Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0223700.1

Overview

Field Value
Gene ID LotjaGi5g1v0223700
Transcript ID LotjaGi5g1v0223700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cytochrome b6-f complex subunit 4; TAIR: ATCG00730.1 photosynthetic electron transfer D (ChrC); Swiss-Prot: sp|Q9BBQ5|PETD_LOTJA Cytochrome b6-f complex subunit 4; TrEMBL-Plants: tr|A0A1D8R9R1|A0A1D8R9R1_9MAGN Cytochrome b6-f complex subunit 4; Found in the gene: LotjaGi5g1v0223700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:53020659..53021183) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCCGGTTCTTTCGGAGGATGGATTTATAAGAATTCACCTATCCCAATAACAAAAAAACCTGACTTGAATGATCCTGT ATTAAGAGCTAAATTGGCTAAAGGAATGGGTCATAATTATTATGGAGAACCCGCATGGCCCAACGATCTTTTATATATTT TTCCAGTAGTGATTCTGGGTACTATTGCATGTAACGTAGGCTTAGCAGTTCTAGAACCATCAATGATTGGGGAACCCGCG GATCCATTTGCAACCCCTTTGGAAATATTGCCCGAATGGTATTTCTTTCCTGTATTTCAAATACTTCGTACAGTGCCAAA TAAGTTATTGGGTGTTCTTTTAATGGTTTCAGTACCCGCAGGATTAGTAACAGTACCCTTTTTGGAAAATGTTAATAAAT TCCAAAATCCATTTCGCCGTCCAGTAGCAACAACCGTTTTTTTAATTGGTACCGCAGTGTCTCTTTGGTTGGGTATTGGA GCAACATTACCCATTGAGAAATCCCTTACTTTAGGTCTTTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0223700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCGGTTCTTTCGGAGGATGGATTTATAAGAATTCACCTATCCCAATAACAAAAAAACCTGACTTGAATGATCCTGT ATTAAGAGCTAAATTGGCTAAAGGAATGGGTCATAATTATTATGGAGAACCCGCATGGCCCAACGATCTTTTATATATTT TTCCAGTAGTGATTCTGGGTACTATTGCATGTAACGTAGGCTTAGCAGTTCTAGAACCATCAATGATTGGGGAACCCGCG GATCCATTTGCAACCCCTTTGGAAATATTGCCCGAATGGTATTTCTTTCCTGTATTTCAAATACTTCGTACAGTGCCAAA TAAGTTATTGGGTGTTCTTTTAATGGTTTCAGTACCCGCAGGATTAGTAACAGTACCCTTTTTGGAAAATGTTAATAAAT TCCAAAATCCATTTCGCCGTCCAGTAGCAACAACCGTTTTTTTAATTGGTACCGCAGTGTCTCTTTGGTTGGGTATTGGA GCAACATTACCCATTGAGAAATCCCTTACTTTAGGTCTTTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0223700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPA DPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQNPFRRPVATTVFLIGTAVSLWLGIG ATLPIEKSLTLGLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 49 49 - –
PANTHER
PTHR19271:SF16
6 174 169 2.3E-59 –
PANTHER
PTHR19271
6 174 169 2.3E-59 –
Hamap
MF_01344
15 174 160 45.047
IPR005870
PIRSF
PIRSF000033
15 174 160 4.1E-94
IPR005870
TIGRFAM
TIGR01156
17 174 158 6.3E-100
IPR005870
SUPERFAMILY
SSF81648
21 170 150 1.83E-43
IPR036150
Gene3D
G3DSA:1.20.5.510
23 80 58 2.4E-37 –
CDD
cd00290
28 174 147 4.18004E-59
IPR005798
TMHMM
TMhelix
49 71 23 - –
Phobius
TRANSMEMBRANE
50 71 22 - –
Phobius
CYTOPLASMIC_DOMAIN
72 108 37 - –
ProSiteProfiles
PS51003
79 174 96 15.816
IPR005798
Pfam
PF00032
79 168 90 3.0E-19
IPR005798
Gene3D
G3DSA:1.10.287.980
81 174 94 9.2E-38 –
Phobius
TRANSMEMBRANE
109 128 20 - –
TMHMM
TMhelix
109 128 20 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
129 139 11 - –
Phobius
TRANSMEMBRANE
140 159 20 - –
TMHMM
TMhelix
143 165 23 - –
Phobius
CYTOPLASMIC_DOMAIN
160 174 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009055
Molecular function Electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of
GO:0009767
Biological process Photosynthetic electron transport chain A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0042651
Cellular component Thylakoid membrane The pigmented membrane of any thylakoid.
Subterm of
GO:0045156
Molecular function Electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0223700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…