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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0237500 |
| Transcript ID | LotjaGi5g1v0237500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT3G62100.1 indole-3-acetic acid inducible 30; Swiss-Prot: sp|Q9M1R4|IAA30_ARATH Auxin-responsive protein IAA30; TrEMBL-Plants: tr|A0A0L9TXV6|A0A0L9TXV6_PHAAN Auxin-induced protein; Found in the gene: LotjaGi5g1v0237500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54568892..54571923) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTTAAAGTAGAAATAGTAGTATCAACTAAAATGCAATAAATGTTTATTACCCTCACTCTTTTATATATTGACACG TTTAGTTGTCGGGTATCATGAGGACATCATAGGTCTACATATTACATGGAAGAAAAAGAGGTAAGGTAGCCAATGGTTGA AGTTGGAAAAAGTCATAGTCATCTTCATAGAATCATAGTACTGTTTTTCTTTCTTTCATTCTTTATTTAAAGACCATAAT GTGGCGGCTTGGTCGGTAACGTAGCTAGCTAGTTCCACTATGGGCAAACCCTCTTCTTCTTCTTCCTCCTCATCTACTAG CAGGAGTAGAAACTCTGTTTTCTCCTCTGCTTCCTCTCTCACACACCAACATACTGAAGGCCTTCAAACAGATCTTAGGC TTGGACTAGGCATTTCCACCACTCAACATGTTGGCTCTTCTACTTCAAGGTTTGTATATATATGTGGATCCAAAACATGA ATTATCACTTCCACAATAAATTTTAAAGTCAGAATCAATTGGGAGAAGCTTTTGTCTTCTGAGTGACAGAATTGACTTTG AGGAAAGAAAAACTAATCCTAATATGCTACTAGTCATGATCATAAAACTACGAACTCTTTTTATGTCACAATGGGTTAAT TTTAAGCTAGTTCTCTTATATTACATATTTGTGTCAATTTCATATTAGGGGGCATAGTTGGCAACCAATGCAACCAGATC TAAGTAGTTCACAAGCTGCTGAAGTGAATGATTGCAGTGATCATAACAGCTTCTTTGTGAAGGTCTACATGGAAGGCATT CCAATTGGAAGAAAACTGAATTTACTAGTTCACAATGGGTACCAAGAACTAGTAAAGACTCTTGAACATATGTTTGACAC TACCATTCTATGTAATGTCTACTGCTATGCCTCCATCATAGTTAATTATCTATGCTTATTGTGTTGCATTTTTGTTAAAA AGTAACAATGTTGTTAATGTGGTTGTGTTATGAACAGGGGGGACTGAGATGGATGGAGTGCAATCAGAGAGGTGCCATGT GCTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGAGATGTTCCTTGGGAGTAAGTTAACTTTTCTCACACCA ACATACATTACCCTTTCTGATTAAGAGCTTATTTGATATCATCATAAAGGCTTAAGCAAGTGTTTAAGAAAACTTATATA AATAGCTTATTACTTATTTACATAAGTTGCTAAAATTAGCTACGCTTAAAAATAAATGCTTATATCTTTTTATAAGATAT CTTGAGCTTGTTTCAGTAAGTTCATCAAATTAGCCTATAAATGAACACTTATGATAAGAACTTATATTGTCTTAACGTAC TAACACTTAATTAACATTCTCTTTCATTTTTAGCATTAATGTCTTGCTATTTTGGACTTTTGGTCATGCAGAATTTTCTT ATCAGCTGTAAAGAGGTTGAAGATCACCCGGGTTGACACATTTGGTTGTTAATTAAGGCATACTAGAGTGAGACTCAATA TTAATGATCACTGATCACCAAGTGATTTATAGAGTATGTTTGGGTATTGGCAATGGCAAGGAAGGAGTGTGGTCAAGAAG GCAAGCACAATCAGTTTTGTGTAGAAATTAAGTGTTAAATAATGATTTTTGCCCCTTAATTTGTATATGATAGCTAGCTA TTCAAATCCGCTTAGGTCAGTTTTGAAATAAAAATGAACTAAAAAGAGTTTGAAGGGTCATATAAGAATTTACTACGTAT TTTCTTTCCATCCTTCCCCTTTCATATACAAGTACTGTAAAAGACATACTTTTTGTGGACGTATCTTCTGGGTTAATGTT CTTTGTAGTTTCTAGAAGTCATCTTTCAGCTTATTTTATTGCCGACACGATTCCCTGATTTCCCCCCATTGTTCATAGCA CACAAAAATATGAGGTAAGGAAAGCAAATTTGAAATGAGGATCTCTCAATTGTAAATTCTATCAAGTTTTCTCAAGTTGA AATTATGCGTTATCTCTCTCTCCATATTCATACTTATTACATAGGTAGACTCTATGAATAATAATGAAGTATATAAACAC ACTTTTTCAATTAACAATGTCAATTCACTTGCGAGAATCAAGATATAGTGTGTAGGAGCTAGAAAGGGACAGATATAAAT AGAATGTGAGTACAATAAAGTAATGTTGCATGCGTACTTCTTGTATATTATCAAATTTCAAATTACAGGAATGTTCAATT TTAGATTATATACAATCGCATGGTCGCTACTAAATGCAAATCCAAGTTCATACAACTTAAGTCTACAAATATTCCAATTG AAGGATGAATATAAATTCTCTTGAAGAAGAGGGATCAAGTTAAATAGTATACATGTTATACCTTCATTTAATGGTATGTT GTCTATTCTATACTTTTGTGATCATCAAGCTACAAAGTATGTAACAGTTTATTCTGAAAGGCATTTTATGGAACACCTAG TGAGTAGTGTACAATTGTGTGCAGAAAATGAAACTCCCAGCTTGAGAAACAGTCACAAACGAAAGGGATAGTTTCAAAAG CAACCAAACTGGATCACCAACCAAATCCTACACCAAGCTTGCATGCAAAACCTGCAATCAGCTTCAGCAATTTGCCATTA AGGATTTGCAATGCGATTCTTAACACGATTGGAGAAAAGAAAAGGATTTTGGAAGCTAATCCCATGCGCATTAGCAGCCA AATTTACTCGCAGCTAATTTGAGAGTTAATTCGCGTATTCCATAGCACTGTTTCGCAGCTAATTCACAGCAACAGCAATT TGACAGCTAAATCAGCAGCCAATTTCAGAGCTAATATACAGCTAGGTATCAGCTAATGTCATAGCTAATGCGCAGGAAGA TCGGAAGGAGAAGAGTTTCTAAAATAACTATCAATATGTAAACAATAGTTAAAGAAATTTGATGTTCCTGAGCCGCAGGA AAAGCAAAATTTTTAGCAGTAAACAATACAGCATTGAACTCTATATTAAGACCCATGTCCTAACAAAGTAAC
CDS sequence (LotjaGi5g1v0237500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAAACCCTCTTCTTCTTCTTCCTCCTCATCTACTAGCAGGAGTAGAAACTCTGTTTTCTCCTCTGCTTCCTCTCT CACACACCAACATACTGAAGGCCTTCAAACAGATCTTAGGCTTGGACTAGGCATTTCCACCACTCAACATGTTGGCTCTT CTACTTCAAGGGGGCATAGTTGGCAACCAATGCAACCAGATCTAAGTAGTTCACAAGCTGCTGAAGTGAATGATTGCAGT GATCATAACAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATTGGAAGAAAACTGAATTTACTAGTTCACAATGG GTACCAAGAACTAGTAAAGACTCTTGAACATATGTTTGACACTACCATTCTATGGGGGACTGAGATGGATGGAGTGCAAT CAGAGAGGTGCCATGTGCTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGAGATGTTCCTTGGGAAATTTTC TTATCAGCTGTAAAGAGGTTGAAGATCACCCGGGTTGACACATTTGGTTGTTAA
Protein sequence (LotjaGi5g1v0237500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKPSSSSSSSSTSRSRNSVFSSASSLTHQHTEGLQTDLRLGLGISTTQHVGSSTSRGHSWQPMQPDLSSSQAAEVNDCS DHNSFFVKVYMEGIPIGRKLNLLVHNGYQELVKTLEHMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEIF LSAVKRLKITRVDTFGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 5 | 177 | 173 | 2.3E-83 | – | |
| PANTHER | 5 | 177 | 173 | 2.3E-83 | ||
| MobiDBLite | 48 | 72 | 25 | - | – | |
| Pfam | 72 | 171 | 100 | 7.7E-28 | ||
| Gene3D | 78 | 176 | 99 | 8.9E-33 | – | |
| SUPERFAMILY | 80 | 169 | 90 | 2.31E-15 | – | |
| ProSiteProfiles | 84 | 174 | 91 | 23.964 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0237500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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