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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241100 |
| Transcript ID | LotjaGi5g1v0241100.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT1G02460.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|I1JBC8|I1JBC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0241100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54939555..54942825) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTCGGTTCCCACTTCTAAAGACATTAAAAAAATTTGGTAATGGGCTAATGAAACTTACCAGATTCTCCACTATGCC TTCTTATTATATATAGTAACTCATCCTTTCTGATTCTGCATGTACTCCAATTCACAGTGCTCAAACTAGTTCAACTTGTT GCAACTTGTGATCTAGTGCTCCTAGTGGTCACTTGAACAACGAAATTAAAACCATTGGTTTCTTCCCAACTTTCCCAAAC TCAGGGTGCCTAATTAGTCCATAATTTGAGCCTTTATTTCTTTCATCTCATTTTTAACTCACAACCAATTGTTGTTTCAA GTTTTCAAATTTTCTCCTATTTTATCTGTTTTACCTTCTTATTTCTTTTTTAATCTCCACTACTAAAAAATACTCAGAAT GAGGAATTCTCCTATTTTAACACTATCAATTTTCTCCATATACTTTCTTACGTTATTTCTTTCCACACAAGCAAGATACC ATTTCCATACAAAACACCACCAGCACCCACATTCTCAAAAGTCTTCAGGAATTTCACTACCACCTGCTTCACTCCCTTCA CCTTCTAGCTATACTGATGATGATGCTCCTAGTCCTAGCCCCTCTGGTGATGAAAACTACCATGATGAATCTAACTTGTT CAATATAAGAACATTTGGGGCCATTGGTGATGGAATAGCTGATGATACAGAATCCTTCAAGATGGCTTGGGACAGTGCCT GCCTAAGTGAATCAGAAGTTAACACTATCCTTGTTCCCCCTGGATTCTCCTTCGTTATTCAATCTACTATATTCACAGGT CCTTGTCAAGGTAGCATAGTATTGAAGGTAATGTACTTAACTAAGCACATTTTTTGTTCTGCTGGTTGAGTTTTCAAGTG TGAGTTTGGAGACTCACATTGTTCAAGAATGAGTCCAAGATAATATAAGAAACATGACTCACATAACCAAAGCACTAAGT ATAGATGTGGTGTCCAATTCTCGTTGTGGTCTTGTTAGTTGGCCGGCCCCAAGGACAGACCTAGGCATAAGAAAATGGGG CGGTTGCTGGTCGCCCCAAGAGAAAAAGAATTCCTTAACAAAGCAGTGTAGAAAGGATATATTGCCCCCTTAAATAATTT ATATTATCTCTTTTAATTAGTCATTGTAGATTTCATTTCATGTGTTAAACTTTTGCCCCCTTCACATATTTTTTCTAGTT CAGTCCCAGCCTGCCCATTGGGCTTCCCCTGTCTCCCCCAACACCTCTTGCATCATGGATAAAACTTATGATTAAAGCTC ACTATTTTACTTTTCATATGGAGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAAT AGCAAGCGTCAATGGTTGGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATTGATGGGAGAGGACA AAAATGGTGGGACCTTCCCTGTAAACCTCATAAGGTATTCATGATTTCAAAGTATTAACAACAACAAAATAAGCAATTTT GATGTTTCAAGTACATTAGCTGATCCCTAATAAATTCCACAGGGACCTAATGGGACAACATCCCCAGGACCTTGTGACAG CCCAGTTGTAAGTTATCAAATCAAAACCTTTCTTATATATGCATCTTGTGCTTTTATAACTGCATTATGGTATATAATGT CATGAACCAGACGCTTAAACTGTTGGGGTAAAAGATACATGAATGATTTTTATGTTATATTTCACATTGGGCAAGAACTC ATTGGCCTTGAAGCGTGACACTGCACAGATCGACATGCTGAAATTCAAGTTTTTATTAGAATAATGGGACAACAAGGATT GATATCTGACCACTCAGTCATAGAAACTCTGTTACCATACCATGTCATGAATTAACTTCTGCAAAAGCTTAAGTTGTTGA GTAAAGTACACACCAATGTATATTTCTAATATATAACTTTACATATTGCAGGCCTTAAGGTTTTTCATGAGTTCCAACTT GACTGTAAAAGGACTTAGGATAAAAAATAGCCCCCAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTCCATGTAGAAT CAATCTTCTTAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATCCACATAGAGAATACCAATGACGTGAAGATATAC AATTCTGTCATTTCTAATGGTTAGCCACCAATATTCCCCTACTTTCCCTTCATCTTTTGCATCAAAAAGGAATTAGCATT AGATGTTTTATGAATTATAGGTGATGACTGTGTGTCCATTGGATCTGGTTGCTATGATGTTGATATAAAGAACATGACAT GCGGACCAGGTCATGGAATCAGGTAACTTTTTATTATTTCAAGAGAACTTTCATCAATAGGGTATTTTCTTGTTCTTATG GTTAACTTCAATCTATTTTCTCTAGTTAATGTCACTGTATTAATTTTTTCAGCATTGGTAGTCTGGGAAATCACAACTCT AGAGCCTGTGTTTCAAACATCACAGTGAGGGACTCAGTCATAAAATTGTCAGATAATGGGGTTAGAATCAAGACATGGCA AGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGCAACATTCACATGGATAGTGTGAAGAATCCCATTATAATTGACC AGTTCTATTGCCTTAGCAAGGAATGCACAAACAAGACCTCTGCAGTGTTTGTATCAGATATAGTTTACTCAAACATAAAG GGAACTTATGATGTAAGGCACCCTCCTATGCATTTCGCTTGCAGTGACTCTATCCCCTGCACCAACTTGACTCTTTCAGA TATTGAGCTTCTTCCTGCTCAAGGAGACATGGTGCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTCAGAGACACTAA CTATTCCCCCAGTGTTTTGCTTGCTGGAAGGTTTTCCTCAGTCCATTTCAACCAATGATATAGATCATTGCTAATCCACT GAATTCTGCAAAGCAAAAATGTGTGTTTGTGTATATAATTGCTATGGAAGTGATTAAGGAATGTAGTGTAATCTTGAGTA TTTGTGTGTGGTTGTTGAGGAGTTGTGTTTTATAAGCTCCTCCTCAATTATTGTTATGAAAGGGAAGTTTGGACTTGTTG GCTTGAATTTGTGACCAACATGTATGTAGCTTAAAGTGTGTTATTTTTAAAGATCAATCATGATGAATGTGTTAAGAATG AGTCCAAAACATGGCATTTGCAGCATTTCTCCTGAATAAATCTTGATCCACTACTGCCATTATTGTCATGG
CDS sequence (LotjaGi5g1v0241100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAAAGCTCACTATTTTACTTTTCATATGGAGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTG GCCAAAGAACAATAGCAAGCGTCAATGGTTGGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATTG ATGGGAGAGGACAAAAATGGTGGGACCTTCCCTGTAAACCTCATAAGGGACCTAATGGGACAACATCCCCAGGACCTTGT GACAGCCCAGTTGCCTTAAGGTTTTTCATGAGTTCCAACTTGACTGTAAAAGGACTTAGGATAAAAAATAGCCCCCAATT CCATTTCAGATTTGATGGCTGCCAAAGTGTCCATGTAGAATCAATCTTCTTAACAGCTCCAGCACTAAGCCCCAACACTG ATGGAATCCACATAGAGAATACCAATGACGTGAAGATATACAATTCTGTCATTTCTAATGGTGATGACTGTGTGTCCATT GGATCTGGTTGCTATGATGTTGATATAAAGAACATGACATGCGGACCAGGTCATGGAATCAGCATTGGTAGTCTGGGAAA TCACAACTCTAGAGCCTGTGTTTCAAACATCACAGTGAGGGACTCAGTCATAAAATTGTCAGATAATGGGGTTAGAATCA AGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGCAACATTCACATGGATAGTGTGAAGAATCCCATT ATAATTGACCAGTTCTATTGCCTTAGCAAGGAATGCACAAACAAGACCTCTGCAGTGTTTGTATCAGATATAGTTTACTC AAACATAAAGGGAACTTATGATGTAAGGCACCCTCCTATGCATTTCGCTTGCAGTGACTCTATCCCCTGCACCAACTTGA CTCTTTCAGATATTGAGCTTCTTCCTGCTCAAGGAGACATGGTGCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTCA GAGACACTAACTATTCCCCCAGTGTTTTGCTTGCTGGAAGGTTTTCCTCAGTCCATTTCAACCAATGATATAGATCATTG CTAA
Protein sequence (LotjaGi5g1v0241100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKAHYFTFHMEKVDGTLMPPDGPESWPKNNSKRQWLVFYRINGMSLEGSGLIDGRGQKWWDLPCKPHKGPNGTTSPGPC DSPVALRFFMSSNLTVKGLRIKNSPQFHFRFDGCQSVHVESIFLTAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSI GSGCYDVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKLSDNGVRIKTWQGGSGSVSGVTFSNIHMDSVKNPI IIDQFYCLSKECTNKTSAVFVSDIVYSNIKGTYDVRHPPMHFACSDSIPCTNLTLSDIELLPAQGDMVLDPFCWNAYGNS ETLTIPPVFCLLEGFPQSISTNDIDHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 333 | 329 | 2.7E-100 | ||
| PANTHER | 12 | 338 | 327 | 2.7E-216 | – | |
| PANTHER | 12 | 338 | 327 | 2.7E-216 | – | |
| SUPERFAMILY | 14 | 336 | 323 | 2.69E-107 | ||
| Pfam | 30 | 300 | 271 | 1.2E-86 | ||
| SMART | 91 | 140 | 50 | 970.0 | ||
| SMART | 141 | 162 | 22 | 40.0 | ||
| SMART | 164 | 184 | 21 | 9300.0 | ||
| ProSitePatterns | 171 | 184 | 14 | - | ||
| SMART | 194 | 215 | 22 | 28.0 | ||
| SMART | 223 | 244 | 22 | 2100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0241100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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