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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0236500 |
Transcript ID | LotjaGi5g1v0236500.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Haloacid dehalogenase-like hydrolase; TAIR: AT3G62040.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q09893|YAI5_SCHPO Uncharacterized protein C24B11.05; TrEMBL-Plants: tr|I1LAV5|I1LAV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0236500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54427913..54430073) extracted from Lotus japonicus Gifu genome v1.2.
TACAATTAAACACCCTAAGGTCTTTGTTAGTCTTGACAATATTTCATTTTAAGTTTGTGTTTATACTTTATATGGTCCAA ATTGGTAGGCATGTTTCATGCATTGAATTTGTCATAAGACTCATATATAACCCATTAAATGACTGATACTTACTTTTTTG ATTCAGGCAGAGGTTTATTGGAGATTATTAGGCAGTAAATTCTAGATTTCTTCCCTGTGCAAGTGCTTCCTACTTGTTTT GTGAATTCCGTGATCACCGGGTATGTTTTTCTTGGTGTGTTAACATCTTCAAGTTTGGTATTTTTGCTGAAACTAGTTTG TCAGGTGTGTTTCAGCTGTTTTTTCTGATGCTGGCATACTGGTTGGCCATATTCTATGATCATCTAACTCTAAATATGAT GTGATTAAGTGCATGTTTGGATATATAGTGAAAATCAATGTGAGACAAAATCATGGTGGACAGAAGCATCTTTACTTAGT TGTTGTGTCTATCACTGTAATTTTTCCTTCATTGTGGTTTTTCATCGTGTATCAAACATGTACTAAGCTATAGATAGGAA TCTCGCACCTAAGGTGAGGAAACTTTTATGTGATTACTGAAATTTATTGCAGTTTCCAAGTTCAAGATGGATGCTCACAG GATTGATGGAGTCAAATACGAGTGCTTGCTTTTTGGTATGATTTGTCTAACCCATGCAGTGAACTCTTATATGCTTCACA AGAGTGTATTATTACCTTTCTGTCTTCTGGTTTAATTTAAACCTCTCCTTCCCCTCATCGTTTCTCTCTTTCCTTTTCAA CCACTTTAAACCTGTTGTATTACTTAAATGATAAAGAGTGAAAAGGAGTGATATAAATTTCTGGTTCCAAATGTTTGTCA CAGATATAGATGACACTCTCTACCCATTGAGCTTAGGTCTCAATTTGGCATGTCGCAAGAACATACAAGGTATAAACATA AAGTACTAAAGCCAGAACATGAAATATTCTGCTGATCAGATAATCTCATATGTGATAGAATAGAATAGAAGTATTCTAGT TAACCAATCTTGTTTACAGAGTATATGTTGGAACACTTGCACATTGAAGAAAGTGAAGTGCCAAAGATGTGCCTGGATTT GTATATTGAACATGGGACAACTATGGCAGGATTGAAGGTATAAAGATTTTGCATTGCACTCAGTTTTCTCTTGTTGATAT TTTCTTATGAAACACTGATTGACAGTCAATGATATTTCTTATTAAGTTTTAGTCTTGATCTCTACCAGGCCCTTGGTTAT GAGTTTGACAATGATGAGTTTCATGCTTATGTGCATGGAAGATTACCATACGAGAAACTGAAGCCAGATTCAGTGTTGAG GAACCTTCTTCTTTCCATGCCTCAGCGTAAAATAGTATGTCAGAAAAAATTCAACATTTGATACTACTAGTATTAGTTTG ATCAATGAAGAGCATTCCATAATATTCAAAGGCTTGAAAATATTCTTTGCAGATATTCACAAACTCAGATCACAAACATG CAGTTGAAGTTCTCAACAGATTGGGCTTGGAAGATTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAATCCTCCCAAC ATAGATGTATCAGATGATAATCATGTAACAGAGAGTGGACGTTTCAACTCCCACACACAAATCCTCTGCAAACCTTCTGT GGAAGCCTTCGAAGCTGCGATTCGGATTGCAAATGTGGATCCTAAGAAAACAGTAAGATTGATTACTTACCTACAAAGTG ACATGGGAATGGGAAGATTACTTCCTTAATTTGACTAGTTAATTTCAAAACTCTCTGAATCAATTCATAATAGTTCTCTT CTATCTTCTGCAGATTTTCTTTGATGACAGTACTCGAAATATTGCAAGTGCAAAGGTAGCTGGACTTCACACTGTTATGG TAAGTTATATTTGCTGTTTATGGATCTTATGTCACAATCTGTGTTTGCTTGTAATGCATGCTAAAAATGAAGTACATACT GATGGCAGGTGGGTCGTTCAGATTTGGTCCCTGGTGCTAACCATGCCCTGAACAGCATTCATAATATCAGAGAAGCATTA CCTGAAATATGGGAGGTTGAAGAAGACAGCCAACAGCAAATGATCCAATCCTTAGCAGTGGAAGCTATAGTCCTTGCATA G
CDS sequence (LotjaGi5g1v0236500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTCACAGGATTGATGGAGTCAAATACGAGTGCTTGCTTTTTGATATAGATGACACTCTCTACCCATTGAGCTT AGGTCTCAATTTGGCATGTCGCAAGAACATACAAGAGTATATGTTGGAACACTTGCACATTGAAGAAAGTGAAGTGCCAA AGATGTGCCTGGATTTGTATATTGAACATGGGACAACTATGGCAGGATTGAAGGCCCTTGGTTATGAGTTTGACAATGAT GAGTTTCATGCTTATGTGCATGGAAGATTACCATACGAGAAACTGAAGCCAGATTCAGTGTTGAGGAACCTTCTTCTTTC CATGCCTCAGCGTAAAATAATATTCACAAACTCAGATCACAAACATGCAGTTGAAGTTCTCAACAGATTGGGCTTGGAAG ATTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAATCCTCCCAACATAGATGTATCAGATGATAATCATGTAACAGAG AGTGGACGTTTCAACTCCCACACACAAATCCTCTGCAAACCTTCTGTGGAAGCCTTCGAAGCTGCGATTCGGATTGCAAA TGTGGATCCTAAGAAAACAGTGGGTCGTTCAGATTTGGTCCCTGGTGCTAACCATGCCCTGAACAGCATTCATAATATCA GAGAAGCATTACCTGAAATATGGGAGGTTGAAGAAGACAGCCAACAGCAAATGATCCAATCCTTAGCAGTGGAAGCTATA GTCCTTGCATAG
Protein sequence (LotjaGi5g1v0236500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAHRIDGVKYECLLFDIDDTLYPLSLGLNLACRKNIQEYMLEHLHIEESEVPKMCLDLYIEHGTTMAGLKALGYEFDND EFHAYVHGRLPYEKLKPDSVLRNLLLSMPQRKIIFTNSDHKHAVEVLNRLGLEDCFEGIICFETLNPPNIDVSDDNHVTE SGRFNSHTQILCKPSVEAFEAAIRIANVDPKKTVGRSDLVPGANHALNSIHNIREALPEIWEVEEDSQQQMIQSLAVEAI VLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 194 | 191 | 3.2E-119 | – | |
PANTHER | 4 | 194 | 191 | 3.2E-119 | – | |
TIGRFAM | 12 | 196 | 185 | 1.7E-61 | ||
Gene3D | 13 | 192 | 180 | 1.2E-38 | ||
SUPERFAMILY | 13 | 206 | 194 | 5.88E-20 | ||
Gene3D | 24 | 93 | 70 | 1.2E-38 | – | |
PANTHER | 194 | 242 | 49 | 3.2E-119 | – | |
PANTHER | 194 | 242 | 49 | 3.2E-119 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0236500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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