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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243500 |
| Transcript ID | LotjaGi5g1v0243500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-carotene isomerase d27, chloroplastic; TAIR: AT4G01995.1 beta-carotene isomerase D27; Swiss-Prot: sp|Q7XA78|D27_ARATH Beta-carotene isomerase D27, chloroplastic; TrEMBL-Plants: tr|A0A0B2PM23|A0A0B2PM23_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0243500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55228655..55230785) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGCGCTGGGGATTGTTATCGGCGGCGGAGCACCACCGCCGCCGATGCTCTGTTCAAGTGTACGGAACCAGCGGTT TCGCGTTTCTTTCTCCTCTTCTTCTTCTTCAGGATCCAAAACGGTGCGTATCTTCTGCTTCTCTTTGTATTTTTGCTGCA AAATTCGCTTCAACTGTGTATTTTTTGTGTAAATTGAATCAGGTGGAAATTGCAGCTCCAAAAATTGAATACAAGCCTAA TGTTGTGGATGATTTGTTCCTCAATTTGTTCCGCAACAAATTAGTACAGGTAAACAAAATTTTAAATTTCTATGAATTTT ACTCTTTTTTTTGTCAAATATTTCAATTGAAATTATGGGTATCAAAATTTTCATATTAATCAGCTGAAAAAACCCTGTCT TGAAAGGTTACCTTATGTTTCTATGTTTACTGTTAGTTAATTAATGGGATGGAATAGATGTGTTCTTTTATTGGTTATTA TTTTGCAATGTGGTAGCTGAGTGTGAATTTTACTATAGGAGGTGGGATGGGACTCAAAGAAACCTGGATATGATGGACTA ATTGAAGTTGCGAATCGATTAATGATGAAGGGTACTACAAATTCCGATACCATAGAAGCAACGGTATTTGAGTATTTCCA TTCGTTTCTCTCTCGTTCTCTCAAGCTTTCATTTACTCTAAGTACATTGGAGAGTCTTTGTTTATGCAAATAGCATTTAC TGAAGGAGAACATGGTTTCAAAATGTCTACGTTGAACTTAAAACTTGTTCTGAAACTAATATCAAATATTGATAATGTAA AAATGGAAACTTGTCTATGTTTGGTTTTATGTTGAGTGATCGGAACGCCAACGTTTGCCTTTCCTTCCTTTCATGTTAGG AACCATGTGCTATCCTGATTTCCAATCCACATTTACTTTGTTTGAACTAGTTTTACTTTTGAAACTGATCAGAAAATAAT TTGATTTTTATCAGAATGGGTGATTGCCAAACTTACCATATATACAAACTGTTAAAACAACTCACCTTTTTGGAATTTGG CAAATACCTTCTTAGACATTACTTCTGATGTTGATAATTTCTATATGTATTTCCGCAACAGTGCAACCTAGTAATCTCAA TTTTTTCCAGTAGTTGACCTTATGTGGATTCTTATGATTTTTTAGTTGTAATGTTGTCCAAAAGTAAGTTTGGTGACTTC TGACAGGTACGAATATTGCGGTCTTTGTTTCCTCCTTTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTCTAGGAGG AGGCAAAATTGCTGCTATAATGGTTGGTGAGTCTGAAATGATCATCTCTTTTTTTTTTTGAATTCTTCCACTGATGTTCC CAAGAACATAACAGGCTAAGAAGAACTTTAGTAGAGATCCTAAAATTGTTTTAGTTTTGAAGCAAGGGTTACTGCACTGA CTTGTCAGTGGCTTATGGGCCCATGCAAAGTCAATTCTGTAGACCTACCAGATGGAACCTCATGCAGTAGTGGGGTGATC ACTTGTACTTTTCTCTGTTTTAACTTAATAATCCTGTAATGTCCAAAGTGATGTGTTTACAAAATCTTGTAGGTGTATGT GGAAAGATGCAAGTATCTGGAGGAAAGCAAATGTGTTGGTATTTGCACTAACACCTGTAAGTTTCCAACACAGGTTAGTG ATTTTTCAAAACACCTTAAGAGCTAAAAATACTGTGATTGCTTTGAAGTTCTTGCTTTCTCTGGATGATTATTGCATCTG TGATCTGACTCTATTTACAATGTAGGCCTTCTTCAAGGATCATATGGGAGTGCCATTGCTTATGGAGCCTAACTTTGGTG ATTACAGCTGTCAGGTAATATTGAGTATACCTTTCTACAATTGATTCTGGAGTCAAAATCAATTCGGAAAAGAAATTCTT ACGAGTACCTTCTACGTGTCAGAATTGATTTCGAAGAAAATAAACTGATTCAAACATGCTATTATAATTGCAGTTCAAAT TTGGAGTTCTTCCCCCACTTCCTGAAGACGACACTGTCCTGAAGGAGCCTTGCCTGGAAGCATGTCCAAATGCTTCCCGA CGAAGAATAGTCACCAGAAAAACAGATATTACCGAGTGCCCAAAGACATGA
CDS sequence (LotjaGi5g1v0243500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCGCTGGGGATTGTTATCGGCGGCGGAGCACCACCGCCGCCGATGCTCTGTTCAAGTGTACGGAACCAGCGGTT TCGCGTTTCTTTCTCCTCTTCTTCTTCTTCAGGATCCAAAACGGTGGAAATTGCAGCTCCAAAAATTGAATACAAGCCTA ATGTTGTGGATGATTTGTTCCTCAATTTGTTCCGCAACAAATTAGTACAGGAGGTGGGATGGGACTCAAAGAAACCTGGA TATGATGGACTAATTGAAGTTGCGAATCGATTAATGATGAAGGGTACTACAAATTCCGATACCATAGAAGCAACGGTACG AATATTGCGGTCTTTGTTTCCTCCTTTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTCTAGGAGGAGGCAAAATTG CTGCTATAATGGTTGCAAGGGTTACTGCACTGACTTGTCAGTGGCTTATGGGCCCATGCAAAGTCAATTCTGTAGACCTA CCAGATGGAACCTCATGCAGTAGTGGGGTGTATGTGGAAAGATGCAAGTATCTGGAGGAAAGCAAATGTGTTGGTATTTG CACTAACACCTGTAAGTTTCCAACACAGGCCTTCTTCAAGGATCATATGGGAGTGCCATTGCTTATGGAGCCTAACTTTG GTGATTACAGCTGTCAGTTCAAATTTGGAGTTCTTCCCCCACTTCCTGAAGACGACACTGTCCTGAAGGAGCCTTGCCTG GAAGCATGTCCAAATGCTTCCCGACGAAGAATAGTCACCAGAAAAACAGATATTACCGAGTGCCCAAAGACATGA
Protein sequence (LotjaGi5g1v0243500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKALGIVIGGGAPPPPMLCSSVRNQRFRVSFSSSSSSGSKTVEIAAPKIEYKPNVVDDLFLNLFRNKLVQEVGWDSKKPG YDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPLGGGKIAAIMVARVTALTCQWLMGPCKVNSVDL PDGTSCSSGVYVERCKYLEESKCVGICTNTCKFPTQAFFKDHMGVPLLMEPNFGDYSCQFKFGVLPPLPEDDTVLKEPCL EACPNASRRRIVTRKTDITECPKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 264 | 245 | - | – | |
| PANTHER | 24 | 263 | 240 | 1.4E-112 | – | |
| PANTHER | 24 | 263 | 240 | 1.4E-112 | ||
| Pfam | 148 | 228 | 81 | 6.9E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0243500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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