Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0223700.2

Overview

Field Value
Gene ID LotjaGi5g1v0223700
Transcript ID LotjaGi5g1v0223700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cytochrome b6-f complex subunit 4; TAIR: ATCG00730.1 photosynthetic electron transfer D (ChrC); Swiss-Prot: sp|Q9BBQ5|PETD_LOTJA Cytochrome b6-f complex subunit 4; TrEMBL-Plants: tr|A0A1B1FK37|A0A1B1FK37_POGCB Cytochrome b6-f complex subunit 4; Found in the gene: LotjaGi5g1v0223700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:53020659..53021286) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCCGGTTCTTTCGGAGGATGGATTTATAAGAATTCACCTATCCCAATAACAAAAAAACCTGACTTGAATGATCCTGT ATTAAGAGCTAAATTGGCTAAAGGAATGGGTCATAATTATTATGGAGAACCCGCATGGCCCAACGATCTTTTATATATTT TTCCAGTAGTGATTCTGGGTACTATTGCATGTAACGTAGGCTTAGCAGTTCTAGAACCATCAATGATTGGGGAACCCGCG GATCCATTTGCAACCCCTTTGGAAATATTGCCCGAATGGTATTTCTTTCCTGTATTTCAAATACTTCGTACAGTGCCAAA TAAGTTATTGGGTGTTCTTTTAATGGTTTCAGTACCCGCAGGATTAGTAACAGTACCCTTTTTGGAAAATGTTAATAAAT TCCAAAATCCATTTCGCCGTCCAGTAGCAACAACCGTTTTTTTAATTGGTACCGCAGTGTCTCTTTGGTTGGGTATTGGA GCAACATTACCCATTGAGAAATCCCTTACTTTAGGTCTTTTTTAAATTGATTCAATTGTGAAATAAAATATCTTGCCATA TGCATCGTGTATCTAGGGAGAATTCACTTTGAAATGACTAATCCCTAGATACATCTATTCCATTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0223700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCGGTTCTTTCGGAGGATGGATTTATAAGAATTCACCTATCCCAATAACAAAAAAACCTGACTTGAATGATCCTGT ATTAAGAGCTAAATTGGCTAAAGGAATGGGTACTATTGCATGTAACGTAGGCTTAGCAGTTCTAGAACCATCAATGATTG GGGAACCCGCGGATCCATTTGCAACCCCTTTGGAAATATTGCCCGAATGGTATTTCTTTCCTGTATTTCAAATACTTCGT ACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCAGTACCCGCAGGATTAGTAACAGTACCCTTTTTGGAAAA TGTTAATAAATTCCAAAATCCATTTCGCCGTCCAGTAGCAACAACCGTTTTTTTAATTGGTACCGCAGTGTCTCTTTGGT TGGGTATTGGAGCAACATTACCCATTGAGAAATCCCTTACTTTAGGTCTTTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0223700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILR TVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQNPFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 85 85 - –
PIRSF
PIRSF000033
15 38 24 7.5E-6
IPR005870
Gene3D
G3DSA:1.20.5.510
35 57 23 1.3E-6 –
PIRSF
PIRSF000033
35 151 117 1.2E-63
IPR005870
SUPERFAMILY
SSF81648
35 147 113 2.88E-35
IPR036150
TIGRFAM
TIGR01156
36 151 116 3.9E-68
IPR005870
CDD
cd00290
36 151 116 5.89207E-45
IPR005798
PANTHER
PTHR19271:SF16
38 151 114 6.5E-53 –
PANTHER
PTHR19271
38 151 114 6.5E-53 –
Pfam
PF00032
56 145 90 2.1E-19
IPR005798
ProSiteProfiles
PS51003
56 151 96 15.816
IPR005798
Gene3D
G3DSA:1.10.287.980
58 151 94 6.2E-38 –
Phobius
TRANSMEMBRANE
86 105 20 - –
TMHMM
TMhelix
86 108 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
106 116 11 - –
Phobius
TRANSMEMBRANE
117 136 20 - –
TMHMM
TMhelix
120 142 23 - –
Phobius
CYTOPLASMIC_DOMAIN
137 151 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009055
Molecular function Electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of
GO:0009767
Biological process Photosynthetic electron transport chain A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0042651
Cellular component Thylakoid membrane The pigmented membrane of any thylakoid.
Subterm of
GO:0045156
Molecular function Electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0223700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…