Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004038
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.083s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0049279.1
n.a. RecName: Full=60S ribosomal protein L30gi|2879811|emb|CAA11256.1| ribosomal protein L30 [Lupinus luteus] gi|6094048|sp|O49884.1|RL30_LUPLU chr0 16677869 16679908 +
2 domain predictions
 –
Lj0g3v0120989.1
n.a. PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1| chr0 53884630 53886158 -
2 domain predictions
 –
Lj0g3v0276759.1
n.a. ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] gi|15234319|ref|NP_192088.1| chr0 143609598 143612407 +
2 domain predictions
 –
Lj0g3v0330009.1
n.a. PREDICTED: 60S ribosomal protein L30-like [Glycine max] gi|356536572|ref|XP_003536811.1| chr0 172501772 172504320 -
2 domain predictions
 –
Lj0g3v0333019.1
n.a. PREDICTED: 60S ribosomal protein L30-like [Cicer arietinum] gi|502180636|ref|XP_004516683.1| chr0 174275600 174277329 +
2 domain predictions
 –
Lj1g3v0672680.1
n.a. PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1| chr1 8735998 8738156 -
2 domain predictions
 –
Lj3g3v0014410.1
n.a. PREDICTED: 40S ribosomal protein S12-like [Glycine max] gi|356523334|ref|XP_003530295.1| chr3 297248 298961 -
2 domain predictions
 –
Lj3g3v2168430.2
n.a. PREDICTED: 40S ribosomal protein S12-like [Glycine max] gi|356523334|ref|XP_003530295.1| chr3 26829798 26831887 -
2 domain predictions
 –
Lj4g3v1748320.1
n.a. PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 2-like protein-like [Glycine max] gi|356511577|ref|XP_003524501.1| chr4 25020742 25022571 -
2 domain predictions
 –
Lj4g3v2704660.1
n.a. PREDICTED: 60S ribosomal protein L30-like [Glycine max] gi|356536572|ref|XP_003536811.1| chr4 36402350 36403639 +
2 domain predictions
 –
LotjaGi1g1v0200100.1
n.a. Ribosomal protein l7ae; TAIR: AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3SXG0|I3SXG0_MEDTR Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Found in the gene: LotjaGi1g1v0200100 LjG1.1_chr1 42322470 42325064 -
2 domain predictions
 –
LotjaGi1g1v0525700.1
n.a. 60S ribosomal protein L30; TAIR: AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|O49884|RL30_LUPLU 60S ribosomal protein L30; TrEMBL-Plants: tr|I3S9Q1|I3S9Q1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0525700 LjG1.1_chr1 105258975 105263578 -
2 domain predictions
 –
LotjaGi2g1v0053800.1
n.a. 60S ribosomal protein L30; TAIR: AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|O49884|RL30_LUPLU 60S ribosomal protein L30; TrEMBL-Plants: tr|A0A0B2PLT2|A0A0B2PLT2_GLYSO 60S ribosomal protein L30; Found in the gene: LotjaGi2g1v0053800 LjG1.1_chr2 10665953 10670118 +
2 domain predictions
 –
LotjaGi2g1v0429700.1
n.a. 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 LjG1.1_chr2 92672748 92675564 +
2 domain predictions
 –
LotjaGi2g1v0429700.2
n.a. 60S ribosomal protein L7a; TAIR: AT2G47610.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P49692|RL7A1_ARATH 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 LjG1.1_chr2 92672853 92674852 +
2 domain predictions
 –
LotjaGi3g1v0004600.1
n.a. 40S ribosomal protein S12; TAIR: AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12; TrEMBL-Plants: tr|I3T1V7|I3T1V7_LOTJA 40S ribosomal protein S12; Found in the gene: LotjaGi3g1v0004600 LjG1.1_chr3 599753 603079 -
2 domain predictions
 –
LotjaGi3g1v0004600.2
n.a. 40S ribosomal protein S12; TAIR: AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12; TrEMBL-Plants: tr|I3T1V7|I3T1V7_LOTJA 40S ribosomal protein S12; Found in the gene: LotjaGi3g1v0004600 LjG1.1_chr3 601024 601711 -
2 domain predictions
 –
LotjaGi3g1v0350700.1
n.a. 40S ribosomal protein S12; TAIR: AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12; TrEMBL-Plants: tr|I3SEH4|I3SEH4_LOTJA 40S ribosomal protein S12; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72950656 72951367 -
2 domain predictions
 –
LotjaGi3g1v0525500.1
n.a. 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525500 LjG1.1_chr3 94231458 94233397 +
2 domain predictions
 –
LotjaGi3g1v0525800.1
n.a. 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525800 LjG1.1_chr3 94247003 94251066 +
2 domain predictions
 –
LotjaGi4g1v0259200.1
n.a. H/ACA ribonucleoprotein complex subunit 2-like protein; TAIR: AT5G08180.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein; TrEMBL-Plants: tr|I3T6V7|I3T6V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0259200 LjG1.1_chr4 61467194 61477605 -
2 domain predictions
 –
LotjaGi4g1v0259200.2
n.a. H/ACA ribonucleoprotein complex subunit 2-like protein; TAIR: AT5G08180.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein; TrEMBL-Plants: tr|I3T6V7|I3T6V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0259200 LjG1.1_chr4 61471969 61473450 -
2 domain predictions
 –
LotjaGi4g1v0389100.1
n.a. 60S ribosomal protein L30; TAIR: AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|O49884|RL30_LUPLU 60S ribosomal protein L30; TrEMBL-Plants: tr|A0A0B2PLT2|A0A0B2PLT2_GLYSO 60S ribosomal protein L30; Found in the gene: LotjaGi4g1v0389100 LjG1.1_chr4 76743862 76745707 +
2 domain predictions
 –
LotjaGi5g1v0237900.1
n.a. 50S ribosomal protein L7Ae; TAIR: AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q80UU2|RPP38_MOUSE Ribonuclease P protein subunit p38; TrEMBL-Plants: tr|A0A0R4J314|A0A0R4J314_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0237900 LjG1.1_chr5 54592029 54595028 +
2 domain predictions
 –
LotjaGi6g1v0162200.1
n.a. Ribosomal protein l7ae; TAIR: AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3T354|I3T354_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0162200 LjG1.1_chr6 44610945 44613459 +
2 domain predictions
 –
LotjaGi6g1v0162200.2
n.a. Ribosomal protein l7ae; TAIR: AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3T354|I3T354_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0162200 LjG1.1_chr6 44611050 44612896 +
2 domain predictions
 –