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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0237900 |
| Transcript ID | LotjaGi5g1v0237900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L7Ae; TAIR: AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q80UU2|RPP38_MOUSE Ribonuclease P protein subunit p38; TrEMBL-Plants: tr|A0A0R4J314|A0A0R4J314_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0237900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54592029..54595028) extracted from Lotus japonicus Gifu genome v1.2.
CTATAGTCAATTACTATGATATATATGAATATATATAATATCAGATTTCAGATAAAAGAAAATGTAGATGCCATAATATT ATTTATTTTTAGATGGGCCATGCTATTTCCCACCTCAAGCCCACATACAGAAATTCATGGGCCGCTAAAGACATCACAAA ACCCTGACCCGCGCGCTATTAAATCTAATATTTCGCTTGAAGCTTTCTGAATTCTGAATCATCGAACGTCCAACTTTATC AATTGCTACAATTTGTAGAATCAATTCTAGTTTAATTAAGGGCGTCTAATCAGAGGATGCCAAGTAGAAGTAGTGCTAAA GCTCCAAAGAAGCAGGGAAACAACTCAAACACAGGAGGAACTGCTTCTCTAGAAAATAAGTATGCATTGTAAATAGTTTC TGGCTTTTATTCATTCTTCTGTTATTAATGTTGTTGTTTTCTTATCATAACATCATTGGTTACTTATCTGCAGTTCCTAT GAAGGAGAACGCCTAACCCATCTGCTCCAATCAATCCGCAGGTAAAATACATGTTGCTTACTTTTTTTAATTAAACTTCC AACATGATTTGCTCTATAATATTGTTGTATGAAACTGAGATGAAGGCCTGAGTCAAAATTTAACAGTTTAGAGTGAACCA GGCTTGTTAATAGGGCGCTATAGCCTACAGTGTAGCGCATTGAGGTCGCTATAGCGCCGCAATAGCACTCGAAATAACGT TTTTTGGGCTTGCCGCTATCCGCCATTAACAACCCTGGAGTGAACTACTGAACTGCCTTATGAAAACAACTGTTAGTTAC ATAGTTAGTTTTGTAGTTAAGCTGGTTTGTTAGATTTCTTAGTATTATGTTAGTGCACACTATCTATGTATAACTTGTTG CTTTGTATCTGAAAACTTCAATTGATGAATGATAGTTAATTTTTCCCTTTATTTTACTGGTTCATTCTCTCTCAAGTCAT CTTCTCAATATTTGTGTTTAATTGTGGAAGTAATCAATAGTACTGCAATTTCTCACCTTATCTTATAAATGATCATTCTA ATGATTAGGGAGACTGAATTGGCAAGACGTTTAGATGGATGTTCGTTGCCAGAAAAGATTTGGTTAAAGGTTTGACTTCG ACTTGGTTTTGGGAACTATGTAACATGTTGATGAGTTTAGTGGAAAGCTTATATAGTCATGTGACCTTTCTGTGGCTCCT TGCAGCAACAATTTTCTATTGGAGTCAATGATGTAACCCGTGTACTTGAGCGCATGGAACCGTGTGCTGAGTTGGAAAGT TCAGCAGAACTCATCCCTTTGATCAGAAGCAATCATAAAGCACCTTCTGTTAAACTTCAGGTTGATTTCTTCTATTCTGC TATGTAGAACATATAAATCTCTGGTTAATAATGTACATAGTACCTGCACGGCTGCACCTATTGTTATTAGTTTTGAACTT CTATGCAAATCATCCAACTTTGCTCCAAAAAAACTAAATTAAATCCTCCAATTTGCTATTTGTCTGATGCTTTAACCTTT ACATGATGCGGCAAATAGCCAAATACTAGTAGGTAGGCATTTTGTTCTTGCTGATCCCTGCAAATAATAGTAGTTGACTG TGCATATGGCGGCCTTATTGTTTTCTCTCACATTGCTCAAACACGATTTATTTTCTTTGTAATAAATAGACAAGTTTTGT ACTTTTGTTATTACTTGGTAGAAGTAGTATATGCCTATATGGCTCTTTTTGGTGTTAGGTTGTGCTTTGTTTTATATAGT CCAAGAGATACATTATTTACATTTTCTGTTATGCAGGCTGTGCTTGTTGCTTCTGACTGTAACCCACGATGGCTAACAAA GCATCTACAAAGTTTGGCTTCATCAAGGAGTGTGCCCCTGATATTTATTAGAGATAATAAAGAAGGTTCTTTGAGATTAG GTGAACTTGTCAAATTGAAAACTGCAGTTGCTATTGGAATTAAGGTGAGGTCCCAGCCTCGCACTAGATTTATAATTTTC TATTATGTTTGGTTCTGTTCTTTTTAGGAAAATTAATCGTTTCTTTTAAAAGTTCTCTCAATTAATTAATAAAAGTCATG GTTTCTGATAAATAGGTTATTCAAACATGTAGTAAAGTGTCCCTCACTTTAGAAGACAAAGTAAATCTCCAAAAACGTTG AATGAGAAATCTTCTTTTAAGATTGTGATCATATACTTGATACAAATCATTTGGAGTAACTACAAATAGCCTCCATCGAT CAAGTTGCATGGGTAATGGATTTCTCCAAAATTTCATTATTACAATCAACTCCCTTATTCAATCTTTATTCAGTCTTACA ATGGAGATTCCTTATTGTAAGAAAATCATACTTAAGAACATTTTACACCATTTCAAAGTTTTATAATGCAATGACAGTAA CTAATAGTAAGAGAACCTGTTGCCTTGTTGGAAATAAACAAGGAGTCCATGTTATTTGACCATGCCTCGGGATGTCTATA TAATATTGGCTTACTTTGGGTTTTTCTATTTTTGGGTTTTTCTTTTTTTCTTAGATTTTAGCTTACTAAGTTATTCATAA TCTTTCAATGAATGCAGGTTAAAGGAAGCGTGATCAATAAAACTGTTGAGGATATTATTCAAGCTGATGCCTGATGGGGC CAAGTTCAGAACCCTGACATAAATGGGGAGAAAGTGTAGATCTAATTTAATCACTTAGTTTAGGTCGATATCCTATTCTT GGCGACGGATTGTAATGGTGTAGTTCTTTAATTTTCAAACTAGGAAGAACAAATGGGGAGAAAGTGTTCTGATTATTCTG ATTGACTGAAACTGAATGGATATAAAGCTATGCATAGAGCCATACATGTTCTCTGCTACTGTTTCATACTTCTGATTACA AATAACTGACTAGCAAAAGTAACAAACATGTAAAGGAGCCTCTTGCATCTTGTATAGGCATGTCCACTAAGAGTTTTTTG AGACAAAGCAATATATCGTGTGAATGAGTTCGTCTTGGAG
CDS sequence (LotjaGi5g1v0237900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAGTAGAAGTAGTGCTAAAGCTCCAAAGAAGCAGGGAAACAACTCAAACACAGGAGGAACTGCTTCTCTAGAAAA TAATTCCTATGAAGGAGAACGCCTAACCCATCTGCTCCAATCAATCCGCAGGGAGACTGAATTGGCAAGACGTTTAGATG GATGTTCGTTGCCAGAAAAGATTTGGTTAAAGCAACAATTTTCTATTGGAGTCAATGATGTAACCCGTGTACTTGAGCGC ATGGAACCGTGTGCTGAGTTGGAAAGTTCAGCAGAACTCATCCCTTTGATCAGAAGCAATCATAAAGCACCTTCTGTTAA ACTTCAGGCTGTGCTTGTTGCTTCTGACTGTAACCCACGATGGCTAACAAAGCATCTACAAAGTTTGGCTTCATCAAGGA GTGTGCCCCTGATATTTATTAGAGATAATAAAGAAGGTTCTTTGAGATTAGGTGAACTTGTCAAATTGAAAACTGCAGTT GCTATTGGAATTAAGGTTAAAGGAAGCGTGATCAATAAAACTGTTGAGGATATTATTCAAGCTGATGCCTGA
Protein sequence (LotjaGi5g1v0237900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSRSSAKAPKKQGNNSNTGGTASLENNSYEGERLTHLLQSIRRETELARRLDGCSLPEKIWLKQQFSIGVNDVTRVLER MEPCAELESSAELIPLIRSNHKAPSVKLQAVLVASDCNPRWLTKHLQSLASSRSVPLIFIRDNKEGSLRLGELVKLKTAV AIGIKVKGSVINKTVEDIIQADA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 11 | 181 | 171 | 6.1E-74 | – | |
| SUPERFAMILY | 34 | 180 | 147 | 4.24E-14 | ||
| Gene3D | 42 | 183 | 142 | 1.1E-28 | ||
| Pfam | 107 | 168 | 62 | 4.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0237900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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