCGAAACTCCACAATGTTGGACGGTTGGTGG ATGGTTATCTTGCACAAGTTGCAAGGGATGAGAATCTCACAGTGGAAAGTTTCATTTCACTTGTTGAAGCATTGCCTCAA AATGCCAGATTCTGTGATGACAGCCTCTATAGAGCCATTGACATGTTCCTTAAGGTAATTACTATCTAGATATATTATAT CATTTTCTAAATCTCTAGCTCAAGATCTATGTGTGAAATGTGAATATTTGGTTCCACATTTGCAAATGTTAGAATTGATT TTCCATTGTCAGAAACAGTTATTTAGTGTTTAGATGTTTCCTTTCACAATTGATTCTAACTCCAAAATCAATTATGGAAT GAAATTACAAATACTAACCTCTGCAATGGATCAACTTCTCTTTCTTCAGAATCAATTCTAAAATCTAGAAACTTCTCAAC ATAATCATTTACATGATTTCATGATTGGATTTCAATTACAAGTCACTTTTCCTCACTCTTACCAAAATCAATTATATATC TGCAATCAATTCTGACATCAAAATACACATTTGATCAATTACTTCTTTTGTATTCATCTCTATATTTACATGGTTGAGCA CTAAGACTTCATCCAAATTTTGCAGGCACATTCCAATTTGACAGGAGAAGATCGATCAGGTGTGTGCAGGGTCCTGGAAT ACCATAGATTGTCGCAGGAAGCACGTCAGCATGTGATGCACAATGATAGGTTGCCCTTGAAATTAACAACAAAATTTGTC CTTCTAGAACAAGTGAACATGACAAGGTCAATGACTAATAATGGATCGAATTACCGAAGGACTAATACTCAGACAACAAT CAGAGTAAGCAAAGATTTTGAAAAGAGACAGATAAATGCACAGGAAATAAAGATGATGAGCAAAGATGTTGAAATGATGA AGTCACAACTCTTGGAACTAAATACCTGTAAAATAAAGCTCCAAATGCAACTGAAGAGATGCATTCGTTGAAAGAGAGTT TGTTATGTAAAAAGTAACACTTCAACATGAGGATTAAG
CDS sequence (LotjaGi5g1v0219900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAGAAAAGTCTTGAATGTGAAATTCCCTTGGGTGGTATTAGTATAGTAGATGGGGTGAAGCGTAACCGGTGTGT GGTGCTACCAGCTAAAGTTCCTATAGTTGCTGATTCCTTAGAAAGGACAAAACAAAACTGGATTGCTAGGGCGAATTCCA CTACTGATTTAATCATACAAGTTGGTGATTCCAGCTTCCACTTGCATAAGCTTGCCATGGCCTCAAGAAGTGAATATTTG AATAGGCTCATCTTTGAGAGGGAAAGCAACAGAGGAAATGCAGGTGATAGCCTCAAAATCCAACTAAAAAATCTCCCAGG TGGTGCTAAAACCTTTGAACTAGTAGTGAAATTCTGCTATGGATGGAAATTTGACATGACTGCAACAAATATTGCCCCAT TATACTGTGCTGCACATTTCTTGGAAATGAGTGAAGATCTTGTGGAAGGAAATCTCATTTTCAAAGCAGAACCTTTTCTA ACCTTCCTCATATACTCTTCATGGAAAGACACTTTTAGAATACTCAAAAAGTGTGAATCCATTTCCTCTTGGGCCAAGGA GCTGCAAATTGTGAAATGCTGCTCAGAATCAATAGCTTGGAAAGCATGCACGGAATCAAATGCTAAAACCACAGGACTTG ATCCTTGGTGGTTTGAAGATGTTTCGGTTCTACGCATTGATCATTTCGTTGAAGTGATCCAATCTATCCAAAGGCGCGGA GTCAAACCACAGCTTGTAGGTTCTTGTATAGCAAATTGGGCAACAAAATGGTTTTCTCAATTCACTCTTGGAATTGATAA GGTGACACCTAAAGACATAACACTCCAGTTACGAAAAGTTTCAACTGAATGCTTGATTAAGATGCTTCCTGTTGAAGAAA ACTCAGTCACTTGCAATTTTTTGCTACAACTGTTAAAGGCAGGGATGGTGTCCAAAATCAACCCTGCTTTGTTGTGTGTT GTAGAAAGAAGGGTAGCCTCAATGTTGGAGCAATGTCGCGTCTTGGATCTCTTGGTTAAAAATCAAGGAGACCATGAATC CTTGTATGATGTTGCTGTTGTAGTTAGGGTGTTGCAATCTTATGTTTGCAGCATGTCGAGTAATCCTGCAGCGAAACTCC ACAATGTTGGACGGTTGGTGGATGGTTATCTTGCACAAGTTGCAAGGGATGAGAATCTCACAGTGGAAAGTTTCATTTCA CTTGTTGAAGCATTGCCTCAAAATGCCAGATTCTGTGATGACAGCCTCTATAGAGCCATTGACATGTTCCTTAAGGCACA TTCCAATTTGACAGGAGAAGATCGATCAGGTGTGTGCAGGGTCCTGGAATACCATAGATTGTCGCAGGAAGCACGTCAGC ATGTGATGCACAATGATAGGTTGCCCTTGAAATTAACAACAAAATTTGTCCTTCTAGAACAAGTGAACATGACAAGGTCA ATGACTAATAATGGATCGAATTACCGAAGGACTAATACTCAGACAACAATCAGAGTAAGCAAAGATTTTGAAAAGAGACA GATAAATGCACAGGAAATAAAGATGATGAGCAAAGATGTTGAAATGATGAAGTCACAACTCTTGGAACTAAATACCTGTA AAATAAAGCTCCAAATGCAACTGAAGAGATGCATTCGTTGA
Protein sequence (LotjaGi5g1v0219900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKSLECEIPLGGISIVDGVKRNRCVVLPAKVPIVADSLERTKQNWIARANSTTDLIIQVGDSSFHLHKLAMASRSEYL NRLIFERESNRGNAGDSLKIQLKNLPGGAKTFELVVKFCYGWKFDMTATNIAPLYCAAHFLEMSEDLVEGNLIFKAEPFL TFLIYSSWKDTFRILKKCESISSWAKELQIVKCCSESIAWKACTESNAKTTGLDPWWFEDVSVLRIDHFVEVIQSIQRRG VKPQLVGSCIANWATKWFSQFTLGIDKVTPKDITLQLRKVSTECLIKMLPVEENSVTCNFLLQLLKAGMVSKINPALLCV VERRVASMLEQCRVLDLLVKNQGDHESLYDVAVVVRVLQSYVCSMSSNPAAKLHNVGRLVDGYLAQVARDENLTVESFIS LVEALPQNARFCDDSLYRAIDMFLKAHSNLTGEDRSGVCRVLEYHRLSQEARQHVMHNDRLPLKLTTKFVLLEQVNMTRS MTNNGSNYRRTNTQTTIRVSKDFEKRQINAQEIKMMSKDVEMMKSQLLELNTCKIKLQMQLKRCIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 35 | 190 | 156 | 5.0E-13 | – | |
| PANTHER | 41 | 513 | 473 | 1.4E-206 | – | |
| PANTHER | 41 | 513 | 473 | 1.4E-206 | ||
| SUPERFAMILY | 46 | 145 | 100 | 2.75E-15 | ||
| Pfam | 52 | 144 | 93 | 1.8E-11 | ||
| ProSiteProfiles | 55 | 128 | 74 | 12.909 | ||
| SMART | 55 | 152 | 98 | 8.4E-8 | ||
| CDD | 55 | 155 | 101 | 4.16804E-34 | – | |
| ProSiteProfiles | 215 | 476 | 262 | 67.759 | ||
| Pfam | 216 | 451 | 236 | 1.3E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0219900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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