Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241500 |
| Transcript ID | LotjaGi5g1v0241500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor; TAIR: AT5G14670.1 ADP-ribosylation factor A1B; Swiss-Prot: sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2; TrEMBL-Plants: tr|A0A0L9U935|A0A0L9U935_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0241500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54984614..54986179) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTTGTCTTTCACCAAGCTGTTCAGCAGGCTCTTTGCCAAGAAAGAGATGCGTATTCTTATGGTAGGTCTCGATGC TGCGGGTAAGACTACCATTCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCCACCATTGGTAAGTTACCAC CACGCTTCATTTGGCATTTTCCACACATTTCCCTTCATTCTAATATTATTCTTTGTGGTGTCCATCGAGATTGGTATATT ATATTGTCAATGTTTTAAGCCTAACTATATATGTTGTCTTCATGTTGATGGTTTTATCTCATGTCTCACCATTCTAATAG TACGTTCCTTGTGCAATTTCTACTAATGTCTCATTTTGTCTAGGGTTTAATGTGGAAACCGTGGAATATAAGAACATCAG CTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGGTAATTTTCCCCCCTACATCTTCTATGTCTATATTAGAATACTTTT TGATATTTTAGCAAATTGTACTCAACAATTTTGTTGATTTTATAACATGGTAACTAGCCTATAATCCACTTGACTAACTA TGCAAAATACATATGAGCTGCAAAATGTTGTTTGTATTCACCATACCATACATGTACTCCTTTTCATTAAGATACAGATG TGCTTCAAAATACATATGTTGTTTGGATTAGAGGTGCATAATGGTTCATTCTGCACAATGTTTATGCAAATTTGTGCTTA TGGTGATACCTAGCTGGTTATCAATATCATAATCCAAATGTCAATGACATCTTCTACTCCTTTTTAATGCCAGTTTCTTG ATTTACGACTCTGGATGTAATCAACCTCTTACAAGTGTGATAAACTACTATTCACTTATTTTTTATGGAATTTGTATATC TTTAAGTTAGTCCTTTGGATCAATTTGGCACTGGCCCCTAAAACCTCTGTGTTATTCTGTTAGATCTCTTTGGATCAATT TGGTACTGACCATTGATATGTTTGTACCTGTAGATCCGTCCACTGTGGAGACATTACTTCCAAAATACACAAGGACTTAT TTTTGTGGTTGATAGCAATGACAGGGACCGTGCTGTTGAAGCTAGAGATGAGCTGCATAGGATGTTGAATGAGGTAATAA AACAGATCCTGAATGAGTGATTATGAAATGTCGATTATTTCAGATGATTTTGTATACTGGATTATACTGTCTTTTTGGAT GCTTATAATCTTACAATGGTAGGATGAGTTGAGAGATGCCGTGCTACTAGTTTTTGCTAACAAGCAAGATCTTCCAAATG CTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCATTCTCTCCGTCAGCGTCACTGGTACACTAAAGATTTTGCT CTCAACATTTAACTCCTCTCTGTCTTCCTGCATTCATCACTCATTCTCACTAACATGCTCTACGCATGCAGGTATATCCA GAGCACATGTGCCACGTCTGGTGAAGGGCTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGTTAATA TGGAACAGTTATTATGACGTACTTGGAAATTTAAATTACAACATAA
CDS sequence (LotjaGi5g1v0241500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTGTCTTTCACCAAGCTGTTCAGCAGGCTCTTTGCCAAGAAAGAGATGCGTATTCTTATGGTAGGTCTCGATGC TGCGGGTAAGACTACCATTCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCCACCATTGGGTTTAATGTGG AAACCGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATATCCGTCCACTGTGGAGACATTACTTCCAAAATACACAA GGACTTATTTTTGTGGTTGATAGCAATGACAGGGACCGTGCTGTTGAAGCTAGAGATGAGCTGCATAGGATGTTGAATGA GGATGAGTTGAGAGATGCCGTGCTACTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAA CTGATAAGCTTGGTCTTCATTCTCTCCGTCAGCGTCACTGGTATATCCAGAGCACATGTGCCACGTCTGGTGAAGGGCTT TATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGTTAATATGGAACAGTTATTATGA
Protein sequence (LotjaGi5g1v0241500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDIRPLWRHYFQNTQ GLIFVVDSNDRDRAVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL YEGLDWLSNNIANKVNMEQLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 175 | 175 | 6.8E-125 | – | |
| SMART | 1 | 171 | 171 | 2.0E-19 | – | |
| PANTHER | 1 | 174 | 174 | 4.8E-143 | – | |
| PANTHER | 1 | 174 | 174 | 4.8E-143 | – | |
| Pfam | 5 | 171 | 167 | 1.4E-71 | ||
| ProSiteProfiles | 11 | 171 | 161 | 22.906 | – | |
| SUPERFAMILY | 14 | 174 | 161 | 6.88E-52 | ||
| TIGRFAM | 16 | 151 | 136 | 1.3E-16 | ||
| Gene3D | 18 | 171 | 154 | 8.5E-63 | – | |
| CDD | 18 | 170 | 153 | 1.66423E-117 | – | |
| PRINTS | 19 | 42 | 24 | 1.8E-7 | ||
| PRINTS | 113 | 134 | 22 | 1.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0241500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…