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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0237800 |
| Transcript ID | LotjaGi5g1v0237800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G62110.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0B2NXS5|A0A0B2NXS5_GLYSO Putative polygalacturonase; Found in the gene: LotjaGi5g1v0237800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54584386..54586812) extracted from Lotus japonicus Gifu genome v1.2.
GACATGTTTTTCATGCAGCTGCTGGATGTGTTTCTGGTACTTGCATTGTTCAGTTGTTGCCCATGGACAGTGTGGAGCAG CTCAAGCTGCAATCAGATAAACTTGAAGGAAGTTCGGCCGCATAGTGTTAGTATTACAGAATTTGGAGCAGTTGGCGATG GGATCACTCTCAATACCAAGGCATTTCAGAATGCCATCTTCTATCTCAATTCCTTTTCAGACAAAGGTGGAGCCAAGCTT TTTGTCCCAGCTGGCCGGTGGTTAACCGGAAGTTTTGATCTAATCAGCCACCTCACTTTGTGGTTAGACAAGGATGCTGT AATTCTTGGATCAACGGTAAGCTGCTATTTGTAAATAATATGGTTAAATGCCAGGAATAGAAAGTTTAATATAGCTGCAA AATGTGGTTGTTCCCCGGTTTGTCTGCAATTTAGTGCATGTTTAAATACACAATACATTTTCACGTTGGAAGGGGGTAGA AGTTATTCTGGAAGGTTTAAACGTGATTTCAAACATGCTATTAGTTATTACATATTAGAATGTCACTTTTAGCATGGATA TAATGTTCCTATATGTTTGTTATGCATATTAGTCAATAAAGCAGTGTATTACAGTTAACTAGTAATTAATATGTGCAAAC TTTCTGAGCTATATTTGTCAATTTACCATGCAAGGACTATTTTTGAGTTTTGACTCTAATTTTGACCTTAAGTAATGGAT ATAACTTATGTTTGTATTTTGTTCACTAGCTTAATTCAAACAAATTGGTAGTTTAATCTGTTCAGACCTTGTGGTCTCTA AATTATGATCTGTAGTGTGTGAAAAAAATACCATACTGTGCTTGTTACAGAACTCTGATGATTGGCCAGTTGTGGATCCC CTACCATCATATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAGAAGCCTCATTTACGGACGCAATTTGACTGATGT CATTATAACAGGTTTGTGATATCCAATGGAAAATAATCTTCTATAGACATATTTCAATATATTGATGCCATTAGTGTCCC AATGCAGGTAATAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAGCAAATTTGAGAATAAAACATTGGATTATAC ACGTCCTCATCTGGTTGAGTTGATGAATTCAACGGAGGTTCTCATTTCAAACTTAACCTTCTTGAATTCACCATTTTGGA CTATTCATCCTGTATATTGCAGGTTTGTTCCCTTCCAGAAGGATTGAGTGTTTTTATTTTCTTCCTTATTTGCTAAAGTT CATGCGCTTTCATTAGCATGTTAAAACTGTGCAATAGTGAAGCTTCCATGATTAGGGGGAGATTTGAGACTGTTTTTCTC GATGAACAGCCATGTTACAGTTCAGAATGTCACCATCCTTGCTCCTCTTAGTTCACCAAATACTGATGGGATTGATCCAG GTGACTTTTCTCCCTTAGTGTTGAAAATCATACCCTCGCGTGACAGTGCACGAATTTTCAAGATTTAATTTTCAGGAACC CAATGTTTAACCCAGTTTTGGTGTGGTATCAAGTTCTTGTCATTCATTGTTTAAAAGTGAAAGTTTCTTATGGACCAAAA TAAGACAGAATTTTTACATATGTGGAGCAATGTATTCTATGCTAGTTGGGACTTAAAACATGTGTCATTGTCCTTGCTAA TTTTCTTTCCAGACTCATCAGCTTTTCATATATACCTTTCAATTATGTCCAGATTCTTCGGACGATGTATGCATTGAAGA CTGTTATATAAGCACCGGTGATGACCTGATTTCCATCAAAAGTGGATGGGATCAATATGGCATTTCATTTGGTCGACCTA GTACAAACATCGTCATCCGCAGGCTCGTTGGGAAAACTACGAGTGCAGGAATCGCTATCGGAAGTGAGATGTCTGGAGGT GTGTCAGAAGTCCATGCAGAAGATATTTATATTTTTGATTCGCGCAGCGCAATCAGAATTAAGACTTCTCCTGGCAGGGG TGGTTATGTTAGAAATGTCTATATCTCTAACATGACCTTGGCTAATATAGATATTGCTATCAGGTTCACTGGTTTATATG GAGAACATCCAGATGAAGCTTATGACCCGGACGCCCTACCTCTAATTGAAAGAATTACTATCAAGGATGTGATAGGGGAA AATGTCAAACGCGCCGGCCTTATACAGGGCATAAAAGGTTATGACTTTGTCAATATCTGTCTATCCAACATTAGCCTTAA TGTGAGCTCAAAAGTTCCATGGAACTGCTCTGACGTTAAAGGATACTCAGACTTGGTTTCGCCGGAAGTTTGTGAACCTC TCAAAGAGAGAATATTCCCTGAGCATTGGTCAGACTGTTACAAGCTGCCAAACCAGCTAAAGAGTTCAAGTGATAGAAGC AGAGGTGCTTGGTTGCGGTCTTGGTAA
CDS sequence (LotjaGi5g1v0237800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTCATGCAGCTGCTGGATGTGTTTCTGGTACTTGCATTGTTCAGTTGTTGCCCATGGACAGTGTGGAGCAGCTC AAGCTGCAATCAGATAAACTTGAAGGAAGTTCGGCCGCATAGTGTTAGTATTACAGAATTTGGAGCAGTTGGCGATGGGA TCACTCTCAATACCAAGGCATTTCAGAATGCCATCTTCTATCTCAATTCCTTTTCAGACAAAGGTGGAGCCAAGCTTTTT GTCCCAGCTGGCCGGTGGTTAACCGGAAGTTTTGATCTAATCAGCCACCTCACTTTGTGGTTAGACAAGGATGCTGTAAT TCTTGGATCAACGAACTCTGATGATTGGCCAGTTGTGGATCCCCTACCATCATATGGTCGTGGAAGGGAGTTGCCGGGTG GAAGGCATAGAAGCCTCATTTACGGACGCAATTTGACTGATGTCATTATAACAGGTAATAATGGAACTATAGATGGTCAA GGGAGTATCTGGTGGAGCAAATTTGAGAATAAAACATTGGATTATACACGTCCTCATCTGGTTGAGTTGATGAATTCAAC GGAGGTTCTCATTTCAAACTTAACCTTCTTGAATTCACCATTTTGGACTATTCATCCTGTATATTGCAGCCATGTTACAG TTCAGAATGTCACCATCCTTGCTCCTCTTAGTTCACCAAATACTGATGGGATTGATCCAGATTCTTCGGACGATGTATGC ATTGAAGACTGTTATATAAGCACCGGTGATGACCTGATTTCCATCAAAAGTGGATGGGATCAATATGGCATTTCATTTGG TCGACCTAGTACAAACATCGTCATCCGCAGGCTCGTTGGGAAAACTACGAGTGCAGGAATCGCTATCGGAAGTGAGATGT CTGGAGGTGTGTCAGAAGTCCATGCAGAAGATATTTATATTTTTGATTCGCGCAGCGCAATCAGAATTAAGACTTCTCCT GGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGACCTTGGCTAATATAGATATTGCTATCAGGTTCACTGG TTTATATGGAGAACATCCAGATGAAGCTTATGACCCGGACGCCCTACCTCTAATTGAAAGAATTACTATCAAGGATGTGA TAGGGGAAAATGTCAAACGCGCCGGCCTTATACAGGGCATAAAAGGTTATGACTTTGTCAATATCTGTCTATCCAACATT AGCCTTAATGTGAGCTCAAAAGTTCCATGGAACTGCTCTGACGTTAAAGGATACTCAGACTTGGTTTCGCCGGAAGTTTG TGAACCTCTCAAAGAGAGAATATTCCCTGAGCATTGGTCAGACTGTTACAAGCTGCCAAACCAGCTAAAGAGTTCAAGTG ATAGAAGCAGAGGTGCTTGGTTGCGGTCTTGGTAA
Protein sequence (LotjaGi5g1v0237800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFFMQLLDVFLVLALFSCCPWTVWSSSSCNQINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLF VPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGNNGTIDGQ GSIWWSKFENKTLDYTRPHLVELMNSTEVLISNLTFLNSPFWTIHPVYCSHVTVQNVTILAPLSSPNTDGIDPDSSDDVC IEDCYISTGDDLISIKSGWDQYGISFGRPSTNIVIRRLVGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSRSAIRIKTSP GRGGYVRNVYISNMTLANIDIAIRFTGLYGEHPDEAYDPDALPLIERITIKDVIGENVKRAGLIQGIKGYDFVNICLSNI SLNVSSKVPWNCSDVKGYSDLVSPEVCEPLKERIFPEHWSDCYKLPNQLKSSSDRSRGAWLRSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| PANTHER | 5 | 451 | 447 | 8.4E-299 | – | |
| PANTHER | 5 | 451 | 447 | 8.4E-299 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Gene3D | 23 | 420 | 398 | 5.8E-119 | ||
| Phobius | 26 | 464 | 439 | - | – | |
| SUPERFAMILY | 36 | 429 | 394 | 2.39E-107 | ||
| Pfam | 136 | 416 | 281 | 3.5E-41 | ||
| SMART | 209 | 235 | 27 | 540.0 | ||
| SMART | 236 | 268 | 33 | 530.0 | ||
| SMART | 270 | 291 | 22 | 2200.0 | ||
| SMART | 297 | 318 | 22 | 2100.0 | ||
| SMART | 326 | 347 | 22 | 1000.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0237800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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