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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0233100 |
| Transcript ID | LotjaGi5g1v0233100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 1; TAIR: AT1G09460.1 Carbohydrate-binding X8 domain superfamily protein; Swiss-Prot: sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3; TrEMBL-Plants: tr|G7IAB2|G7IAB2_MEDTR Carbohydrate-binding X8 domain protein; Found in the gene: LotjaGi5g1v0233100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54057461..54060479) extracted from Lotus japonicus Gifu genome v1.2.
GTAACACCTAAATTCTAATCCAACATATTTTTTTTATCATTATAAGTAGGTCCCTTTCTTTTTTGACACCTTTGTTTTCC CTTCTCACTCATCACCTTTATCTTCAACATACCCCCGCCCATTTGGGCTTTTTATTCAAGCCTCATGCCATGTCTTTAGA TCACTACTCCTATATGAATCACACTGATTTTTTTTGACAAAAACACAATCACTCTAATTCCAACAAGCTCATTCTATGTT CCAGTTACACTCTCTGATAATGGCCAAGGGAGCTTCTTTGTGCCTCTTGTACCTCTCTTTTCTCATCATCTCATGTTCTG GTAAGTTGCTGAAACTGATATTATAGTACTGATAACTTGTTTCAACTAACTTTTTTTCATCGCAATCAATTCTGAAACTT TGAAACTACTTATAGAAGCTTCTTCGCAGAATATTGATTTTGTCTTCTGAATCAATTGTAGAAGAATTTTTAAATATGCA CTGAGTAATCATATTTGTGCCTGTGACTAATGATGATCAAAATGTTGTCTTTAATAGTTTCTGGACTACCCAAATTTGTG TTCTTGTAGCAGAATCAGTTGTGGCTGCTTAAACTCTATAGGATAATCAATTTGAACTAGTTCAGATTCTAATCCTCTTC TTTCTCTTTTTCAGGAGACACTTCAACTTCTACATCTTCTGGAACCATATCACTCCTTCACCAAAACGAGGTTTCCCCAT CTCAAGTTAGTGAAAGGGTGTCCAAATATCTAGAAGCAAGAGAAAGAATGGCTGCATTGTATGCAGAAATGCACACAACA GAAGATTTTGCACTGAAAGAGCTCAAAAGGGAAGAGATATCAAGAAATTTCCTTAGAAGAAGAACCTTAGATGACACAAA CAACCCAACAAACACAGTTTTCCCCACAAATCCAACTACACCAATCATCACACCCCCAGATAATACACCAACCATCATTG CAGTTCCTTCCACAAACCCTGTCACAATTTCCCCCACAAATCCAGCTGCAGTTCCTGCAACAGTTACTCCAACCACAAAT TTACCTTCACCTCCCACAAATCCAACATTTTCACCAGTTCCAGTAACCAATCCAGCTACAACCCCCACAACAGTTCCAGT AGCACCACCAGTAACACCAACAACTCCCACAACAGTTCCAGGAGCACCACCAGTAACACCTTCTTTTCCACCTCCATCAG GAAGTGTTCCTGTCATAAACCCTCAACCTCCTCCTGCAAACACAAATAACCCTCCTTCCACTCAGGGGCAGAGTTGGTGT GTTGCAAAGACAGGAGCTCCACAAGCTTCCCTTCAAGCAGCCCTGGACTATGCTTGTGGAAAGGGTGCAGATTGTGCTGC TTTACAACAGGGTGGAAGTTGTTACAGTCCTGTTACTTTGCAAAACCATGCTTCTTATGCCTTCAACAGCTACTATCAGA AGAATCCAGCTCCAACAAGTTGTGATTTTGGAGGGGCTGCCACCTTAGTTAACACCAACCCAAGTAAGATCTTAACAGTT TAATAACCCTTTTGTTTTGCTTCCTTTAATTGATGACAATTTTTTAAAGGAATCTTCTGAATTTTGAACAGGTTCAGGAT CTTGCATTTTCCCATCATCATCATCAGCATCAGCAACAACGCCAATGACACCATCTCTAACACCACCTACACAATCAACT CCTCTGAGTCCAACAATAGGTGCACCATCAACTCCTAAATCACCTACTCCACTATCAATTCCTACAGCTCCACCAACAAC ACCCTCAGGATCCAGCACTTTTGGGTAAGTGAGATAGAAACATTTTGTTTTCAATAATTTTAAGTGCATGTTCAGATACA ATGGGAAACCACAATGAGACAAAAATCACGATGGACTATCTTAAAAGCCAAGGGAAGTTGCTTGTGATTTTGGTTTCACC GTAGTTTTTCATTGTGTGCCCAAACATGCAATGAGACAACAGTAAGCATACTGATCATGGTCCTGTATAATGCTACTTTT TGCAGCTATGGCACTCCACCTTCAGTGTTGAATTCAAGCAACCCAGCCTCAGGTACCATGCCAGATTTTGGGACTGATAG CCCTCCCATTGTGAATACCACATCAACCTCACATTCCATTGGTCTGAAACCTTTCACTGGCTGCATTGTTCTGATGTTAT CATTTGTCGCTGCGAGACTCAGTATGTGCCAGTAGAGTTCACAAACAAGTTTATAGAAAGACAGTGGACTGGTCTTGCAA CATTGCATGCAGTATTAAGGTGAAGAAAAGGTGCATGATGGTAGCAGCTTCATCAATGTGCTAAACTTTAATTTAGGTGA AGATGAAAACCTGTAGAATTAGCTGCAAGCTATGGTTTCTAGGTTGCACAACAGACTATGGTCAATATTGGTCATGTAAA TATATTGAGAGCTTAGGTACTTTATATTTTGGTATAGGGCTTAGTAATTTCTTACATTTTGCAGTATGTAGTTCAGGTAA ATTGGTCAGGGTTGTTTTCACAACCGGTTTGCATAAATGGGAGGATTGCTATTGATAAAAAAAACTTAATCCATTTCATA TTAATGAAAATAGTCCATTATGATTGATGAGGCTCTATTTAAATTTAGATGGATAAAAATTGTGTAACGGTTCCTCCTAG ATTGGTTTGAACATTTGGATAAAATGCTCCAACTGTCCAACATGAGGGAAAATGTTATTGTTTGTAAACCACAAGAAACA GTGATTGAACCAAAACATTAGAGATTCAGAGAACAAAACCAAACTACACACAGACTGAGGCCAGTGCCTCTGTATGCACA AGAAGACACCTACGTTCATTTTTTATACATTGGATGCCAATTCTAACGTTAGATCTCACTCAATTGCAAAAGACAACAAT GAGAAAAGCAACGGCTATCAGCCAAGTGTACCAAATATCTTGACTTTTTAATGTCGGCATGTGATACTTTTGCTAAAGAT CCAAAGCATAGTCAATCATACTCAAGCCACATCATGAAGAGGCTGTCGTTTCATGATTT
CDS sequence (LotjaGi5g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCAGTTACACTCTCTGATAATGGCCAAGGGAGCTTCTTTGTGCCTCTTGTACCTCTCTTTTCTCATCATCTCATG TTCTGGAGACACTTCAACTTCTACATCTTCTGGAACCATATCACTCCTTCACCAAAACGAGGTTTCCCCATCTCAAGTTA GTGAAAGGGTGTCCAAATATCTAGAAGCAAGAGAAAGAATGGCTGCATTGTATGCAGAAATGCACACAACAGAAGATTTT GCACTGAAAGAGCTCAAAAGGGAAGAGATATCAAGAAATTTCCTTAGAAGAAGAACCTTAGATGACACAAACAACCCAAC AAACACAGTTTTCCCCACAAATCCAACTACACCAATCATCACACCCCCAGATAATACACCAACCATCATTGCAGTTCCTT CCACAAACCCTGTCACAATTTCCCCCACAAATCCAGCTGCAGTTCCTGCAACAGTTACTCCAACCACAAATTTACCTTCA CCTCCCACAAATCCAACATTTTCACCAGTTCCAGTAACCAATCCAGCTACAACCCCCACAACAGTTCCAGTAGCACCACC AGTAACACCAACAACTCCCACAACAGTTCCAGGAGCACCACCAGTAACACCTTCTTTTCCACCTCCATCAGGAAGTGTTC CTGTCATAAACCCTCAACCTCCTCCTGCAAACACAAATAACCCTCCTTCCACTCAGGGGCAGAGTTGGTGTGTTGCAAAG ACAGGAGCTCCACAAGCTTCCCTTCAAGCAGCCCTGGACTATGCTTGTGGAAAGGGTGCAGATTGTGCTGCTTTACAACA GGGTGGAAGTTGTTACAGTCCTGTTACTTTGCAAAACCATGCTTCTTATGCCTTCAACAGCTACTATCAGAAGAATCCAG CTCCAACAAGTTGTGATTTTGGAGGGGCTGCCACCTTAGTTAACACCAACCCAAGTTCAGGATCTTGCATTTTCCCATCA TCATCATCAGCATCAGCAACAACGCCAATGACACCATCTCTAACACCACCTACACAATCAACTCCTCTGAGTCCAACAAT AGGTGCACCATCAACTCCTAAATCACCTACTCCACTATCAATTCCTACAGCTCCACCAACAACACCCTCAGGATCCAGCA CTTTTGGCTATGGCACTCCACCTTCAGTGTTGAATTCAAGCAACCCAGCCTCAGGTACCATGCCAGATTTTGGGACTGAT AGCCCTCCCATTGTGAATACCACATCAACCTCACATTCCATTGGTCTGAAACCTTTCACTGGCTGCATTGTTCTGATGTT ATCATTTGTCGCTGCGAGACTCAGTATGTGCCAGTAG
Protein sequence (LotjaGi5g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFQLHSLIMAKGASLCLLYLSFLIISCSGDTSTSTSSGTISLLHQNEVSPSQVSERVSKYLEARERMAALYAEMHTTEDF ALKELKREEISRNFLRRRTLDDTNNPTNTVFPTNPTTPIITPPDNTPTIIAVPSTNPVTISPTNPAAVPATVTPTTNLPS PPTNPTFSPVPVTNPATTPTTVPVAPPVTPTTPTTVPGAPPVTPSFPPPSGSVPVINPQPPPANTNNPPSTQGQSWCVAK TGAPQASLQAALDYACGKGADCAALQQGGSCYSPVTLQNHASYAFNSYYQKNPAPTSCDFGGAATLVNTNPSSGSCIFPS SSSASATTPMTPSLTPPTQSTPLSPTIGAPSTPKSPTPLSIPTAPPTTPSGSSTFGYGTPPSVLNSSNPASGTMPDFGTD SPPIVNTTSTSHSIGLKPFTGCIVLMLSFVAARLSMCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 11 | 390 | 380 | 1.0E-70 | – | |
| PANTHER | 11 | 390 | 380 | 1.0E-70 | – | |
| Phobius | 13 | 25 | 13 | - | – | |
| Phobius | 26 | 29 | 4 | - | – | |
| Phobius | 30 | 417 | 388 | - | – | |
| MobiDBLite | 100 | 124 | 25 | - | – | |
| MobiDBLite | 100 | 115 | 16 | - | – | |
| PRINTS | 103 | 115 | 13 | 3.3E-9 | – | |
| PRINTS | 115 | 136 | 22 | 3.3E-9 | – | |
| PRINTS | 138 | 154 | 17 | 3.3E-9 | – | |
| PRINTS | 158 | 175 | 18 | 3.3E-9 | – | |
| PRINTS | 179 | 204 | 26 | 3.3E-9 | – | |
| SMART | 235 | 318 | 84 | 5.8E-47 | ||
| Pfam | 236 | 305 | 70 | 1.8E-21 | ||
| MobiDBLite | 319 | 396 | 78 | - | – | |
| MobiDBLite | 319 | 334 | 16 | - | – | |
| MobiDBLite | 349 | 365 | 17 | - | – | |
| MobiDBLite | 366 | 396 | 31 | - | – | |
| Phobius | 418 | 436 | 19 | - | – | |
| Phobius | 437 | 438 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0233100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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