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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243500 |
| Transcript ID | LotjaGi5g1v0243500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-carotene isomerase d27, chloroplastic; TAIR: AT4G01995.1 beta-carotene isomerase D27; Swiss-Prot: sp|Q7XA78|D27_ARATH Beta-carotene isomerase D27, chloroplastic; TrEMBL-Plants: tr|A0A0B2PM23|A0A0B2PM23_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0243500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55228608..55231501) extracted from Lotus japonicus Gifu genome v1.2.
GCAGACAGTTAAACTGAACGGTGGTTAGTTGTTACGGTTGGAGCGAAATGAAGGCGCTGGGGATTGTTATCGGCGGCGGA GCACCACCGCCGCCGATGCTCTGTTCAAGTGTACGGAACCAGCGGTTTCGCGTTTCTTTCTCCTCTTCTTCTTCTTCAGG ATCCAAAACGGTGCGTATCTTCTGCTTCTCTTTGTATTTTTGCTGCAAAATTCGCTTCAACTGTGTATTTTTTGTGTAAA TTGAATCAGGTGGAAATTGCAGCTCCAAAAATTGAATACAAGCCTAATGTTGTGGATGATTTGTTCCTCAATTTGTTCCG CAACAAATTAGTACAGGTAAACAAAATTTTAAATTTCTATGAATTTTACTCTTTTTTTTGTCAAATATTTCAATTGAAAT TATGGGTATCAAAATTTTCATATTAATCAGCTGAAAAAACCCTGTCTTGAAAGGTTACCTTATGTTTCTATGTTTACTGT TAGTTAATTAATGGGATGGAATAGATGTGTTCTTTTATTGGTTATTATTTTGCAATGTGGTAGCTGAGTGTGAATTTTAC TATAGGAGGTGGGATGGGACTCAAAGAAACCTGGATATGATGGACTAATTGAAGTTGCGAATCGATTAATGATGAAGGGT ACTACAAATTCCGATACCATAGAAGCAACGGTATTTGAGTATTTCCATTCGTTTCTCTCTCGTTCTCTCAAGCTTTCATT TACTCTAAGTACATTGGAGAGTCTTTGTTTATGCAAATAGCATTTACTGAAGGAGAACATGGTTTCAAAATGTCTACGTT GAACTTAAAACTTGTTCTGAAACTAATATCAAATATTGATAATGTAAAAATGGAAACTTGTCTATGTTTGGTTTTATGTT GAGTGATCGGAACGCCAACGTTTGCCTTTCCTTCCTTTCATGTTAGGAACCATGTGCTATCCTGATTTCCAATCCACATT TACTTTGTTTGAACTAGTTTTACTTTTGAAACTGATCAGAAAATAATTTGATTTTTATCAGAATGGGTGATTGCCAAACT TACCATATATACAAACTGTTAAAACAACTCACCTTTTTGGAATTTGGCAAATACCTTCTTAGACATTACTTCTGATGTTG ATAATTTCTATATGTATTTCCGCAACAGTGCAACCTAGTAATCTCAATTTTTTCCAGTAGTTGACCTTATGTGGATTCTT ATGATTTTTTAGTTGTAATGTTGTCCAAAAGTAAGTTTGGTGACTTCTGACAGGTACGAATATTGCGGTCTTTGTTTCCT CCTTTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTCTAGGAGGAGGCAAAATTGCTGCTATAATGGTTGGTGAGTC TGAAATGATCATCTCTTTTTTTTTTTGAATTCTTCCACTGATGTTCCCAAGAACATAACAGGCTAAGAAGAACTTTAGTA GAGATCCTAAAATTGTTTTAGTTTTGAAGCAAGGGTTACTGCACTGACTTGTCAGTGGCTTATGGGCCCATGCAAAGTCA ATTCTGTAGACCTACCAGATGGAACCTCATGCAGTAGTGGGGTGATCACTTGTACTTTTCTCTGTTTTAACTTAATAATC CTGTAATGTCCAAAGTGATGTGTTTACAAAATCTTGTAGGTGTATGTGGAAAGATGCAAGTATCTGGAGGAAAGCAAATG TGTTGGTATTTGCACTAACACCTGTAAGTTTCCAACACAGGTTAGTGATTTTTCAAAACACCTTAAGAGCTAAAAATACT GTGATTGCTTTGAAGTTCTTGCTTTCTCTGGATGATTATTGCATCTGTGATCTGACTCTATTTACAATGTAGGCCTTCTT CAAGGATCATATGGGAGTGCCATTGCTTATGGAGCCTAACTTTGGTGATTACAGCTGTCAGGTAATATTGAGTATACCTT TCTACAATTGATTCTGGAGTCAAAATCAATTCGGAAAAGAAATTCTTACGAGTACCTTCTACGTGTCAGAATTGATTTCG AAGAAAATAAACTGATTCAAACATGCTATTATAATTGCAGTTCAAATTTGGAGTTCTTCCCCCACTTCCTGAAGACGACA CTGTCCTGAAGGAGCCTTGCCTGGAAGCATGTCCAAATGCTTCCCGACGAAGAATAGTCACCAGAAAAACAGATATTACC GAGTGCCCAAAGACATGAAAACATTTTTCTTGGGAACCTTCCAAATCCTCTTGCACATTCTGGCCCCAACTTGTCTTTGA AGATGGAACTGAAGCTTTGGGTTTTCCATACAGATAATTCATCCTTCACTGAGCTCATATATGAAAATTTTAATACAACT CATCCTTTGTATATAGGATGTTAATACTTTGAACTTGTTTGTATATTATGTATGTATTTTACTATTTTCGAATGAATACA TTTATATTTTAATCACCTTCTTTTAGACATTGCTAGACTATTACATAGCCACTAAAATAGTAACTCTGTCCCTGGTTAAA GATAACTTTACATAATCCGAGCAGCTTTATATCTAAATTATACAAGAAGGTCTAAATTGCCAACATCAAGATTCTACTGC AGAGTCATAATTGCCAACATCTTTAAAATTGCACGGTAGTATATTACAGCCACATCACGTCATCTTTTTTATCCATTTTT TTTGGTTTAGCAAGCCTTGACTCACTACAATAATTAGTCAATTTAGCGTCGACCCGAGGCTCATGCTAAATACTCATAAA TAATGATTGTTAGCATCAGCATAAACGACGCAAGACTCGAAAATGAGAATTTATATGTTTTAAGGAGTGTTAGTATGCCA GCTAAGTCCACGTTGAGTTTCAGAGGCTAATGCTATACACAAATCACACAATTGAAATATAGCATTTTCTTAAAATTAAT TATTTCAAATTATT
CDS sequence (LotjaGi5g1v0243500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCGCTGGGGATTGTTATCGGCGGCGGAGCACCACCGCCGCCGATGCTCTGTTCAAGTGTACGGAACCAGCGGTT TCGCGTTTCTTTCTCCTCTTCTTCTTCTTCAGGATCCAAAACGGTGGAAATTGCAGCTCCAAAAATTGAATACAAGCCTA ATGTTGTGGATGATTTGTTCCTCAATTTGTTCCGCAACAAATTAGTACAGGAGGTGGGATGGGACTCAAAGAAACCTGGA TATGATGGACTAATTGAAGTTGCGAATCGATTAATGATGAAGGGTACTACAAATTCCGATACCATAGAAGCAACGGTACG AATATTGCGGTCTTTGTTTCCTCCTTTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTCTAGGAGGAGGCAAAATTG CTGCTATAATGGTGTATGTGGAAAGATGCAAGTATCTGGAGGAAAGCAAATGTGTTGGTATTTGCACTAACACCTGTAAG TTTCCAACACAGGCCTTCTTCAAGGATCATATGGGAGTGCCATTGCTTATGGAGCCTAACTTTGGTGATTACAGCTGTCA GTTCAAATTTGGAGTTCTTCCCCCACTTCCTGAAGACGACACTGTCCTGAAGGAGCCTTGCCTGGAAGCATGTCCAAATG CTTCCCGACGAAGAATAGTCACCAGAAAAACAGATATTACCGAGTGCCCAAAGACATGA
Protein sequence (LotjaGi5g1v0243500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKALGIVIGGGAPPPPMLCSSVRNQRFRVSFSSSSSSGSKTVEIAAPKIEYKPNVVDDLFLNLFRNKLVQEVGWDSKKPG YDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPLGGGKIAAIMVYVERCKYLEESKCVGICTNTCK FPTQAFFKDHMGVPLLMEPNFGDYSCQFKFGVLPPLPEDDTVLKEPCLEACPNASRRRIVTRKTDITECPKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 232 | 213 | - | – | |
| PANTHER | 24 | 138 | 115 | 2.8E-85 | – | |
| PANTHER | 24 | 138 | 115 | 2.8E-85 | ||
| Pfam | 134 | 196 | 63 | 4.2E-29 | ||
| PANTHER | 138 | 231 | 94 | 2.8E-85 | – | |
| PANTHER | 138 | 231 | 94 | 2.8E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0243500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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