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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0232300 |
Transcript ID | LotjaGi5g1v0232300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Golgi apparatus membrane protein TVP23; TAIR: AT1G09330.1 golgi apparatus membrane protein-like protein ECHIDNA protein; Swiss-Prot: sp|Q8LEK2|TVP23_ARATH Golgi apparatus membrane protein-like protein ECHIDNA; TrEMBL-Plants: tr|I3T6A2|I3T6A2_LOTJA Golgi apparatus membrane protein TVP23; Found in the gene: LotjaGi5g1v0232300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53980304..53983370) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCTCCGTTTGCAGCAAGTAGTAGAAAACTACGCGAATCCAAGGACTTGCTTCTTCCATGTCCTCTTCAAGGTTTACT CTATCATCCAATTGTGCTCTTTCAATGAATATGTGGTGTTCATGTTTGTAAAGGGGTTATGTTTTTGTGTATTGCAGGCT GCATCGTTGGCATTTTACATTCTCTCAACGCTCTTTATTGCTAACTTTGTCATCATCTTCGTGGTCACCGTGCTTCTCGC GGCGCTTGATTTTTGGGTGGTTAAGAATGTGAGTGGCCGGATTTTAGTTGGGTTGAGGTGGTGGAATGAAATCAATGATC TGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCAAGAGGTAGGTGGTAATGGTATTAGTCCTTCAATAGCATCAGAA TGGGTTTCAAATTCCTTTGTTGGATACTTGCTCTGATCTTACATGTATTGATTGATTTGTCTTTCTTTCCAGTCATTGGC TCGGATGAATAAAAAGGACTCGTGGCTTTTCTGGTGGACCCTTTACCTTACGGTAAGAGAATATGGATTGATTACAGCAT GCAATGACATTCCAGTTTTCATTTAGGTTCTTCTAGTGCAAGAGTTGAAATGTGGGTTTTGGGGAGAGTCAATAAGGGGG AAATTATGGCCTGATCAGACTTATTCAGATGGTGCATCTGTTGTGTAGGAGTAAATTATTGTTACGTCTATGATCCATGT GGTCAAGATTCAACAAGATTTTACATTAGATATCGGCCACCTAACACAACTCTACTCTTTTCTCTGGGCTTGGAGCCGGT TATTTAATGGATATAGGCAGAGCAATGATATTGCTTAGTACGTAGTAGTAAATAGTACACTAATTGGTTGTAATGTTCAA AATAAGTGATAAGTTCTCTACAGGTTTTGGATTTGCATGGAGAACAATGGTTAATGAAATAACATGGCACAGTTATTTCA CTGCTTGTAGGTTAGATACCACCCCCACACTTGTCTTAAAAAAAGCATAATCATTATTCTTTGGTACTACAGGCAATTTT ATGGATCCTGCTTGGAATATTCTCGCTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTTGGAGTTTGTTTGACACTCA GCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGGTGCGCAACTTTATTGATGATATTCTTAAAAATTAAACCAT GTATATTCTGATATGCAAAATTGGTTTGGGTGTAGCATTTCATATTGGAGTTTTGGAAACATTGTGTAGCACCTGTTTCT CATATCATTTTGAATGCAAACTATAATTTGTTGTATTCTGCCCACCATAGTAGTCAATCCCGGATAGCGGCGCGTAGCGG CCGGCCCCAAAAGTGGGATAGCGTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTATGTAATTTTATATCA TTAATAGTTTAATACTAAATACATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTCATAATAGAAA TAAAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAATTTGCAAATCT GAATGAAGAATGAAGCTTAATTCTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCATAAAAAGGTTC CCCAACGATTTAAAACGAAGGGGCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCTATTGGCCGCG ATCTGCCGCTATTTTGGCCGCTATTCGCGCCGCTATGACCGCTATTGTGAAGTTGGCCGCTATTTCATCTCAATAGCGGC AGGGAGCCGCTCCGCTACGCCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGCTGCCCACTTAATGTAAAGTTG TAGGCATATGAAGATACTGACTACTAAATAAGGGGTTTAGAGTTCATTGTGTAAGTGAAATGGCAGTTTATGATTTTATT TGTCAATTCCTGTGTGGCAAAGGATTCTATGAGGCCTCAGCACGAGCAATTATATCACTGAAGCTTAATATCTTATGTTA GGCCATGATCTTATTCTTAGGTTCCTAGGTGCTTTGGAGGCTAATATATTGTATACCAATGTAGGATCCTGTGATCGTTG ATTCTTTGTTCCTGCATTCTTGTATTTGTGCCTGCAACACATCCATTGGGCTTAAGTCGGTGAACATTTGTCTTTATGAA AACCATAAGGATATCCTCAATTTATACTCCCACCAAATTGGAAGTTATTATTGATATTCCTGTTGTTATAGTAGTAGTAG AAATAGTTTTGGTGGAATTGGTTAAGTAACAAGAGAAGAGACATTATATGAAAATGTAAATGGTTTGCTGAAGGGTCAAC TGGTTAGAGATTCCCAAATATCAATTTAGTTTTAGACCGGTTACCGTGTATTATCAATAGTTGGTTAGAACAATTAGTTT GTGAGAGAGGTTGGAAATGACAGGCGATTTAGCTTAATATGAGTATGGATAGAAGGGAAAGGATGTTGCTAGTTTTTTAA CAGAGCAGTGGCTCAGTTATAGAAGGAGAAAGGAGAGATTTTGCTCCTACTCTGTTTATTTTTCAGTTATACAAAAAATG AATAAACTCATTATTTGCTCTATACCCATTGTGGTTTTCTAATACAACTCCTTGCAGTAGGCCAGTAGCACCCTGTTTTT GTGAGATTGGGAACTTTGGGACATCTTTTTTTTTGTTTGTCTTATTAATATTTTCTTCATTGCATCTTGTCTAATTGATC CTGCAATATATGTGAAACGTACATGTAGGAGTTTCCTAAGCTCATAACATCTTGAGACTAGTATTTCTACATAACAGGAA GGATTTCCCTTTGTCCCCCACATGATTTACCATTTCATCTTAACATGCTTTTCAATGGAAAAGCTTGCATTGGCTAAAAC TGTTTGGTTGTTTTTCAGATGCTAAGAAGCAACTTCAACAATTTGCCTCTCAGACAATTGCCACTCGGTTCTCATCTACC CTACAGTCAGCATTCAGTGTCGTCTAA
CDS sequence (LotjaGi5g1v0232300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTAAAGGGGTTATGTTTTTGTGTATTGCAGGCTGCATCGTTGGCATTTTACATTCTCTCAACGCTCTTTATTGC TAACTTTGTCATCATCTTCGTGGTCACCGTGCTTCTCGCGGCGCTTGATTTTTGGGTGGTTAAGAATGTGAGTGGCCGGA TTTTAGTTGGGTTGAGGTGGTGGAATGAAATCAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCAAGAG TCATTGGCTCGGATGAATAAAAAGGACTCGTGGCTTTTCTGGTGGACCCTTTACCTTACGGCAATTTTATGGATCCTGCT TGGAATATTCTCGCTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTTGGAGTTTGTTTGACACTCAGCATTGCAAATA TTGTTGGTTTTACCAAATGCAAAAAAGATGCTAAGAAGCAACTTCAACAATTTGCCTCTCAGACAATTGCCACTCGGTTC TCATCTACCCTACAGTCAGCATTCAGTGTCGTCTAA
Protein sequence (LotjaGi5g1v0232300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVKGLCFCVLQAASLAFYILSTLFIANFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFECLDQE SLARMNKKDSWLFWWTLYLTAILWILLGIFSLIRLQADYLLVVGVCLTLSIANIVGFTKCKKDAKKQLQQFASQTIATRF SSTLQSAFSVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 17 | 17 | - | – | |
Phobius | 1 | 4 | 4 | - | – | |
Phobius | 5 | 12 | 8 | - | – | |
Pfam | 6 | 140 | 135 | 1.2E-43 | ||
PANTHER | 8 | 170 | 163 | 4.5E-88 | ||
PANTHER | 8 | 170 | 163 | 4.5E-88 | – | |
Phobius | 13 | 17 | 5 | - | – | |
Phobius | 18 | 26 | 9 | - | – | |
TMHMM | 20 | 42 | 23 | - | – | |
Phobius | 27 | 47 | 21 | - | – | |
Phobius | 48 | 90 | 43 | - | – | |
TMHMM | 91 | 113 | 23 | - | – | |
Phobius | 91 | 113 | 23 | - | – | |
Phobius | 114 | 118 | 5 | - | – | |
TMHMM | 118 | 137 | 20 | - | – | |
Phobius | 119 | 138 | 20 | - | – | |
Phobius | 139 | 171 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0232300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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