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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0235800 |
Transcript ID | LotjaGi5g1v0235800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mannan endo-1,4-beta-mannosidase-like protein; TAIR: AT5G66460.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q8L5J1|MAN4_SOLLC Mannan endo-1,4-beta-mannosidase 4; TrEMBL-Plants: tr|I3SU88|I3SU88_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0235800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54401077..54404496) extracted from Lotus japonicus Gifu genome v1.2.
AGAGGGGTTACACTTTGGGTTATTGTGTTTCAACTTTCATGAGCACTGAGCCATGGGGTTCTATAATTTGGTTTCCACAG CTTTTATAGTGTCCTTGGTATTTGCTCAACCTGGGAATTGCAAGGTTGGTGATGGTGTTACTAGTAATAATTTCATTCAA CGAAAGGGCACCCAGTTTATTCTAAATGGGAAGCCACACTACGTGAACGGGTTCAATGCCTTTTGGTTTTTGTACATGGC ATCTGATCCATCTACCAAATCCAAGGTCACTTCAACTTTCCAACAAGCTTCCCAACATGGTTTAAATTTGGCAAGAACTA ATGCCTTCAGCGATGGAGTTTATAGAGCCCTTCAAAAATCTCCAGGATCTTATGAAGAAAGTGTCTTTAGGGTACTTTAT CTTAATTCCCTCTCATCTAAGTTTCTATTGGGGCAATATCACGGTCCAGCCATAAACCTTATTTTTAAAATATTTAGTAA TATGCACTTATGTGTTAAAATTAATTTGTAAAAAAAACATTTATAACTTGTGACCTAAAATTTTCTTAGCCCGCGGCAGA AAAAACCAACTATGTTGTGCAGACACTTCCACTCATTTTTAACATTATTTTCCTATACATGTGAATGGGGTATGGATATC ATAGATAAATATTAAATGCGAAAATCATCATATAAAAAACTCATATGATGCATTGGTATGTCTTAGTCTACAATCAGGCA CATATTTAGTAATTACTATTGACTTACCATTTGAGATTTCTTGGTGATTTTTGCATTGAATTGCAAGTGCAGGGACTGGA TTTTGTGGTATCAGAAGCAAGAAAGTATGGGGTAAAACTGATACTGTGCTTGGTGAATAGCTGGAATGACTTTGGAGGCA AAAATAAATATGTGCAATGGGCTAAAGAACGCGGCCAGAATGTCAAAACTGACGATGACTTCTATACACATCCTGTTGTT AAGCAATATTACAAAAACCATATTAAGGTAGCATATTTAGATTGATGAATCAAAGCCACTTATCCTAATGATTTGAGTCA TAATTAAGTTGCAGGTTAATTTGATTCCTCAACAAAAATTATTGAAGGATTCATTACCATGATGTATTTGCAGGCTGTTT TGACAAGAAAGAACACTATAACTGGACTGGTATATAAGGATGATCCTACCATTTTCGCGTGGGAGCTCATGAATGAACCT CGTTCCAACTCCTCCTCAGGAAAAATGATTCAGGTCCATTCCTTTCCTACTTGTGAGTCGTGAGTGCTTAGAATTGATTC TCCACAAACTAAATTATTGTTGTGTTTGAATGTTTTCTTTCATAATTGTTTATAGCTCCAAAATCAATTTTGAGATTAAG TTATACATTCTACTTTTTTGACATAATTAATTGTGAGATTTCAAGACTAAATTTCACATCATATTACCCTTAAAACTTTA CATTTCTTATAAATGTATTCTAACATAAACTACTTAATTTACAACTTCATTTTACCATTATCACTTCTATCAACTATCAA TTCTGATAGTACTGTTTATATATCTCTCACCTTATAGAAATGCAACCATGATGAGCCTAACATTCACGAATTATTATAGG ATTGGGTTAGTGAGATGGCAGCCTATGTCAAATCTATTGACAGCAACCATTTGCTAGAAATTGGTCTTGAAGGGTTCTAC GGTGAATCAATGCCACAAAAGAAGCAGTTCAATCCCGGGGGATTCCAAGGTGGTGGAACTGATTTCATCTCCAACAACCA AGTTCCTCAAATCGATTTTGCCACCATCCATTTATACCCTGATCAATGGTAAAATTCATATAAATTCGCAGCTATTTACA TTGACTAATAACCATAGGAATATGATGTATTCTCCAAAACTTTTCGGCCGAAACTTTTGATGGAGTCGGAGGATGTTTCA CTTTATCCTTTCGGAGGATAAAGCAACGCTCTTAACCATATTCACTCTTTTTTTTTTTCAATTGGGATTATGGATGCAGG TTAGCAGGCTCAGACGAGGCAGCCCAACAAGCATTTGTTGATAGATGGGTCCAAGCACATATCCAGGACTCAAATGATGT TTTAAAAAAGCCTATTCTTCTAGCAGAGTTTGGAAGGTCATCAAAGTTACCAGGATACACTGTAGAGAAAAGAAATGGTT ACTTTGTGAAACTATACAATTTCATATATGGTAGTGCTAGAAGTGGAGGCTCATGTGCAGGTGGGCTTTTCTGGCAGCTC GAGTCTACAGGAATGGAAAACTTTAGTGATGGCTATGAAGTCATTTTCGAGGAAAGTCCTTCAACAGCCGATATCATCAA ACAACAATCCAGGAAAATATCAAGTCTCGAATAGCCTGATGCCAGAAAAAGTTCTCATATCCATCACTAATCGTGTAATT TAAATAATGATGACTGTCTCAGTGCATCCTGTTTCTCCTGTGCACTTGAGCAGACTAATATCAGTTTTTAATTATGTATA CTTAAAAGTGATTTAGTAAATTCAAGGTATAGGTGGCCACAATATATGCTCCCAATCTATTAACAGGAAAAAATCATTAA CTAAATCCATGGGTAGCAATGGGTGCACGTGCAGCAAGTTTTTACGCCCAAGTGCAGGCAATTTGACCACCCCTACTCAT ACCCAAGTTGATTGGCAGAATCATAACCTAAAACAGTTCCATCGTTCTATATATGAATGGATTTGCAGCAAGTAATCAAA GACAGGGAGAACCTATTAATTAATCTAATGAACTACACCTATAGATCATATGATCAAATCTCCCTGTAATAGGAACACTA TCTACTAGTCCCGGTACTAAAAACTTAGCAATCAGATGTTGCTCCTTCTGTAGTTATGTACCATTTTGTACCCAATGTAA GAGCCAGCTTCTTGCAATATGCAGGGTAAAAAGAAAGATGAGGATACGCCGTTTCTTTACCTATGTGCCAGCACTACACT AACCACAAAGAGTCTGCTACACTTAAGGGCATTGCACGGTCAGGGGGAGGGGAAGGACAGGATGTAGGTAACAAATTGTA ACAGCAAGTGCCAACTGTACATTGACTAATTATAAGCATTGCAATTTTATTTATCAATTCTAAGATTGTTGCATAGATGA CCAAGCTCAGGTCTTCCATCCATCCAAGCAGCAAATTCCATATTGGAAGGAGAGGTGCAGTAAAGATAAGATCTGAATGT GATAAGGAAAAAATACCGCCTGCAGATGAGGGGGAAAACATAAATGGCTACACAACAAAATAATATGTCCAATATTCACA AGCAATAAATATAAAAGCCACTACTCAGAGACAATATAAGTATATATGCATATGGTAAAATGTTTTATAAAATGAAATTG AAAATCCACATCTAAAGTTTGGGTCAAGCTCATTATGCTCGAACACTTTATATTTAGCCA
CDS sequence (LotjaGi5g1v0235800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTCTATAATTTGGTTTCCACAGCTTTTATAGTGTCCTTGGTATTTGCTCAACCTGGGAATTGCAAGGTTGGTGA TGGTGTTACTAGTAATAATTTCATTCAACGAAAGGGCACCCAGTTTATTCTAAATGGGAAGCCACACTACGTGAACGGGT TCAATGCCTTTTGGTTTTTGTACATGGCATCTGATCCATCTACCAAATCCAAGGTCACTTCAACTTTCCAACAAGCTTCC CAACATGGTTTAAATTTGGCAAGAACTAATGCCTTCAGCGATGGAGTTTATAGAGCCCTTCAAAAATCTCCAGGATCTTA TGAAGAAAGTGTCTTTAGGGGACTGGATTTTGTGGTATCAGAAGCAAGAAAGTATGGGGTAAAACTGATACTGTGCTTGG TGAATAGCTGGAATGACTTTGGAGGCAAAAATAAATATGTGCAATGGGCTAAAGAACGCGGCCAGAATGTCAAAACTGAC GATGACTTCTATACACATCCTGTTGTTAAGCAATATTACAAAAACCATATTAAGGCTGTTTTGACAAGAAAGAACACTAT AACTGGACTGGTATATAAGGATGATCCTACCATTTTCGCGTGGGAGCTCATGAATGAACCTCGTTCCAACTCCTCCTCAG GAAAAATGATTCAGGATTGGGTTAGTGAGATGGCAGCCTATGTCAAATCTATTGACAGCAACCATTTGCTAGAAATTGGT CTTGAAGGGTTCTACGGTGAATCAATGCCACAAAAGAAGCAGTTCAATCCCGGGGGATTCCAAGGTGGTGGAACTGATTT CATCTCCAACAACCAAGTTCCTCAAATCGATTTTGCCACCATCCATTTATACCCTGATCAATGGTTAGCAGGCTCAGACG AGGCAGCCCAACAAGCATTTGTTGATAGATGGGTCCAAGCACATATCCAGGACTCAAATGATGTTTTAAAAAAGCCTATT CTTCTAGCAGAGTTTGGAAGGTCATCAAAGTTACCAGGATACACTGTAGAGAAAAGAAATGGTTACTTTGTGAAACTATA CAATTTCATATATGGTAGTGCTAGAAGTGGAGGCTCATGTGCAGGTGGGCTTTTCTGGCAGCTCGAGTCTACAGGAATGG AAAACTTTAGTGATGGCTATGAAGTCATTTTCGAGGAAAGTCCTTCAACAGCCGATATCATCAAACAACAATCCAGGAAA ATATCAAGTCTCGAATAG
Protein sequence (LotjaGi5g1v0235800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFYNLVSTAFIVSLVFAQPGNCKVGDGVTSNNFIQRKGTQFILNGKPHYVNGFNAFWFLYMASDPSTKSKVTSTFQQAS QHGLNLARTNAFSDGVYRALQKSPGSYEESVFRGLDFVVSEARKYGVKLILCLVNSWNDFGGKNKYVQWAKERGQNVKTD DDFYTHPVVKQYYKNHIKAVLTRKNTITGLVYKDDPTIFAWELMNEPRSNSSSGKMIQDWVSEMAAYVKSIDSNHLLEIG LEGFYGESMPQKKQFNPGGFQGGGTDFISNNQVPQIDFATIHLYPDQWLAGSDEAAQQAFVDRWVQAHIQDSNDVLKKPI LLAEFGRSSKLPGYTVEKRNGYFVKLYNFIYGSARSGGSCAGGLFWQLESTGMENFSDGYEVIFEESPSTADIIKQQSRK ISSLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 5 | 5 | - | – | |
SignalP_EUK | 1 | 18 | 18 | - | – | |
Phobius | 1 | 18 | 18 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
Phobius | 6 | 13 | 8 | - | – | |
PANTHER | 12 | 404 | 393 | 2.4E-188 | – | |
PANTHER | 12 | 404 | 393 | 2.4E-188 | – | |
Phobius | 14 | 18 | 5 | - | – | |
Phobius | 19 | 405 | 387 | - | – | |
Gene3D | 30 | 405 | 376 | 6.5E-137 | – | |
SUPERFAMILY | 34 | 395 | 362 | 1.06E-79 | ||
Pfam | 45 | 330 | 286 | 6.9E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0235800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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