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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0231300 |
| Transcript ID | LotjaGi5g1v0231300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group B-like protein; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi5g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53871614..53874542) extracted from Lotus japonicus Gifu genome v1.2.
CCAGCCAACACAACACACACTAACTTTTAGAGCTAACTTAGTTACCCTCTCAAACTCAATCATGCAATGCAAGGAGAAAT TTGACTCGGAGGAGAGCTTCTACACCAAACTCATTGAGTTCTTGGAGTACTATTCTGGACTTACTCTAATGTGAGTGAGT TAATTCCATTACACAAAAAAATTAAAAGCTCTTCTTAATTTTTATCCTCAACGTGCCTTATTATTTATGAGTCAATTGTA CTTTTGCAGTTTCAATGTCCGAGAAACATTGTTGGACTTGTACCTGTTTTACTTGGAGGTCACCACAAGAGGAGGATATC ACCAGGTACATGCTTTCTCATGCTTCTATCAACATATCAAGTTTATAATCTATATTCATGGCAAAATTATTTTTTAATTT TTCGTATATTGTTAGATAAGTTTCTCTTAGTGTTGAGAAGTCTCATTAATTCGAGATATGACTAAGATGATAGTCTTTAT AAGGGTAAACCAATTTTTACCTTCAAGCTAGTGGGGTAGAGTTAGGCCTTCCATATCTAATATGTTATTATAGTCTATCC TTATCCTTGGATCGTTTACTAGAGACCACCAAATCTCATGTTTCAAATCTCAAGCCCTGGGTGGGGACTGGGGAGTGAGA GAGCGTATTGAGAAGTTTCACATTGACTAGAGATAGAGTGGTCAAGGTAGTCCTTATAAAGGGTAGAGTAATTCTCACAT CCAAGCTAGCTTTTGGGTAGAGTAATCTTTGATTCTGATACAGATGTTTCAATTTAGTATCATTGCTATTGTTATGGATG GATTCTGTTTCATGTTTTCAGGTTGGTCGAGATAAGAAATGGGGTGAAGTTGTCTCTGCACTGAAATTGGAAGGCAACAA TGCAAAGTTATCTGCTCAAGTTGAAATGCTCTATGCATATCTTCTTTATGATTTCGAGCAAATGTACTTCTTCCAGTGTC CAGCAAAGCAAGCCAGCACCAAAGGTTAATCTAAGAGACCAATTAGTAGCTTTACTTAGTATTGATTCAGTCTGGTATTT CACACATTTTTTTATTGTTTATTCTTAGCTTCTATATAAATGATTTTGATTTACCTTTACTGCTTGGACATAAAGAAAAG ACATTTCAATTTTTAGCAGCCCTATTGCATGATATTTGTTCTTTCATGGCAATCTAATTGCCGCAATACCAGAGAACATG AGAAAATTTCCACATGAGATTGAGAGGTTCCTGGTCCAATTTAGATAATTAGGGAGCAATGTAAGGTAATTATGAAGCTA AATTAGGAATGATTTTGCACTCATAAATGAATGAAATCAGCACAATAAGGGGTATAGGATTAGCATACGAGAAAAGATGA TAATCACTTGAGTATTATAAAGATGAATAGATGATGATCACTTGGCGTAGCTTGGTCTCTCTCCTAGGAGCACTAGGTGA ACAATATTGTTGTTGCATTTTGGTTTTAGGATGACTGTTTAACCTCAATGACTCTCTGTTTTCTCCACACCTTTCATCTT TTGTCAAAGGTCTCCTTAAGAGGAATCACAACCCAGCGGCTAGTCCATGTCAATTAATGAACATTGAAGATGGCCAAAGG GTGACACTGGGCAAGAACTGCTATTCCCAAGTGACAGGTTTGGTTACATTTTTGTACTTAGCTGCATACTTTTCAAATCC TAGGTAGGAGAACAGGCACAATTTTTCTTTGGTAACTTACCAAATTTTATTCAGAACTCCTGTAATACATGATCTATCGT CTTAAAGTATGACACCTGACTTTTATGATAAGTTATTCCCGATTTTGATTCTTTTTCTAAAATTAAAAAATGAGGATAAC TCTCAGATTATGAGAGGGATGTACTGAATGATATCTTGGAATGAGTACTGAAAATTTGCACGTAACTCAATGATATCTTG GGATGAGTTTAAAGGCTGTTCATGTGAATTTGAGGCACTTATGAATAACTTTGGATTCCAAGTTACAGCAGAGGCGGGAG AACAGCCGGTGCTTCTACCGGCGGCACCCTCAAATAACAAAGAAATGAAGAAGCGCAAAGGTGCTCCAGTGGGACAAAGG AATGCATATCAGATATTCCTCAAGAAGGAGTGTGCTCGATTGAGAGCTTGTCGTGAGGCCTCCTTAGATGGCACAAATAT CCGACGCAAGGCTACTGATGCATGGAAGAACATGTCTGAGATTGAGAAACAGGTACATTGAAATTGACACCACATCTAAT ATTCTTGACCCTTTGCCACTTCTGATTATTTTTTATGCAGCCATATGTGGATGAAAGCAAGAAGAGCAAGGAAAAATATA AGGAGGAAGCAAATGAAGCAATGATCACTAACAATAAGCAGCCGAGCGTGGAAGATGTCAAGGAAGAAAACAGGACTAGT TTCTGTGGTGATTATCGCGTAACATCACAACCTGAGGCAGATAACTCACTTGTCAATGCACAACTTGGCATAACTCTTAA AATGGCTGTAGAAGTACCCAAGGAGTCCTTAGAGGAATGGGATACTTATTTGTCACTAGATTTACCAACTGGTGAATCCA AGTAACTCTACTAACTCTAGTTTATGATCGGTTAGTCTTTTTTCTCTTTTGAGGCAATGACTCTGCATCCAGCAGTTTTG TCCCTTTTTTAGACTCAAAACCAAGCTACTAGGTTTATATGGTTTTGAAACAGCAGCAACAGACTTGGAATGGCTGAATA GCATGTTTCCTCGCCTCTTTCACTAGTGAATTATGTATATATTAAAGGCTTTAAGTGTAATGGCTGGATAGGCCTCTTTC ACCAGTGAAGTATGTATGTATTGAAGGCTTTAACTGTTAAGTGTAACTCAAACTCATGGTTTTGAAATAGCAGTAACATG GTTGGAATGGCTGGATATGCCTATTTCACTAGTGATGTATATATTAAAG
CDS sequence (LotjaGi5g1v0231300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATCTTGGGATGAGTTTAAAGGCTGTTCATGTGAATTTGAGGCACTTATGAATAACTTTGGATTCCAAGTTACAGC AGAGGCGGGAGAACAGCCGGTGCTTCTACCGGCGGCACCCTCAAATAACAAAGAAATGAAGAAGCGCAAAGGTGCTCCAG TGGGACAAAGGAATGCATATCAGATATTCCTCAAGAAGGAGTGTGCTCGATTGAGAGCTTGTCGTGAGGCCTCCTTAGAT GGCACAAATATCCGACGCAAGGCTACTGATGCATGGAAGAACATGTCTGAGATTGAGAAACAGCCATATGTGGATGAAAG CAAGAAGAGCAAGGAAAAATATAAGGAGGAAGCAAATGAAGCAATGATCACTAACAATAAGCAGCCGAGCGTGGAAGATG TCAAGGAAGAAAACAGGACTAGTTTCTGTGGTGATTATCGCGTAACATCACAACCTGAGGCAGATAACTCACTTGTCAAT GCACAACTTGGCATAACTCTTAAAATGGCTGTAGAAGTACCCAAGGAGTCCTTAGAGGAATGGGATACTTATTTGTCACT AGATTTACCAACTGGTGAATCCAAGTAA
Protein sequence (LotjaGi5g1v0231300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISWDEFKGCSCEFEALMNNFGFQVTAEAGEQPVLLPAAPSNNKEMKKRKGAPVGQRNAYQIFLKKECARLRACREASLD GTNIRRKATDAWKNMSEIEKQPYVDESKKSKEKYKEEANEAMITNNKQPSVEDVKEENRTSFCGDYRVTSQPEADNSLVN AQLGITLKMAVEVPKESLEEWDTYLSLDLPTGESK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 164 | 144 | 1.4E-37 | – | |
| PANTHER | 21 | 164 | 144 | 1.4E-37 | – | |
| SUPERFAMILY | 37 | 118 | 82 | 4.58E-13 | ||
| Gene3D | 51 | 120 | 70 | 8.0E-13 | ||
| Pfam | 53 | 119 | 67 | 1.8E-9 | ||
| ProSiteProfiles | 53 | 122 | 70 | 11.309 | ||
| Coils | 104 | 124 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0231300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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