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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0222700 |
| Transcript ID | LotjaGi5g1v0222700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat domain phosphoinositide-interacting protein; TAIR: AT3G62770.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q93VB2|AT18A_ARATH Autophagy-related protein 18a; TrEMBL-Plants: tr|V7BK39|V7BK39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0222700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52961589..52965452) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGATTTAGTTTTTGGAATTTTTCTTGGAAGTTACTACTAGGAATAAAAGCACAGAATAAACAAGTTGTGGTGGAGTC ATTGGTGTAGACACATATTATTATCCCTTGTAAAACAAGCAATACTCAACACCCAACCCCAACTCATCTCACCTGGGTCA TATCTTAGCTGCTTCATCATTCATCGTCCCAAATCCAACAAACACCATCATCTTCAACAACAACAACAACATCAACAAAT CCGAATTTAACTTGTCTGTGTTTCCTCAACACCAACACAACAAACAACCTTAACCCCCCCAAATGTCTCACACCCCACAA ACCCTAATCCCCGTTGATTCCGACGAATCATCACCCGATTCACCTCCTCCTCCTCCGGCGACCCAGACACCCAACCCGCC GTCCTCCACTTCCACCACCCCCTCCACCCTCCTCCACCTCTCCTTCAACCAAGACTCCGGCTGCTTCGCCGCCGCTACCG ACCAAGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATTTTCCGCCGCGAGTTCGGCCCCGGCGGCGGCATCGGC CTCGTCCACATGCTCTTCCGCTGCAACATACTCGCCTTCGTCGGCGGCGGCGGTGGCGGTTCCGACCCACGTTACCCGCC GAATAAGGTCATGATCTGGGACGACCACCAGTCTCGCTGCATCGGGGAGCTCTCGTTTCGATCGGAGGTTAAAGGGGTTC GTCTCCGGCGAGACCGAATCGTGGTGGTTCTCGGTCACAAGATATTCGTGTACAATTTTGCGGATCTTAAGGTTATGCAT CAGATTGAGACCATTACGAACCCGAAGGGGCTCTGTGAGGTTTCTCATGTTTCGGGGACGATGGTGTTGGTGTGTCCAGG GTTGCAGAAGGGTCAGGTTAGGGTGGAGCATTATGCTTCCAAGAGAACTAAGTTCATCATGGCTCATGATTCCAGAATCG CCGCGTTCGCTCTCACTCAGGATGGCCGGTTGCTCGCCACCGCGAGCTCTAAGGGGACCCTCCTTAGGATTTTCAATACC TTGGATGGTACTTTGCTCCAAGAGGTGGATTCTAGTTTCTGCCTATTTCAGATTATTGTGTTGTATATGTAGAAATGTCA TTGTTTCTTTATTTGCTTGTTTGTTTCCATTAACAAAATAGATTTTTTCGCACTCAAAGGAGTGCAAATACCTGAGGGAA TAGTGAGATAGGCAAAGTGAAAAATGGGAAAGGAAGGGAAAGGTGGAGAGAAGTGTAGAGTGAGTGTAACAATTAGGGTG GGATGAAATCAAGGTTATCCTAAGAATTTGTTTGTTAGTTCAATTGCTAGGAGTAGAATAATTGAAATGATACTTGAGAA TTAGGCTGAGGTTCATTCATTTGCTGCTGATTGTTTTAAAATTGGTTGGTTAAGGGTTCTTTTTGTGTTGGGTTCAACTG TTTTTGAAGTTTGAATGGAAAATTTTGGTGGGGTGATGATTGCAGGTAAGGAGAGGTGCTGACCGAGCAGAGATATACAG CCTTGCCTTTTCTTCTACTGCACAGTGGCTTGCTGTCTCGAGTGACAAGGGAACCGTTCATGTGTTTAACCTGAAAGTTG ATTCCGGACTATTGGGGCATGATAGATCACATAGTACATCTGAGTCTAGTCCTTCTAGCCCAACGGCGGGTTCATCTCTT TCATTTATTAAAGGTTTGTACCCTTATCCACAGTGAGTTATTCATAAGTAATCAATTGAACATATATGGAAATTAAGTGC CTTGTTCACTAACTACAGAAGAGCGAGAGAGGCATTTGTCGCTGTAACTTACATACCAGAGTTTTGTTTAGTCAGGAAAT TATGATTTTTTGACAAGTTGTTGACAATCATCTTCATTCTGTCTGTTTTATAGGTGTGTTGCCGAAGTATTTCAGCTCAG AGTGGTCTGTGGCTAAATTTCACTTGCAAGAAGGTTTGCAATATGTTGTTGCTTTTGGCCATCAAAAGAACACAATTGTA ATACTTGGCATGGATGGCAGGTAATTCATAATCGATCATATCTTGGCCCGCTTTAGTTTGTCATTTCCCTTTATTTATTT TTGGGAGGAGCTTAGAGATATTAGACACATTCACATAGGCCCTTCCTTGTGCATTGCTTGCTAAATTTGATAGAGGATAA TATCTTTCTTTAGGTTTTCTGCCAATGGTTGTCATAACAGAAAAATCAATTTGATTTCTAGTCAAAATGTGGATGATATA TTATGCTTTTCTTAGGCTCTAAGGTTCAAATACTTCTGGTCTCTTGAATATTGACACCAGGAAGCTAGCTTCTGCTGTGG TTTTATTTATTATAATCGAGAAAAGATACCAGGTTTTGGAACAATATATGTCAAAAAGAAATAAGATAAAATGAGGGTCA TTTACATATTTAAATGCCCAACTCTAATCTTACCAATTTATTATTGTTAAATGAAATGTTTAGCAGTTAATTCTTTGTCT ATGACTCACTCTTTTTCCTTGTGAGTTAATTTTTTATTTAATTGTTTATGCACAGCTTCTATCGATGTCAGTTTGATTCT GCAACCGGTGGAGAGATGACCCAACTCGAATATTACAATTTCCTAAAGCCAGAGGAGACATTCTAGCATGGATGTACCAT GATGTATATATCTCCAGTGCCACTTGCTGTGAATACCATTTGAATTTGCTGTAAATACGAGTACGAGCCCGGTGATTGCA GCTTATCTACCAGAAAAAAAGCGCTAGATAAGCTCCAATAAGTGCTCTTTGGTTTGCATCCAATCAAGTTGTATATGGGA GGCCACAAATGTTATCCCGTCCACTCCAACACTCCGTTGCCCTCCATGTCATGTACATTCTAAACTTCGCTACCGATTAG AATGAGGGGAGCTCTCCCATTTCCTTCCTAATTTAGAGGGTTGTGTTGTCATCTCCTTGCGTATTATCACAATGCAAGTT TCAAAATTTGTTCTTATCTGCTATGGTATATCATCTATTACATTAAATAATCACTTACTGGTTAATTATAAGAGGGCAAC ACTCGGGAGGGAACGTGTTAAAATGACATATTTTGTTATGCTAATTATTATTTTGAAAAATGTTATAGGATTTCTTATGT TGGATTTTAATCAAGGATCATCCGTTGGTGTTGTAATAAGCACTTTGTTAAGTTTCAAAAATTAAGCTAGGTAATGCCTA ATTTGGACCCCCTCAACTAGTACATCTTGAACCTGTCAATTCTTTTTTCTTTTGATAATCAACGCATTACCACTTATGAA TATAAGCTGTATTCTTGTATAGCTGACTGATATTTTTTTTCATATAAGTCAAGTTGAGCTTATATGTGGAGATATTGTCG GATTTCACTATTCAAATTTAAAGAGATCATTTTATGTGAATGGTTGTCATTTTAATTTCCAGTTATTCGATCTTGGTCAG AGCACTACCAATTTATGTCTGCAGCAACTTCAGAAAATTTTGACTCCAGCGAATCTGGATCCAATATTATCGTGTCTAAA AGCGCCATCACATTTTCTTATGCGTTGAGTGGAGTCATTTACAGTTTGTAAAGCTCAGTTGCATTTCACAAAATGCAAAT CGTAATGAATCCTTATAGTTGTGTTTATGACGATGACATTAAAACAAATGACCAGTTGAAAGCTATTGGTTAAATATTAG GTTAGAATATAAATTATAAAATGAGAAACTTAGTTACTTTCCAGTGCATTGGTTAAATATTAGGTTAGAATATAAATTAT AAAAAATTATTCAGAAGATAAAATAACCCTTCAATGCAAAAAGGTATAGAACCCTCAATTTTTAGAAGGGTAGGGTGAGA AATCACATTAATTAATATACAATC
CDS sequence (LotjaGi5g1v0222700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCACACCCCACAAACCCTAATCCCCGTTGATTCCGACGAATCATCACCCGATTCACCTCCTCCTCCTCCGGCGAC CCAGACACCCAACCCGCCGTCCTCCACTTCCACCACCCCCTCCACCCTCCTCCACCTCTCCTTCAACCAAGACTCCGGCT GCTTCGCCGCCGCTACCGACCAAGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATTTTCCGCCGCGAGTTCGGC CCCGGCGGCGGCATCGGCCTCGTCCACATGCTCTTCCGCTGCAACATACTCGCCTTCGTCGGCGGCGGCGGTGGCGGTTC CGACCCACGTTACCCGCCGAATAAGGTCATGATCTGGGACGACCACCAGTCTCGCTGCATCGGGGAGCTCTCGTTTCGAT CGGAGGTTAAAGGGGTTCGTCTCCGGCGAGACCGAATCGTGGTGGTTCTCGGTCACAAGATATTCGTGTACAATTTTGCG GATCTTAAGGTTATGCATCAGATTGAGACCATTACGAACCCGAAGGGGCTCTGTGAGGTTTCTCATGTTTCGGGGACGAT GGTGTTGGTGTGTCCAGGGTTGCAGAAGGGTCAGGTTAGGGTGGAGCATTATGCTTCCAAGAGAACTAAGTTCATCATGG CTCATGATTCCAGAATCGCCGCGTTCGCTCTCACTCAGGATGGCCGGTTGCTCGCCACCGCGAGCTCTAAGGGGACCCTC CTTAGGATTTTCAATACCTTGGATGGTACTTTGCTCCAAGAGGTAAGGAGAGGTGCTGACCGAGCAGAGATATACAGCCT TGCCTTTTCTTCTACTGCACAGTGGCTTGCTGTCTCGAGTGACAAGGGAACCGTTCATGTGTTTAACCTGAAAGTTGATT CCGGACTATTGGGGCATGATAGATCACATAGTACATCTGAGTCTAGTCCTTCTAGCCCAACGGCGGGTTCATCTCTTTCA TTTATTAAAGGTGTGTTGCCGAAGTATTTCAGCTCAGAGTGGTCTGTGGCTAAATTTCACTTGCAAGAAGGTTTGCAATA TGTTGTTGCTTTTGGCCATCAAAAGAACACAATTGTAATACTTGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATT CTGCAACCGGTGGAGAGATGACCCAACTCGAATATTACAATTTCCTAAAGCCAGAGGAGACATTCTAG
Protein sequence (LotjaGi5g1v0222700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHTPQTLIPVDSDESSPDSPPPPPATQTPNPPSSTSTTPSTLLHLSFNQDSGCFAAATDQGFRIYNCDPFREIFRREFG PGGGIGLVHMLFRCNILAFVGGGGGGSDPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLGHKIFVYNFA DLKVMHQIETITNPKGLCEVSHVSGTMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAAFALTQDGRLLATASSKGTL LRIFNTLDGTLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHSTSESSPSSPTAGSSLS FIKGVLPKYFSSEWSVAKFHLQEGLQYVVAFGHQKNTIVILGMDGSFYRCQFDSATGGEMTQLEYYNFLKPEETF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| MobiDBLite | 16 | 31 | 16 | - | – | |
| SMART | 29 | 67 | 39 | 68.0 | ||
| PANTHER | 35 | 395 | 361 | 1.2E-220 | – | |
| PANTHER | 35 | 395 | 361 | 1.2E-220 | – | |
| SUPERFAMILY | 36 | 291 | 256 | 8.43E-32 | ||
| Gene3D | 44 | 377 | 334 | 1.8E-19 | ||
| SMART | 123 | 158 | 36 | 320.0 | ||
| SMART | 205 | 245 | 41 | 0.2 | ||
| SMART | 248 | 289 | 42 | 0.0093 | ||
| Pfam | 258 | 289 | 32 | 0.003 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0222700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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