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LotjaGi5g1v0250000.2

Overview

Field Value
Gene ID LotjaGi5g1v0250000
Transcript ID LotjaGi5g1v0250000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Gamma-tubulin complex component; TAIR: AT3G53760.1 GAMMA-TUBULIN COMPLEX PROTEIN 4; Swiss-Prot: sp|Q9M350|GACP4_ARATH Gamma-tubulin complex component 4; TrEMBL-Plants: tr|A0A151U4M2|A0A151U4M2_CAJCA Gamma-tubulin complex component; Found in the gene: LotjaGi5g1v0250000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:55858020..55861113) extracted from Lotus japonicus Gifu genome v1.2.

ACAACACAGCAGAGACGTCAGCAGTTCCGACCAATGTGGCGTGTTAGAGAACATATGGCATTCTTGATCAGAAATCTCCA ATTTTATATTCAGGTTGTCATTCATATCTTTTCATCCATGTTAAATTTACCAAATTACAACTATAAATATTGTTTGAAGT GGTGTGAACTAACCATAGTTTGGTGCTTAACTGCTTATATGTTTGTTTGGATTCACATGCGCTCAGGGGTGCAACTTGAG AGCAAAGTTTTGGGGCGGGACATGTCTAGACCTTAGGGGCTTATGAGTCGTGCCACGATTGAAGGTTCTATTGAGAGGTG TACTATCATTAAGGGGATCAAGATCCTCTCAATTGTAAAACATCTTGACAATGACAAGTTTCACCGTCGATTTAATTATT TTTATTTTTTAATTATTAAACACACAAAAATCAATGGATAGATGGTGAAACTTGACATAGTCAAGTGTTTTTACTATTGA GAGGATCTGTTTCCGTCATTATAGATAGGATGGTGTGGGGCGAAGATGACAAATACTTCCCCGTTCTCCCCTTGTCTTCT ACTTCTACCATAGGGTTAGGAGTATGACCTCTGTCCCTTAATTTGCTTAAAGTTTTTATTTAACCCTCTCTCCATCCTTA TGGGGGAAATGTTCCTGATCTTGGGGGCCTGAATGAGGTGGTGATTCTCATGGGGATCCTGAATGCAGGGAGAAATTGTC ATCCCTAGCTATCATATATGGTAGTGGAGGGACCTTATTTTTATGGGTTAGAAGACCCACCATTGCTTGCTCTCATGCGC AGACAAGACATGCTTTATGAGTGAAAATGGATGATTGGTGACCAGCTGACTATATTCAATTTATGTTCCCTTCCCCTTTG GTAATAACATAAATTTTAAATAATGCAAAATAATTACAAGAGGTGATGATATTTGACATTTTTGTCTTTTTGGCATGTAC TACATCTTTTCATATTGAATAGAATGCCCATTTCACATTCAAAATTCTGTGCTTTCCTTTGTAGGTGGATGTGATAGAGT CTCAATGGAACATTTTACAATCTCACATTCAAGATTCTCATGACTTCACAGAACTTGTGGGCTTTCATCAAGAGTAATAC TTTCTAGATTGCATGTTGTTTATTTTTCACATTTTATCCATATTAAAATAGTGCTTCTTGGTGACCAAATCAGTGAGCCA ACTTTTATTATCCTATTGCTGTAACCTGTCAGGGGTATTGTGTGGTTAAAGATAATTTAGTATTTTCAGTTCCTGTAACT AAGCACCGATAGTCACAGTAGCTCAAAAAAGAAAAGCTCCCTTTACTTTGTCCAAGCAGTTTAACAAGAGAAACAGGAAT AGAGTTATATTCACTTTATTCTCTTTGTATACAATTCTCAGGTGCCTGAGTAGCCTAACTGTTTGCAGCTTTAGCCATTA TAAATTATGAGCTTGTTAAGATGAATTCCTTATGATGGCTGCTTTTACCTAAATATTGCTAATTACTGCATCTTTTTTCC TTACTAAATGATTTTAATATCTCCTACAGATACTTATCAGCCTTGATTTCACAAACTTTCTTGGACATTGGTTCTGTGTC GAGAATACTGGATAGCATCATGAAGCTTTGCCTGCAATTTTGCTGGAATATTGAGAACCAAGATGATAATTGTTCAAATA CTTCCGAGCTTGCACATATAGCTGAGGTGATGGTGCATTGCTGGTTTTAACAACTATACACGCAGGGTTTTCTTCTCATT CAACTTCATATACTAACCTTAGTAGGCTCAATTTAATTAAGAGAAAAATTAACACACTAATTTAAAGTTCATTGCATTCA TTCTATCATCTATGTCAAGTGTGAATGACTGAATGCCTTATTCACAGTGATGTATTATGAATAGCTGAATAAAACTCCGC ATTCTCCACATAATTCTTTATGACTTAGTAATCATCGATAAGGGTATAAAGATAAATATGGGAATTCTGCAATTGTTTGT GCCTCATAACTAGACACACTGAATTGACTTTGCGGAATTGTTGAATGGAGTTATTAACTTATTGACAATGTTGATTATAA ACTCTTGAATAATATAGTTGGTGTTAAGAAAAAGCACCGTAAGGTTGCTTCCTTATAGTTTTGTTTCCCACAAGCGACAT TTTTAAATGCAAATGATAGGAATCGACCTCAAGTTGATAAGTCTATGAGAGGAGGCATTGGTGAGAAGTAGAGGCTGCTG AGTTAGTTACACTGTCAGTTGCAATTCTATCAAACAAGTTGTTTTTCTGTTTGGCTGAGTCATGATTCAGTCAGTTAGTA AATAAACAGTAAATATTGTGAGGGCCTATTCTTGCATCTTCTTCTCAGGATACCCATTTTTGTTAGTAGTATCTTGTAGA GTTCTTGATATCACTAAAACAGAGCCTATTCTTTTACCAGTTCTATCAGAAAAGCTAATAGAAAATGGAAATTGATACAG AAATACTTGAGTTGTCCTTCTATTTCACTTCAAATATCTGAAGTTCTGCCTCACTTAACTGAATAAACAAGAAAAAAATT TGAATATTTATGTGCAGATTTGTATTTCAATGCTGTGTGTATTCTGTATTGTATATTTTAGAATTGTCTATGTCCCTTGC GTAAATTTATCTTTATGACTGTTTATTTATCATTTTTATGTTTTCTTAAATTTCTATAGGAATTCAACAAGAAATCGAAT TCCCTGTACACTATACTGCGCAGCAGCAGGCTTGCAGGAAGTCAGCGAGCTCCATTTTTGAGACGATTTCTCTTGCGGTT AAACTTGAATTCCTTCTTTGAGGTAAAACAGTCAGATAGATACTTATTGTATGTTTCTCTCAAAATCAACTCTAACACAA AAGCTACTCATGTGAGTTTCTCACGCGGTTGATTTTTGCTTCCCATGTAATTGTTGAAAGTGGTTCCAAACATGCTATTA GTCTTACAGTTTATATTTTTTTCGATTGCAAGTGGCTTACTGTCTGTTCTTTTACTCCTTAACAGGCGACTGCAAGGGGG GTGCTGAATGTAGTGAGACCCCGCCCTACGCTTCCTGTTTTAAATCAACAGTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0250000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGCGTGTTAGAGAACATATGGCATTCTTGATCAGAAATCTCCAATTTTATATTCAGGTGGATGTGATAGAGTCTCA ATGGAACATTTTACAATCTCACATTCAAGATTCTCATGACTTCACAGAACTTGTGGGCTTTCATCAAGAATACTTATCAG CCTTGATTTCACAAACTTTCTTGGACATTGGTTCTGTGTCGAGAATACTGGATAGCATCATGAAGCTTTGCCTGCAATTT TGCTGGAATATTGAGAACCAAGATGATAATTGTTCAAATACTTCCGAGCTTGCACATATAGCTGAGGAATTCAACAAGAA ATCGAATTCCCTGTACACTATACTGCGCAGCAGCAGGCTTGCAGGAAGTCAGCGAGCTCCATTTTTGAGACGATTTCTCT TGCGGTTAAACTTGAATTCCTTCTTTGAGGCGACTGCAAGGGGGGTGCTGAATGTAGTGAGACCCCGCCCTACGCTTCCT GTTTTAAATCAACAGTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0250000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWRVREHMAFLIRNLQFYIQVDVIESQWNILQSHIQDSHDFTELVGFHQEYLSALISQTFLDIGSVSRILDSIMKLCLQF CWNIENQDDNCSNTSELAHIAEEFNKKSNSLYTILRSSRLAGSQRAPFLRRFLLRLNLNSFFEATARGVLNVVRPRPTLP VLNQQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19302:SF27
1 149 149 2.0E-56 –
PANTHER
PTHR19302
1 149 149 2.0E-56
IPR007259
Gene3D
G3DSA:1.20.120.1900
1 141 141 8.8E-41
IPR042241
Pfam
PF04130
2 142 141 4.2E-26
IPR040457

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000226
Biological process Microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
Subterm of
GO:0000922
Cellular component Spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
Subterm of
Part of
GO:0005815
Cellular component Microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
Subterm of
Part of
GO:0007020
Biological process Microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
Subterm of
Part of
GO:0043015
Molecular function Gamma-tubulin binding Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0250000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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