Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0229100 |
| Transcript ID | LotjaGi5g1v0229100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor family protein; TAIR: AT4G02080.1 secretion-associated RAS super family 2; Swiss-Prot: sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A; TrEMBL-Plants: tr|C6SW20|C6SW20_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0229100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53627139..53629793) extracted from Lotus japonicus Gifu genome v1.2.
TGACAATTTAACAGAGATTTAGATGATCTTTTATGCTACTTGTGGAAAGTTGAAACGGGTATAGTTGCCTCCAATCCAAC ACTTGATCATTCTTTAAAGAAAATTATTTTATTAATATTGACCATTGCATTACACAAATAGAGCTTATCTAAGCCTTCAC TCTTGACCCTAACAGGCTGACACTCTCCTTCATCCATATGATTAAGAGTAAGATAGTGGACTGTCATGGGATTTGGATCG GACGATCGTGTCTCAGGGAGTTGGGTTTGCCTCGGTCACCATAATGGGTTTGAGGATGCCTTTGGGACGAAAGACTGCTT ATAGAGGTACTTACAATCATCCATGAACACAATTCTCACATTAACAACATATATCGAACATACAACCTTCCTTATGAGAA GAATTGGAGAAATGCCCTATTATCCCTACCAATTGAACTAGCACGTGTTGTCTATTTGTCATTATTTTTAGAGAAATACA ATGCAACTGATCATTATCCAATTAAAGGAATTAGGCAAGTTTCTACCACATTAGGTGGTTTTAATATATATATATATATA TATCTCATTAAATTAGGTGTCAAGCCCATATAATTTGCTGGACCTCACATATCACTTTCAAACTAATAAAAGTGGGAGAG TTAAAAACATTTGTTTCTCCAAATTTCTCTTTTTTGTTTTGTTTTGGGCCTGTATTATTTGGACTCAAAGAGTTAAGCTC AAAACACTTGAGCTGAACCGGTGAGCGGTCTGTCCTACTTGTACAAAAACTCGTGCCTCAGCAGCTGCAAACACATCTAG ATCCTTTGTAACTGTTTGAGTCTTCCCCAGATTCATTCATCATGTTCTTGTTCGATTGGTTTTATGGGATTCTCGCATCG CTCGGGTTATGGCAGAAGGAGGCTAAGATCTTATTCTTAGGCCTCGATAATGCCGGCAAAACCACCTTGCTTCACATGCT CAAAGACGAGGTTATTCATTCTTTATTTCTACAATTTCAATCTCGGATCCACTCTTTCAATTCATCTACTTTTTTATGGT TTGATGGGTTTTTTTGTAATGGGAATTGATTTTGCAGAGATTGGTCCAGCATCAGCCAACACAGTATCCAACATCAGAAG AGTTGAGCATTGGGAAGATCAAGTTCAAGGCTTTTGACCTTGGGGGTCATCAGATTGCTAGAAGAGTCTGGAAAGACTAC TATGCCAAGGTCTCTCTATTCCTTTTCCAGCCTACATTTACACAAAAGCACACACTTTGGTTTATGAAAATATATCATTA GATGTCTCTTGGTTTTTTTGTATATTAGGAATTTAGGTTAAGTCTGGCCCTGCAATATGTGTAGTTCTAGCTGTTAGCAT GGATATAGTTTTCAATCCAATGCTCACTACTGGTTTTGTACTAGTATGATCAAGTTGTTACAAATAATACTTTTGTGTTA TGGAATACTATAATCTATTGTGAAACTAGTATCGAATTGTGTCTTGTGACTAGAGCTAAGTTAGAGGTTTGATGCCTTCA TAATCCCAGCTAGACAGTTATTGTTTATCTGATTCATGGGAGGCAGATAGTATACATGGTACTTCGCTGATAGCGCCTTT TGTCTTTGAAGGGTTTGCTAATAGTATGTTATCAGACATTTCTTATGCAGTTTTTCTTATGGAGTGTCTCGTTTGTTGTC CTATATACTTAAATCAAAGGATAATCCAATGCTCATGAAGTTTTTCATTTTGACTTGATTCATGAGAGGCAGACCTCATT TGCTGAGTACATTGATGCTATTATTTTCCTCTTTGGAACGGCTACTGACCATATCTCTTTGGAAAAATTCTCTGAACACA CCTAGCATCCATGGTCATGGAAGTTGATTTCCCTTTTTTGTTTTTTAATTTTTTTTGCATTATTATTCTCAAGCATGAAG CTTTTAGATGGTTTAGACTCTAGAGTAAACATCATCCGTCTTTGATGCAGGTAGATGCTGTGGTCTACTTGGTTGATGCC TATGACAAGGAAAGATTTGCTGAGTCGAAAAAAGAGCTGGATGCTCTCCTCTCTGATGAGTCTTTGGCTAATGTCCCCTT TCTTATTCTTGGAAACAAGATAGATATTCCATATGCTGCCTCTGAAGAAGAGTTGCGTTACAGTTTGGGCCTGGCCAACT TCACCACAGGCAAGGGCAAGGTAAATTTGTCAGACTCTAATGTCCGTCCTATGGAGGTATTCATGTGCAGTATTGTGAAG AAAATGGGTTATGGAGATGGTTTCAAATGGGTCTCTCAGTACATCAAATAGGCCATTAGTAATAGATGGTTTGTATTGTG TTAAGTTTATTCCTTTACTTTTGAATTGGAGGTGTTGTTAGTATAAATTGCTACTGAAGAAATTGCAGAATATTTCAGGT TTTTCTTTGAAAATGTCTGAGACAACCCTCCATCTACATTAATCCAATATATGCTGAACCCAATGTTTTGTTATTTTTGG TGATTGATTATATTTGCTCTGAAGAAGAGAGGGTATAATCTATACGCAAGAACTCTTTTTCTACACCTATGCTTGAAAAA AGCACATTTTACACAAGAAAATCGACCCATGTTCTCTTATCTAGCCTGCCCTATGGGGTTATTACTTAATCTTAGGTGGA CTAGTATGATTATTT
CDS sequence (LotjaGi5g1v0229100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTTGTTCGATTGGTTTTATGGGATTCTCGCATCGCTCGGGTTATGGCAGAAGGAGGCTAAGATCTTATTCTTAGG CCTCGATAATGCCGGCAAAACCACCTTGCTTCACATGCTCAAAGACGAGAGATTGGTCCAGCATCAGCCAACACAGTATC CAACATCAGAAGAGTTGAGCATTGGGAAGATCAAGTTCAAGGCTTTTGACCTTGGGGGTCATCAGATTGCTAGAAGAGTC TGGAAAGACTACTATGCCAAGGTAGATGCTGTGGTCTACTTGGTTGATGCCTATGACAAGGAAAGATTTGCTGAGTCGAA AAAAGAGCTGGATGCTCTCCTCTCTGATGAGTCTTTGGCTAATGTCCCCTTTCTTATTCTTGGAAACAAGATAGATATTC CATATGCTGCCTCTGAAGAAGAGTTGCGTTACAGTTTGGGCCTGGCCAACTTCACCACAGGCAAGGGCAAGGTAAATTTG TCAGACTCTAATGTCCGTCCTATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGAGATGGTTTCAAATG GGTCTCTCAGTACATCAAATAG
Protein sequence (LotjaGi5g1v0229100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRV WKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLILGNKIDIPYAASEEELRYSLGLANFTTGKGKVNL SDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 193 | 193 | 1.3E-129 | – | |
| PANTHER | 1 | 193 | 193 | 1.3E-129 | – | |
| CDD | 2 | 192 | 191 | 6.13619E-133 | – | |
| SMART | 4 | 193 | 190 | 3.9E-17 | – | |
| SMART | 4 | 192 | 189 | 5.8E-131 | – | |
| Pfam | 8 | 192 | 185 | 1.2E-65 | ||
| ProSiteProfiles | 14 | 192 | 179 | 30.308 | ||
| SUPERFAMILY | 17 | 192 | 176 | 2.57E-43 | ||
| TIGRFAM | 19 | 137 | 119 | 1.4E-15 | ||
| Gene3D | 21 | 192 | 172 | 5.4E-60 | – | |
| PRINTS | 22 | 45 | 24 | 2.6E-74 | ||
| PRINTS | 50 | 74 | 25 | 2.6E-74 | ||
| PRINTS | 77 | 102 | 26 | 2.6E-74 | ||
| PRINTS | 122 | 143 | 22 | 2.6E-74 | ||
| PRINTS | 166 | 190 | 25 | 2.6E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi5g1v0229100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…