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LotjaGi5g1v0248300.1

Overview

Field Value
Gene ID LotjaGi5g1v0248300
Transcript ID LotjaGi5g1v0248300.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT3G16770.1 ethylene-responsive element binding protein; Swiss-Prot: sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3; TrEMBL-Plants: tr|A0A096ZG76|A0A096ZG76_LOTCO AP2/ERF; Found in the gene: LotjaGi5g1v0248300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:55695879..55697673) extracted from Lotus japonicus Gifu genome v1.2.

CTTCACCTATCGTTACTCTTAGCTCAATAACGTTATCTACTCATAATTCAACCATACCATACTCTAGACTCTAGAGTCTA GACAGCTGCTTGCCAGCCAAGCAAGCTACAACATGGTGAGCAAAGTAAAAGAAAACAAAATCGAATTGTCATAACTTATA GGGTAGGTGATGTGTACCAGGAAGGTTCCTGAGTCTCTATCCATGCACTAGTTCCCTCCCACATTTTCCAACTACATAAA CCCTCTGGCCTCCAATTTTATTCTTCACGTCCTGTCAATCTCACACTCACACAAACACAAACACAAACACAAACAAAAAC TCTCCCACAGAAATCTTCACAAACTTTTCATCATACTTGTCTAAACCTATTCCTACTAAACCTTTGATTTCCTTCTCTTC CCTCAATCACCCACCACCTACAACCTGAGTTAAGTAACCAACAACCACCATGTGTGGCGGTGCTATCATCGCTGACTTCA TCCCCCGCCGTGGAGGCCGCCGCCTCACCGCCTCCGAGCTCTGGCCAAACTCATTCGGCAAGCAAAATGACTCACAAATC GAAAAACCTCCCATTGCTCATCAACAACAACAACAACAACCATCCACCTTCAAAAGATCTCAACCTCACATAGGTCAGTG TACTCATTTCCTCACTCATTTTCCACCATTTTTGTTTTGTTTTCTGTTTCTGAATGAGATTTTCATTTTCTACTATTCAC AGCTGAGAAACCAATGAAAAGACAGAGGAAAAACCTCTACAGAGGAATCCGGCAACGTCCATGGGGAAAATGGGCTGCAG AAATTCGTGATCCGAGAAAAGGGGTTCGTGTTTGGCTCGGCACATTCAACACCGCTGAAGAAGCTGCTAGAGCCTACGAT CGAGAAGCTCGGAAAATCCGTGGCAAGAAAGCTAAGGTGAATTTCCCCAACGAAGACGATGATGGCTACTCTGTTCAAAC TCGTCGTTTCAACCCACCGGTTCCACTCCGACCCAATATCCCTCCCCTGTTTCAACAACAGTACCGTCACGATCAGAATC ATAACCATAAGAATCTGAACTTTGAGTTTGGTTATGATCTGAACCAAACAGGGTCTTTTCCTCCCCACGTGGGTGGAATC AGCACTGACTCTGTTCTGGTATCTGTTGATGAAAATTCAGGGTCAGGGTCTGGATTAGGATCCGGAACAGGCTCAGAGGG TGGTGGTTACTCACCAATGGAGTTCATGGGCTCTGAGCAGATCGGGAACGGTTACTTTGGCGGTGGTTTGAAGGAGAAGG AAAAGGAGAAAGAAACAGAGCAGAAAACAGAGGTGGTTGAAGAAGCTGAAGCGGCGGCGAAGAACGAAGTGCAGGAGCTG TCGGATGAGCTGATGGCGTACGAGAATTACATGAAATTCTACCAGATTCCGTACTATGATGGACAATCGGTGGCAGAGAA TAATAGTGTTCAGGAAAGTGAGGTAGGGGATCTTTGGAGCTTCGATGAGTGAGAATTTTCAAGGATTTTCTCTTCATCCT CACCATGACATGACTTGCTTCTGAGCATTTTTTTCACTGCATTTTTTACCTTATGGATTGAATTGTAAATAGGGTACTTG GTTATAATTGTTGCTATGAGCTTCGACTCTCTTGTTTATTTGCTTTTAGAACTTAGGATCATCATCTAGTTTCTTTGAAT TGCAATTTCCTTTTTGGTGCTATGTTGAATTGTAATTTTAATTTTGCAGGATGAAGTTAACAATTTCGAATTCCAATAAT TTATGAATTTTAATTTTGCAGGGTCTTATGGTGAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0248300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTGGCGGTGCTATCATCGCTGACTTCATCCCCCGCCGTGGAGGCCGCCGCCTCACCGCCTCCGAGCTCTGGCCAAA CTCATTCGGCAAGCAAAATGACTCACAAATCGAAAAACCTCCCATTGCTCATCAACAACAACAACAACAACCATCCACCT TCAAAAGATCTCAACCTCACATAGCTGAGAAACCAATGAAAAGACAGAGGAAAAACCTCTACAGAGGAATCCGGCAACGT CCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCGAGAAAAGGGGTTCGTGTTTGGCTCGGCACATTCAACACCGCTGA AGAAGCTGCTAGAGCCTACGATCGAGAAGCTCGGAAAATCCGTGGCAAGAAAGCTAAGGTGAATTTCCCCAACGAAGACG ATGATGGCTACTCTGTTCAAACTCGTCGTTTCAACCCACCGGTTCCACTCCGACCCAATATCCCTCCCCTGTTTCAACAA CAGTACCGTCACGATCAGAATCATAACCATAAGAATCTGAACTTTGAGTTTGGTTATGATCTGAACCAAACAGGGTCTTT TCCTCCCCACGTGGGTGGAATCAGCACTGACTCTGTTCTGGTATCTGTTGATGAAAATTCAGGGTCAGGGTCTGGATTAG GATCCGGAACAGGCTCAGAGGGTGGTGGTTACTCACCAATGGAGTTCATGGGCTCTGAGCAGATCGGGAACGGTTACTTT GGCGGTGGTTTGAAGGAGAAGGAAAAGGAGAAAGAAACAGAGCAGAAAACAGAGGTGGTTGAAGAAGCTGAAGCGGCGGC GAAGAACGAAGTGCAGGAGCTGTCGGATGAGCTGATGGCGTACGAGAATTACATGAAATTCTACCAGATTCCGTACTATG ATGGACAATCGGTGGCAGAGAATAATAGTGTTCAGGAAAGTGAGGTAGGGGATCTTTGGAGCTTCGATGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0248300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCGGAIIADFIPRRGGRRLTASELWPNSFGKQNDSQIEKPPIAHQQQQQQPSTFKRSQPHIAEKPMKRQRKNLYRGIRQR PWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDGYSVQTRRFNPPVPLRPNIPPLFQQ QYRHDQNHNHKNLNFEFGYDLNQTGSFPPHVGGISTDSVLVSVDENSGSGSGLGSGTGSEGGGYSPMEFMGSEQIGNGYF GGGLKEKEKEKETEQKTEVVEEAEAAAKNEVQELSDELMAYENYMKFYQIPYYDGQSVAENNSVQESEVGDLWSFDE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190:SF182
1 316 316 5.2E-113 –
PANTHER
PTHR31190
1 316 316 5.2E-113 –
MobiDBLite
mobidb-lite
25 57 33 - –
MobiDBLite
mobidb-lite
25 59 35 - –
Gene3D
G3DSA:3.30.730.10
72 132 61 1.6E-30
IPR036955
SMART
SM00380
73 136 64 2.7E-39
IPR001471
ProSiteProfiles
PS51032
73 130 58 23.775
IPR001471
SUPERFAMILY
SSF54171
73 131 59 2.55E-22
IPR016177
Pfam
PF00847
74 122 49 1.0E-11
IPR001471
CDD
cd00018
74 131 58 1.07562E-33
IPR001471
PRINTS
PR00367
74 85 12 8.4E-12
IPR001471
PRINTS
PR00367
96 112 17 8.4E-12
IPR001471
MobiDBLite
mobidb-lite
205 226 22 - –
Coils
Coil
246 284 39 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0248300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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