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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029064
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 52 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.726s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0049279.1
n.a. RecName: Full=60S ribosomal protein L30gi|2879811|emb|CAA11256.1| ribosomal protein L30 [Lupinus luteus] gi|6094048|sp|O49884.1|RL30_LUPLU chr0 16677869 16679908 +
3 domain predictions
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Lj0g3v0120989.1
n.a. PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1| chr0 53884630 53886158 -
3 domain predictions
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Lj0g3v0130059.1
n.a. PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] gi|356560043|ref|XP_003548305.1| chr0 58923174 58926166 -
3 domain predictions
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Lj0g3v0276759.1
n.a. ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] gi|15234319|ref|NP_192088.1| chr0 143609598 143612407 +
3 domain predictions
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Lj0g3v0330009.1
n.a. PREDICTED: 60S ribosomal protein L30-like [Glycine max] gi|356536572|ref|XP_003536811.1| chr0 172501772 172504320 -
3 domain predictions
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Lj0g3v0333019.1
n.a. PREDICTED: 60S ribosomal protein L30-like [Cicer arietinum] gi|502180636|ref|XP_004516683.1| chr0 174275600 174277329 +
3 domain predictions
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Lj0g3v0340599.1
n.a. PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera] gi|225460446|ref|XP_002271656.1| chr0 178413447 178415601 +
3 domain predictions
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Lj1g3v0672680.1
n.a. PREDICTED: NHP2-like protein 1-like [Cicer arietinum] gi|502087441|ref|XP_004488534.1| chr1 8735998 8738156 -
3 domain predictions
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Lj1g3v3943750.1
n.a. PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cicer arietinum] gi|502106984|ref|XP_004493119.1| chr1 46036740 46040354 -
3 domain predictions
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Lj1g3v4691650.1
n.a. Pelota-like protein [Medicago truncatula] gi|357510895|ref|XP_003625736.1| chr1 55600510 55601837 +
3 domain predictions
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Lj2g3v0621310.1
n.a. PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] gi|356531058|ref|XP_003534095.1| chr2 8540159 8544802 -
3 domain predictions
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Lj3g3v0014410.1
n.a. PREDICTED: 40S ribosomal protein S12-like [Glycine max] gi|356523334|ref|XP_003530295.1| chr3 297248 298961 -
3 domain predictions
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Lj3g3v2168430.2
n.a. PREDICTED: 40S ribosomal protein S12-like [Glycine max] gi|356523334|ref|XP_003530295.1| chr3 26829798 26831887 -
3 domain predictions
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Lj3g3v3511330.3
n.a. PREDICTED: 60S ribosomal protein L7a-like [Cicer arietinum] gi|502144762|ref|XP_004505741.1| chr3 42666119 42668788 +
2 domain predictions
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Lj4g3v1748320.1
n.a. PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 2-like protein-like [Glycine max] gi|356511577|ref|XP_003524501.1| chr4 25020742 25022571 -
3 domain predictions
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Lj4g3v2704660.1
n.a. PREDICTED: 60S ribosomal protein L30-like [Glycine max] gi|356536572|ref|XP_003536811.1| chr4 36402350 36403639 +
3 domain predictions
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Lj4g3v3043940.1
n.a. TRNA/rRNA methyltransferase family protein [Theobroma cacao] gi|508783395|gb|EOY30651.1| chr4 40665755 40668007 +
3 domain predictions
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Lj5g3v1301220.1
n.a. PREDICTED: protein pelota-like [Glycine max] gi|356535240|ref|XP_003536156.1| chr5 20275040 20280768 -
3 domain predictions
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LotjaGi1g1v0200100.1
n.a. Ribosomal protein l7ae; TAIR: AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3SXG0|I3SXG0_MEDTR Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Found in the gene: LotjaGi1g1v0200100 LjG1.1_chr1 42322470 42325064 -
3 domain predictions
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LotjaGi1g1v0525700.1
n.a. 60S ribosomal protein L30; TAIR: AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|O49884|RL30_LUPLU 60S ribosomal protein L30; TrEMBL-Plants: tr|I3S9Q1|I3S9Q1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0525700 LjG1.1_chr1 105258975 105263578 -
3 domain predictions
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LotjaGi1g1v0637500.1
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 LjG1.1_chr1 119264989 119268241 -
3 domain predictions
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LotjaGi1g1v0637500.2
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 LjG1.1_chr1 119265531 119266867 -
3 domain predictions
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LotjaGi1g1v0637500.3
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 LjG1.1_chr1 119265531 119267121 -
3 domain predictions
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LotjaGi1g1v0637500.4
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 LjG1.1_chr1 119265531 119267123 -
3 domain predictions
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LotjaGi1g1v0683200.1
n.a. Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|G7L4Y7|G7L4Y7_MEDTR Eukaryotic release factor 1 (ERF1) family protein; Found in the gene: LotjaGi1g1v0683200 LjG1.1_chr1 125042990 125044483 -
3 domain predictions
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LotjaGi2g1v0053800.1
n.a. 60S ribosomal protein L30; TAIR: AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|O49884|RL30_LUPLU 60S ribosomal protein L30; TrEMBL-Plants: tr|A0A0B2PLT2|A0A0B2PLT2_GLYSO 60S ribosomal protein L30; Found in the gene: LotjaGi2g1v0053800 LjG1.1_chr2 10665953 10670118 +
3 domain predictions
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LotjaGi2g1v0182000.1
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I1L3W8|I1L3W8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000 LjG1.1_chr2 60459124 60464101 -
3 domain predictions
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LotjaGi2g1v0182000.2
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I1L3W8|I1L3W8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000 LjG1.1_chr2 60461751 60463226 -
3 domain predictions
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LotjaGi2g1v0182000.3
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0R0I9D1|A0A0R0I9D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000 LjG1.1_chr2 60461751 60463357 -
3 domain predictions
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LotjaGi2g1v0218100.1
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT1G12920.1 eukaryotic release factor 1-2; Swiss-Prot: sp|Q9LPV8|ERF1Y_ARATH Eukaryotic peptide chain release factor subunit 1-2; TrEMBL-Plants: tr|F6I3Y5|F6I3Y5_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0218100 LjG1.1_chr2 67277224 67279585 -
3 domain predictions
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LotjaGi2g1v0429700.1
n.a. 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 LjG1.1_chr2 92672748 92675564 +
2 domain predictions
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LotjaGi2g1v0429700.2
n.a. 60S ribosomal protein L7a; TAIR: AT2G47610.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P49692|RL7A1_ARATH 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 LjG1.1_chr2 92672853 92674852 +
2 domain predictions
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LotjaGi3g1v0004600.1
n.a. 40S ribosomal protein S12; TAIR: AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12; TrEMBL-Plants: tr|I3T1V7|I3T1V7_LOTJA 40S ribosomal protein S12; Found in the gene: LotjaGi3g1v0004600 LjG1.1_chr3 599753 603079 -
3 domain predictions
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LotjaGi3g1v0004600.2
n.a. 40S ribosomal protein S12; TAIR: AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12; TrEMBL-Plants: tr|I3T1V7|I3T1V7_LOTJA 40S ribosomal protein S12; Found in the gene: LotjaGi3g1v0004600 LjG1.1_chr3 601024 601711 -
3 domain predictions
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LotjaGi3g1v0350700.1
n.a. 40S ribosomal protein S12; TAIR: AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12; TrEMBL-Plants: tr|I3SEH4|I3SEH4_LOTJA 40S ribosomal protein S12; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72950656 72951367 -
3 domain predictions
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LotjaGi3g1v0525500.1
n.a. 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525500 LjG1.1_chr3 94231458 94233397 +
2 domain predictions
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LotjaGi3g1v0525800.1
n.a. 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0525800 LjG1.1_chr3 94247003 94251066 +
2 domain predictions
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LotjaGi4g1v0173100.1
n.a. rRNA methyltransferase; TAIR: AT4G38020.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA; TrEMBL-Plants: tr|G7LIJ4|G7LIJ4_MEDTR tRNA/rRNA methyltransferase SpoU family protein; Found in the gene: LotjaGi4g1v0173100 LjG1.1_chr4 34629290 34638021 +
3 domain predictions
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LotjaGi4g1v0259200.1
n.a. H/ACA ribonucleoprotein complex subunit 2-like protein; TAIR: AT5G08180.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein; TrEMBL-Plants: tr|I3T6V7|I3T6V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0259200 LjG1.1_chr4 61467194 61477605 -
3 domain predictions
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LotjaGi4g1v0259200.2
n.a. H/ACA ribonucleoprotein complex subunit 2-like protein; TAIR: AT5G08180.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein; TrEMBL-Plants: tr|I3T6V7|I3T6V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0259200 LjG1.1_chr4 61471969 61473450 -
3 domain predictions
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LotjaGi4g1v0389100.1
n.a. 60S ribosomal protein L30; TAIR: AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|O49884|RL30_LUPLU 60S ribosomal protein L30; TrEMBL-Plants: tr|A0A0B2PLT2|A0A0B2PLT2_GLYSO 60S ribosomal protein L30; Found in the gene: LotjaGi4g1v0389100 LjG1.1_chr4 76743862 76745707 +
3 domain predictions
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LotjaGi4g1v0445300.1
n.a. rRNA methyltransferase; TAIR: AT2G19870.1 tRNA/rRNA methyltransferase (SpoU) family protein; Swiss-Prot: sp|O94631|MRM1_SCHPO rRNA methyltransferase 1, mitochondrial; TrEMBL-Plants: tr|I1KPW8|I1KPW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0445300 LjG1.1_chr4 81801134 81804560 +
3 domain predictions
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LotjaGi5g1v0015400.1
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 LjG1.1_chr5 3091524 3096161 +
3 domain predictions
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LotjaGi5g1v0015400.2
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 LjG1.1_chr5 3091770 3093341 +
3 domain predictions
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LotjaGi5g1v0015400.3
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 LjG1.1_chr5 3091831 3093341 +
3 domain predictions
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LotjaGi5g1v0015400.4
n.a. Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 LjG1.1_chr5 3092011 3093341 +
3 domain predictions
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LotjaGi5g1v0204100.1
n.a. Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|V7BDS6|V7BDS6_PHAVU Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100 LjG1.1_chr5 50482363 50488312 -
3 domain predictions
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LotjaGi5g1v0204100.2
n.a. Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|A0A151U5G2|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100 LjG1.1_chr5 50482762 50488061 -
3 domain predictions
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LotjaGi5g1v0204100.3
n.a. Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|A0A151U5G2|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100 LjG1.1_chr5 50482762 50488208 -
3 domain predictions
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LotjaGi5g1v0237900.1
n.a. 50S ribosomal protein L7Ae; TAIR: AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q80UU2|RPP38_MOUSE Ribonuclease P protein subunit p38; TrEMBL-Plants: tr|A0A0R4J314|A0A0R4J314_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0237900 LjG1.1_chr5 54592029 54595028 +
3 domain predictions
 –