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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0220200 |
| Transcript ID | LotjaGi5g1v0220200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycoprotein membrane GPI-anchored protein; TAIR: AT1G54860.1 Glycoprotein membrane precursor GPI-anchored; Swiss-Prot: sp|P59833|UGPI3_ARATH Uncharacterized GPI-anchored protein At5g19250; TrEMBL-Plants: tr|A0A0B2Q8I6|A0A0B2Q8I6_GLYSO Putative GPI-anchored protein; Found in the gene: LotjaGi5g1v0220200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52655089..52656522) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTCGGCAATAGTTGTGTTTCTTAATTTTACATTAACAGTGTACAACCAACCATTTTAAATATTAATTGGAAGCGCTT AGTATAGCTTTCTTCTTCCAATTTATGAAAATTTTAACATTCTCGAAATATATTATAATTTTTCCTTTTCATTCTTATTC TTATTCCATTCTCCTTGTCAAAGTTTCTTTTATTTCCTCCCCTCTACCCTCCCCTGGATCTTATATAATGGTAACCCTCT ATCCTAATCAAATGAACTCAGATAATTAAGGCATTCACTAGTAAGTACAACTGTTGCACTATTAATTCAGCCACATGGCT TCCTTCAAACTAGGTCTCTACCTTCTTGTGGCTGTCTTTTCCCTCCACCTGCTTCCAAGTCCAGTCATGTGTGGAGGTAA TACAAAAACTGGTCCCTGTTTATTTAATATTTGTCATATTACTTTGTCTCTTGAGACTTGAAATAATCATCTCTACTAGT GACTCAACCATTGCACTATTATAAAGTTTAAATATATTTTCTTCATGCAAAATTTGTAATTTATAACTTTAATTTCTACT ATAAATTTTAAAAATCATGTAGTTTATTTTATAACTCTAGCACACATGCATTGCTTTATGTAACTACCTTCCTCATGCAG AAGAGGAGAAGACTCTGCTCCATGACATCAACACATACAGAAAAATCTTCAACCTCCCTGTCCTGGAGAAACGCAGCAAG CTCTCTTGCTTAGCTGAAAAGATTGCAGACGACCTAGATGATCTTGAAGATGAGAAATGTGAAAACTTCTACCCTGCACC TGGAAGCTACTCTAAGCTCCCCAACTTCGAGAAGAGTGTTTCAAAATGTAAGATTAATCTCAACACCACAAGTGGTGGTG TTGTTATGCCTGTTTGTGTGCCCAAATTGGACCCAGATTATCTGTTTTCCAACTACACCAAATCGAGTCGGTTCAACAAG TATCTGAACAATTCAAGGTATACAATAGCAGGGGTTGGTTCTGAAGATAATTGGATGGTTCTTATTATCAGTACTGATAC AGCTTCTGGAGATTTCTCCTCTGCAACTTCTCTGCTTTCTGAAGCTTGGACGAGCCACTGCATGCTATTGGCCTTCTTCA GTGTGCTTGTTGTTCTCCTAAGCTAAATTGATTGTTATCTATGCTTCATGTGGTGGGATTTTTTTTATTTATTATTGATT TGATTTCAATTCATTTTCTTTGTTACTGGGACAAAATATTCATTTTTCTGTAATTTTGTTTGTGCATATGGGGAAATGTG ACATTGTTTTCTTGATCCTGGACTTGTCTAATGTATTTGTGGATCATGTATATTGTGATTTGAGCCCTCAGAAAAAAATC TGTATATTGTGATTTGACTGTCAATATATTTGACCAATAAAATTTGGAGTGATGTATTTTTAAAATTATTTCTT
CDS sequence (LotjaGi5g1v0220200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTTCAAACTAGGTCTCTACCTTCTTGTGGCTGTCTTTTCCCTCCACCTGCTTCCAAGTCCAGTCATGTGTGG AGAAGAGGAGAAGACTCTGCTCCATGACATCAACACATACAGAAAAATCTTCAACCTCCCTGTCCTGGAGAAACGCAGCA AGCTCTCTTGCTTAGCTGAAAAGATTGCAGACGACCTAGATGATCTTGAAGATGAGAAATGTGAAAACTTCTACCCTGCA CCTGGAAGCTACTCTAAGCTCCCCAACTTCGAGAAGAGTGTTTCAAAATGTAAGATTAATCTCAACACCACAAGTGGTGG TGTTGTTATGCCTGTTTGTGTGCCCAAATTGGACCCAGATTATCTGTTTTCCAACTACACCAAATCGAGTCGGTTCAACA AGTATCTGAACAATTCAAGGTATACAATAGCAGGGGTTGGTTCTGAAGATAATTGGATGGTTCTTATTATCAGTACTGAT ACAGCTTCTGGAGATTTCTCCTCTGCAACTTCTCTGCTTTCTGAAGCTTGGACGAGCCACTGCATGCTATTGGCCTTCTT CAGTGTGCTTGTTGTTCTCCTAAGCTAA
Protein sequence (LotjaGi5g1v0220200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFKLGLYLLVAVFSLHLLPSPVMCGEEEKTLLHDINTYRKIFNLPVLEKRSKLSCLAEKIADDLDDLEDEKCENFYPA PGSYSKLPNFEKSVSKCKINLNTTSGGVVMPVCVPKLDPDYLFSNYTKSSRFNKYLNNSRYTIAGVGSEDNWMVLIISTD TASGDFSSATSLLSEAWTSHCMLLAFFSVLVVLLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 194 | 194 | 5.3E-89 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 194 | 194 | 5.3E-89 | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| Phobius | 27 | 176 | 150 | - | – | |
| Coils | 52 | 72 | 21 | - | – | |
| Phobius | 177 | 194 | 18 | - | – | |
| Phobius | 195 | 195 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0220200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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