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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0240900 |
| Transcript ID | LotjaGi5g1v0240900.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein phosphatase 2C-like protein; TAIR: AT3G62260.2 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q3EAF9|P2C49_ARATH Probable protein phosphatase 2C 49; TrEMBL-Plants: tr|I3S3E4|I3S3E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0240900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54903496..54905403) extracted from Lotus japonicus Gifu genome v1.2.
CAGAATTATGATGGTAATATGATTGTGCTTGTTGCCTTCTAGTTTGAGATTATGTGCAGTCGAAATTCCTTCCATTGTGA CAGAAGAACATAAGGATAGAAATGTTTAGATATGAGCTCGTTATAAGCGAATCAACGCTTTGTGATTTAGGAGTTAGCAA AATAGTGTATCTAATAATTTGATATACTGTTTTTCATTTTCTGATTTGCATTGAATTATTTGTGTAGGATGCTAAGACTG CAGATGCAATCTCTGATGCTGCACTTGAATCTGCGGTTCTGCAATTTGTTCCCTGTATCCGTTCTGGTAGTTTTGCTGAC ATTGGGCCACGGAGATACATGGAAGATGAACATGTAAGGATAGATGATTTGTCTTCACATCTGGGATCACTGTACAACTT TCCCAACCCTAGTGCCTTTTATGGGGTAATCATCTTTAGTTCTTAACTCCTTGATCTCTTCATTTTGTTGAATCTTCATC TAAATTTAATCGAGCTTTGGCAAACCTCTTAGGTGTTTGATGGTCATGGAGGACCTGAAGCAGCAGCTTATATCAGAAAA AATGTTATTAAGTTCTTCTTTGAGGATGTCAGTTTTCCTCAGACTTCTGAAGTTGACAAGGTGTTTTTACAAGAGGTAGA AAATTCCCTCAGAAAGGCATTTCTTTTGGCTGACTCAGCTTTGGCTGATGATTGCAGTGTGAATACTTCATCAGGAACCA CAGCCCTTACTGCTTTCATATTTGGAAGGTATATCCATACTTGCACTCATAATTCTCCTTTATCTGCAACATGGGTATTA GCTTACTAGCTTATATTTATCTACTTTCTTACTAGAGGTATAGAAAAATATGGGAAAATTAAGTCGAATCATTAAGAAGG ATATTGATTTAAGTGGTCTTTTATTAGAAATGATTCACTATAAGTATTATTTATTGTTTGATTCATTTAGTGCATGTTTG GAAATCTTTCTATAATTGATTCAAAAGACAGAACCAATTTTGGAAGAAGCTAGCGTGTTTGGCAAAGATGGCTAAAATTA CATATATACCATAATAGTGTGAAACATAAGTAAGAAATAGTTGCTTTTGGAACCTATAAGTGATTTTGTCGGGCCAAAAT CAAAACCAAACGTATTGTGTGAGTAACTTTTAGCTGACGTATTGTGAGAGTTACTTTTTGCTTTCATAATTGATTTTGAG GAAAGAGAAGTTAATCTAAATATGGTATTAGTCAACTTCACTTAAATGGAGAAAAAGCTTTGGTTGTATTGGTATTTTGA GAGATACAACCTGTCTTATGTACCTGCTTTTGCTGATTTCTGCTATTCTTCCAGGCTCTTGATGGTGGCCAATGCTGGTG ACTGCCGAGCAGTTCTCAGCCGCAAAGGAGAGGCCATTGACATGTCTGAAGATCACAGGCCTATTTATCCATCAGAGCGG AGGCGAGTTGAAGATTTGGGAGGCTACATAGAAGATGGATATCTCAATGGGGTTCTATCAGTTACTAGAGCACTAGGAGA CTGGGACATGAAGCTACCAAAGGGTGCCCCCTCACCTTTGATTGCAGAACCCGAGTTCCGGCAAATGGTTCTAACAGAAG ATGATGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGTCAAGCCAGCATGCTGTTAGCCTTGTTCGCAAA GGCCTGAGGAGGCATGATGACCCAGAGAGGTGCGCGAGGGACCTGGTTATGGAGGCACTGCGACTGAACACATTTGACAA CCTCACAGTGATAATTGTTTGCTTCTCTTCCCTTGACCACAGGGAATCAGAGCCATCCCCACCTCAACGGAAATTGAGAT GCTGTAGTCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAGGAGGTGCTAGCAACTGA
CDS sequence (LotjaGi5g1v0240900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATGAACATGTAAGGATAGATGATTTGTCTTCACATCTGGGATCACTGTACAACTTTCCCAACCCTAGTGCCTT TTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCAGCAGCTTATATCAGAAAAAATGTTATTAAGTTCTTCTTTGAGG ATGTCAGTTTTCCTCAGACTTCTGAAGTTGACAAGGTGTTTTTACAAGAGGTAGAAAATTCCCTCAGAAAGGCATTTCTT TTGGCTGACTCAGCTTTGGCTGATGATTGCAGTGTGAATACTTCATCAGGAACCACAGCCCTTACTGCTTTCATATTTGG AAGGCTCTTGATGGTGGCCAATGCTGGTGACTGCCGAGCAGTTCTCAGCCGCAAAGGAGAGGCCATTGACATGTCTGAAG ATCACAGGCCTATTTATCCATCAGAGCGGAGGCGAGTTGAAGATTTGGGAGGCTACATAGAAGATGGATATCTCAATGGG GTTCTATCAGTTACTAGAGCACTAGGAGACTGGGACATGAAGCTACCAAAGGGTGCCCCCTCACCTTTGATTGCAGAACC CGAGTTCCGGCAAATGGTTCTAACAGAAGATGATGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGTCAA GCCAGCATGCTGTTAGCCTTGTTCGCAAAGGCCTGAGGAGGCATGATGACCCAGAGAGGTGCGCGAGGGACCTGGTTATG GAGGCACTGCGACTGAACACATTTGACAACCTCACAGTGATAATTGTTTGCTTCTCTTCCCTTGACCACAGGGAATCAGA GCCATCCCCACCTCAACGGAAATTGAGATGCTGTAGTCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAG GAGGTGCTAGCAACTGA
Protein sequence (LotjaGi5g1v0240900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDEHVRIDDLSSHLGSLYNFPNPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQTSEVDKVFLQEVENSLRKAFL LADSALADDCSVNTSSGTTALTAFIFGRLLMVANAGDCRAVLSRKGEAIDMSEDHRPIYPSERRRVEDLGGYIEDGYLNG VLSVTRALGDWDMKLPKGAPSPLIAEPEFRQMVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPERCARDLVM EALRLNTFDNLTVIIVCFSSLDHRESEPSPPQRKLRCCSLSAEALCSLRSLLEGGASN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 276 | 276 | 1.6E-145 | – | |
| Pfam | 1 | 250 | 250 | 5.6E-64 | ||
| ProSiteProfiles | 1 | 258 | 258 | 46.787 | ||
| CDD | 1 | 258 | 258 | 7.24522E-87 | ||
| PANTHER | 1 | 276 | 276 | 1.6E-145 | ||
| SUPERFAMILY | 1 | 260 | 260 | 4.58E-71 | ||
| Gene3D | 1 | 267 | 267 | 9.4E-81 | ||
| SMART | 3 | 256 | 254 | 2.3E-82 | ||
| ProSitePatterns | 27 | 35 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi5g1v0240900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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