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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241100 |
| Transcript ID | LotjaGi5g1v0241100.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT1G02460.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|I1JBC8|I1JBC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0241100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54939953..54942508) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGAATTCTCCTATTTTAACACTATCAATTTTCTCCATATACTTTCTTACGTTATTTCTTTCCACACAAGCAAGATA CCATTTCCATACAAAACACCACCAGCACCCACATTCTCAAAAGTCTTCAGGAATTTCACTACCACCTGCTTCACTCCCTT CACCTTCTAGCTATACTGATGATGATGCTCCTAGTCCTAGCCCCTCTGGTGATGAAAACTACCATGATGAATCTAACTTG TTCAATATAAGAACATTTGGGGCCATTGGTGATGGAATAGCTGATGATACAGAATCCTTCAAGATGGCTTGGGACAGTGC CTGCCTAAGTGAATCAGAAGTTAACACTATCCTTGTTCCCCCTGGATTCTCCTTCGTTATTCAATCTACTATATTCACAG GTCCTTGTCAAGGTAGCATAGTATTGAAGGTAATGTACTTAACTAAGCACATTTTTTGTTCTGCTGGTTGAGTTTTCAAG TGTGAGTTTGGAGACTCACATTGTTCAAGAATGAGTCCAAGATAATATAAGAAACATGACTCACATAACCAAAGCACTAA GTATAGATGTGGTGTCCAATTCTCGTTGTGGTCTTGTTAGTTGGCCGGCCCCAAGGACAGACCTAGGCATAAGAAAATGG GGCGGTTGCTGGTCGCCCCAAGAGAAAAAGAATTCCTTAACAAAGCAGTGTAGAAAGGATATATTGCCCCCTTAAATAAT TTATATTATCTCTTTTAATTAGTCATTGTAGATTTCATTTCATGTGTTAAACTTTTGCCCCCTTCACATATTTTTTCTAG TTCAGTCCCAGCCTGCCCATTGGGCTTCCCCTGTCTCCCCCAACACCTCTTGCATCATGGATAAAACTTATGATTAAAGC TCACTATTTTACTTTTCATATGGAGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACA ATAGCAAGCGTCAATGGTTGGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATTGATGGGAGAGGA CAAAAATGGTGGGACCTTCCCTGTAAACCTCATAAGGTATTCATGATTTCAAAGTATTAACAACAACAAAATAAGCAATT TTGATGTTTCAAGTACATTAGCTGATCCCTAATAAATTCCACAGGGACCTAATGGGACAACATCCCCAGGACCTTGTGAC AGCCCAGTTGTAAGTTATCAAATCAAAACCTTTCTTATATATGCATCTTGTGCTTTTATAACTGCATTATGGTATATAAT GTCATGAACCAGACGCTTAAACTGTTGGGGTAAAAGATACATGAATGATTTTTATGTTATATTTCACATTGGGCAAGAAC TCATTGGCCTTGAAGCGTGACACTGCACAGATCGACATGCTGAAATTCAAGTTTTTATTAGAATAATGGGACAACAAGGA TTGATATCTGACCACTCAGTCATAGAAACTCTGTTACCATACCATGTCATGAATTAACTTCTGCAAAAGCTTAAGTTGTT GAGTAAAGTACACACCAATGTATATTTCTAATATATAACTTTACATATTGCAGGCCTTAAGGTTTTTCATGAGTTCCAAC TTGACTGTAAAAGGACTTAGGATAAAAAATAGCCCCCAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTCCATGTAGA ATCAATCTTCTTAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATCCACATAGAGAATACCAATGACGTGAAGATAT ACAATTCTGTCATTTCTAATGGTTAGCCACCAATATTCCCCTACTTTCCCTTCATCTTTTGCATCAAAAAGGAATTAGCA TTAGATGTTTTATGAATTATAGGTGATGACTGTGTGTCCATTGGATCTGGTTGCTATGATGTTGATATAAAGAACATGAC ATGCGGACCAGGTCATGGAATCAGGTAACTTTTTATTATTTCAAGAGAACTTTCATCAATAGGGTATTTTCTTGTTCTTA TGGTTAACTTCAATCTATTTTCTCTAGTTAATGTCACTGTATTAATTTTTTCAGCATTGGTAGTCTGGGAAATCACAACT CTAGAGCCTGTGTTTCAAACATCACAGTGAGGGACTCAGTCATAAAATTGTCAGATAATGGGGTTAGAATCAAGACATGG CAAGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGCAACATTCACATGGATAGTGTGAAGAATCCCATTATAATTGA CCAGTTCTATTGCCTTAGCAAGGAATGCACAAACAAGACCTCTGCAGTGTTTGTATCAGATATAGTTTACTCAAACATAA AGGGAACTTATGATGTAAGGCACCCTCCTATGCATTTCGCTTGCAGTGACTCTATCCCCTGCACCAACTTGACTCTTTCA GATATTGAGCTTCTTCCTGCTCAAGGAGACATGGTGCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTCAGAGACACT AACTATTCCCCCAGTGTTTTGCTTGCTGGAAGGTTTTCCTCAGTCCATTTCAACCAATGATATAGATCATTGCTAA
CDS sequence (LotjaGi5g1v0241100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTGGGACAGTGCCTGCCTAAGTGAATCAGAAGTTAACACTATCCTTGTTCCCCCTGGATTCTCCTTCGTTATTCA ATCTACTATATTCACAGGTCCTTGTCAAGGTAGCATAGTATTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTG AATCTTGGCCAAAGAACAATAGCAAGCGTCAATGGTTGGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGT TTAATTGATGGGAGAGGACAAAAATGGTGGGACCTTCCCTGTAAACCTCATAAGGCCTTAAGGTTTTTCATGAGTTCCAA CTTGACTGTAAAAGGACTTAGGATAAAAAATAGCCCCCAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTCCATGTAG AATCAATCTTCTTAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATCCACATAGAGAATACCAATGACGTGAAGATA TACAATTCTGTCATTTCTAATGGTGATGACTGTGTGTCCATTGGATCTGGTTGCTATGATGTTGATATAAAGAACATGAC ATGCGGACCAGGTCATGGAATCAGCATTGGTAGTCTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATCACAGTGA GGGACTCAGTCATAAAATTGTCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTG ACATTCAGCAACATTCACATGGATAGTGTGAAGAATCCCATTATAATTGACCAGTTCTATTGCCTTAGCAAGGAATGCAC AAACAAGACCTCTGCAGTGTTTGTATCAGATATAGTTTACTCAAACATAAAGGGAACTTATGATGTAAGGCACCCTCCTA TGCATTTCGCTTGCAGTGACTCTATCCCCTGCACCAACTTGACTCTTTCAGATATTGAGCTTCTTCCTGCTCAAGGAGAC ATGGTGCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTCAGAGACACTAACTATTCCCCCAGTGTTTTGCTTGCTGGA AGGTTTTCCTCAGTCCATTTCAACCAATGATATAGATCATTGCTAA
Protein sequence (LotjaGi5g1v0241100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWDSACLSESEVNTILVPPGFSFVIQSTIFTGPCQGSIVLKVDGTLMPPDGPESWPKNNSKRQWLVFYRINGMSLEGSG LIDGRGQKWWDLPCKPHKALRFFMSSNLTVKGLRIKNSPQFHFRFDGCQSVHVESIFLTAPALSPNTDGIHIENTNDVKI YNSVISNGDDCVSIGSGCYDVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKLSDNGVRIKTWQGGSGSVSGV TFSNIHMDSVKNPIIIDQFYCLSKECTNKTSAVFVSDIVYSNIKGTYDVRHPPMHFACSDSIPCTNLTLSDIELLPAQGD MVLDPFCWNAYGNSETLTIPPVFCLLEGFPQSISTNDIDHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 352 | 352 | 1.4E-223 | – | |
| Gene3D | 1 | 347 | 347 | 7.1E-109 | ||
| PANTHER | 1 | 352 | 352 | 1.4E-223 | – | |
| SUPERFAMILY | 2 | 350 | 349 | 1.36E-116 | ||
| Pfam | 11 | 314 | 304 | 4.0E-90 | ||
| SMART | 105 | 154 | 50 | 970.0 | ||
| SMART | 155 | 176 | 22 | 40.0 | ||
| SMART | 178 | 198 | 21 | 9300.0 | ||
| ProSitePatterns | 185 | 198 | 14 | - | ||
| SMART | 208 | 229 | 22 | 28.0 | ||
| SMART | 237 | 258 | 22 | 2100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0241100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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