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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0250200 |
| Transcript ID | LotjaGi5g1v0250200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sodium/calcium exchanger 1; TAIR: AT2G47600.1 magnesium/proton exchanger; Swiss-Prot: sp|O22252|MHX_ARATH Magnesium/proton exchanger; TrEMBL-Plants: tr|V7BEQ2|V7BEQ2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0250200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55875024..55880824) extracted from Lotus japonicus Gifu genome v1.2.
GAATCATTCAGTTTGAAGAGAAATAATTTTTTTATTTCAGAAAATTATTACTACATTTTACCACGGAAGAAGAAGCAGAA GCAGAAGCGGGCCATGCAAACACGTTCTATAAAGCTAATCCAAATCCTTCGGAGTAACCAAATTCGTTAATGCCGCTAAA ACCCCCTCCGATCTGCTCCGGCGAATCCCCCCTTCGCCGGTAATTCTCCGATCTCTTTCCCCTCTCCGCAATTTCATTCA GATTTCCAATCCCTTTTCTCTCCAATTTGATCTGCTCTGTTTGCATTTGCACAATTATTTTTAGATTATCTCTTTTTCAG AATCTGCTCAATCATTGCGTTGCGTGCTTCATTACTAATTTAGCAAATCTTGTCGGAAAACTGAATACTGATACTCATTC TACTTGCTGTCAGCTCAATTGATAATTGTTCTATTCTTCAATTCAAATCGATAACGCGTTTTTTTTTATAGGCAAATGTT AGTGGTAATTGTTAGTAAATTAGTTCATTCGCCAGGGTCCCTTCACCCTGCAAATCCCTTCATTTCCCATAGCTCACCAA ATCGATAACGTGTTGTGTATGCTCAATTTTCAGTTTGTGTTCTAATAACTCACTTATGTTATCAGGTCAGGTGAATTTTT ACTTGTGAACTGAGCTGCAGGTTGGAGTGATTGAGATTCTGTTGGATTTTGGCCAAGGAAGGTTGAGAGAATGGCTGGGA TTTCCAGCATAATGGGGCATGAGAAATGTCAAAGATACTTAATTTTTAATGCAGAAACTGCTCTTGGGGATTATTTTCGG GTGTTTTTGTATTTTCTTGGCCTTGCCTATTGTTTCCTTGGATTATCGGCTATAACGGCCCGATTCTTTAAATCTATGGA AAACGTAGTTAAGCACACGAGGGAGGTAGTTGAGGTTGATCCTGTTACTAAAATTGAAGTGATTAGACATGAGAAGGTTT GGAATTACACGATCGCGGATATTAGCTTGTTAGCCTTTGGAACTAGCTTTCCTCAGATATCATTAGCCACCATTGATGCT ATACAAAATCTGGGGAACTTGAATGCTGGAGGTTTGTGTTTCAAAGCTTTTGTTCATAATATTAGAATCAAGTTTGATTT GTTTCTCGATTTGCATCTTGGTGGATTTGAAAGGAAATATATCAATAAGTAGTAGGTTTTACAATAAAATATGTCATTTG ATCCATGTAGTTAACTTCGTCTGGTGGAGAAAAAAAGCTCATGTTGTTGTTGTTGCTGCTATGAGTAGTAACTTTTGTCA CTGTTTTTCATGTTCTTAATCATATGTCTGTCTATTTTAATACTTGCTACTTTTTACTGATAAATTGCATTTATTTGGTC AGTTTAGGTAGGCTACACTTAGAATATTGATAGGACAAAAACCTTGAATTCAGTACATTTTTAAGTATTCTCTTCTTTCC TTTGTAGTTCCCTCAAATGGCTAAACAAGTGTTGATAGACTAAGCAATTGATTTCTCATTATTTTACTTGTTCACTTATG GTACTAACCTCTGTAAGAACTTCTGACTATATCTCTCGGATTACTATCTATTATGTACCGGCAGTACCACTTGATACATG TTTGCATGCGTAAATTCATATATAGAGTTAAAGTTACATGATCATTTTAGCTTATGTTGGAAAGATTGGTAATTTGTGTA TCAAGTGGAATATATAAATGAAATTTCAAAGGTACAAACTACAAAGGTTTTCGAAGGGGTATTCTAACAAGATGCATTTA CTCTACAAAATTTGATGCTGCAGTTCTAGTATTTGTTTTATTCTGATCTTCAATTATGTTTTGGATTTCTTGACAGGCTT TAGACTTTTAAGCACAATTTTGACTCTAACTCTGCTGAATATTTCAGGTTTGGGACCTGGAACACTAGTTGGTTCTGCAG CATTTGACCTTTTCCCCATCCATGCTGTTTGTGTGGTAGTTCCGAAAGCAGGAGAACTAAAAAAGATTGCTGATCTAGGA GTATGGCTGGTGGAGCTGTTTTGGTCATTTTGGGCTTACATTTGGTTATACATTATTTTGGAGGTAGTATTTCAACATTC TTATGTTTGAAACATCTTAAGTTTGTACTAGTCACTACCTTCTTATTTTTGATAACTTATTTCTGGATGTGCAACAACTA TAATCTGAGCCCTCACTTCTCACAAGAAGCCTGCTCTCCTTAGAAACATTTAACCTACACAAAATTCAGACAGAATAAAA AAAAACTTCTGAGACTGTCTCTCACCTTCAAATAATGTCAAACGTGGTTGGTTTTCATGGCCAGTGTCCATAAGTGTGAA CAATTATAACCCAAACATATGGTTTGATAACTTTTAATACAATTACAAGTATTTAAATGTCAACACAAATGATCTTGTTT ATCTGCATCATTGCTTTGTTTGTTGTTTAATTCTTGAACATTCTTTTTGTGTGGAATATTCATCAAGAAGCTAAATGTAG GTATGGACTCCAAACGTGGTGACTCTATGGGAGGCCTTGTTGACTGTTCTGCAGTATGGATTATTGTTGACTCATGCGTA TGCTCAAGACAAACGCTGGCCCTATATTTCTCTACCTATGTATGTGCTTCTGTTTCTCTCTATTTGTTATAATTAAAAGA TTAAGATTTATTATCCTCTTGAAATTTGATCTTTCTAGTCCGACATTTCATTGTATATTTGAAGTGCGAGAGATGAGAGG CCAGAGGATTGGGTGCCAGAAGAGACTCCTTGTTTTAAACAAAAATCCCATGAGAAGGTCGAGTACTCTGAGATAATTCA AGTTAATGAAGAAGATAGGGACACTGTTGATATTTTTTCCATTCATTCATCAAACCCCAGAGGTAGCTGTCTAACTTAAT GTAATTATATTTGGCTTTTCTTACAATGTTTTCTTCTCCTTAAACAGTTTGCTTATCGTGAGAAACATTCTGAAATGTCA TAACCATCTCGTGTCAAATTATTTATAATTTGCATTTTGCAGATACAACAATGTACACAAGAGTACCTCAAATAGATGGC ATTATAGAAAATTCTGACAAAGCAAAAGACTCAATGTTGGAGGATACCCATTTACTTACAATTTGGGGACAGCAATTTGT GGATGCTCTAATGGTACTTCATTTTATAATTCTTGTTATCTTAAAGATTAATCAAATTTAATTCTATTACCAATTTACCA TACAAAATTATTGAAATATTTGTATTCTAGGACATGAAAATGTGAAAAGTGACATGGTCATATTGTTCTATTATTAGGAA GTCTAGAAGCAGTATTCCCCATTACTGCAACTTTTTCTGCTTCTTTGTTGGGACTGGCTCTCGTTTATATTTCTTTGCGC TATATTTTCTCAAATTCCAATGCTGATATCACAGATTCGAGAATAATAACAACCATAACCAAGGCTTACTCCATTCATTT GGGTCGGATACTTGGATCAGTTGATGCTGTTGACCTCTCCAAAACTAATTTTTTTAATAAAACTATTTAAAGCAGGGACT ATCTTAGATTCATGAACATTGTTAGTAATGCTGCTGTCTGGTAGTTTTGTTGATATGAAGGCTTCGGCCTCTTCTGATAT TCTCTTGTGATAATACAGTTGATCTTCTTATACTTACTCACCGCATAAAATGTCACTAAACACGCTTTTTTTGACATTGT GAAGTATAAATTACTTATTATTTACAAAATTATGTCTATAGTAATATTAGTATAAAATAATGTGTTCCTGAATGAGTTAT ATGATTATTTACTATCAATTAATTCACTCTTTTAACCATGAAAATGTCGGAAACTAATTGAAGACAACAGCAGAAGCAGT CTTTTCCCACTGGGTGTATAGGAATTCTAATGAATAAGAGTTCTAACAATATATCGTCAATTTCTGATGACCGGTCTGCG ATTTCTTGATTCTTCTACAGTTGGAGAGCCATGAATCTAAAAAAATGAATAATGTCTATCTCCGCATAGCTCAAATTTGC TGGCAATTGCTGCTTTTACCATGGAGGTTTCTGTTTGCTTTTGTTCCTCCATGCCATATTGCTCATGGATGGATCTCTTT CATTTGCTCTCTGCTTTTCATCAGTGGGATAGCTTACATTGTGACTAAGCTCACAGACCTTATAAGTTGTGTCACAGGTT TTCTTTCCCACTCAATGATATTCCAGTTCACTTTTTAACACTTTTAACAGGTCTAAAGTTGGCTTGTTAGTTCTGCATAT TTTGATTTCATCTGTTTCCCCCTTTTTGACAGGAATAAATGCTTATGTCATTGCATTCACAGCACTAGCCAGTGGTACCT CGTGGCCTGATTTAGTGGCAAGCAAGATTGCTGCTGAACGTCAAAAAACTGCAGATTCTGCAATTGCAAATATCACCTGC AGGTCTTCATCTCAATATAAGTCCTATTCTTGCTTTAGGACATGGTCACATGTCATCATGATCTTCCTTAAATCTTTACT TATGGAGGTTTTTGGAAGGAAAGGGAAGGGAGTGCAAGATTTCCAATCCTAATAAACATTTTTATTAAATATCATTCAAT ATGTACGGGGGAACGCCCAATAATGCAGAAATCTTAGGTGTTCAGAAAAAATGTCAGCAATGAATTCTATACAACAAAAA AAGTTATTTGCTAGAATTACACTCAAATTTCGACATTTTGTTAGATGCTTTTACTCTTTCATTTTACACCCAACTGAATA CTTTACTTTTGAAGCATGGATGAAACATGAAAGTCTAAGTTATTTTATTGGCTTCCCAAATCATTATTGTTTTTAAGAAG AAACTATATAGAATTGGTTGGCTCAAACTAACCTAGTTTTTATTTTTCTTTTTGCAGCAATTCTGTGAATATATATGTTG GCATTGGTGTTCCATGGCTTATTGATACTTTGTACAACTTCATAGCATATAGAGAACCTCTCCATATCCAAAATGCAGGG GGACTAAGCTTTTCATTGATTGTTTTCTTCTGCACTTCTGTTGGGTGTATCTCAGTTTTGGTTGTTAGGCGTCTAGTTTT CGGTGCAGAGCTAGGAGGGCCAAGGCTCTGGGCATGGATTACCGCTGTGTTCTTCATGTTCCTGTGGATTATTTTTGTTG TACTATCTTCACTCAAGGTTTCCGGATTCATTTAGAATTATATTCCGGAAACGTTTCTAGTCACTGTAATATATTATGTA GATCTTTAGCCATATCTTTGATGCTTTGTGTTTCTCCGGTGCCCTCTCCAGTCCTCATTGCTCCTCTGCCCTCCTAAAAG GCCATACATCTTCCTTATCTTTTACTGTTATTTTTCTTTCTTTTCATGTATTACACACATATGTTAGGTTTGATTTTTTT CCTTTTTGTGATTTATCCACTTAAACATGTTGTATTAGTCTTGGTTGTACTTCAATTCTTCAAACTTCTATGAGAGGGAA ATTTTTTTCAATGCTGCAGTAGTACACATTCCCCATTTAAAATTAAGCACCTGGCATAATTTGAACATTCATCTTTTTCT TTTCCTAACGAAGTGGTACCTGAGCTTCTTTTTGGGGCTAAGTTTAATGTCTAAAAAATTTCGATTATCAAAGAAGTCCT CCTTTCCGCCTTTGTGAGCGTGTAATAGGCGACCATTTCGCGCGGTTCGGGGGGCACTTGAGTCAGCCGCCGGCGCCCTG TTTCAGTTATTTTGATTACCAAAGAGAACTATGATAATTTGTGTCACGCATAAAGAAGGTCTTACTACATTTTCAATATG CTTGAGAGGTTGTGGAGAATAGTTATATCTAAAGTGAGAAT
CDS sequence (LotjaGi5g1v0250200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGATTTCCAGCATAATGGGGCATGAGAAATGTCAAAGATACTTAATTTTTAATGCAGAAACTGCTCTTGGGGA TTATTTTCGGGTGTTTTTGTATTTTCTTGGCCTTGCCTATTGTTTCCTTGGATTATCGGCTATAACGGCCCGATTCTTTA AATCTATGGAAAACGTAGTTAAGCACACGAGGGAGGTAGTTGAGGTTGATCCTGTTACTAAAATTGAAGTGATTAGACAT GAGAAGGTTTGGAATTACACGATCGCGGATATTAGCTTGTTAGCCTTTGGAACTAGCTTTCCTCAGATATCATTAGCCAC CATTGATGCTATACAAAATCTGGGGAACTTGAATGCTGGAGGTTTGGGACCTGGAACACTAGTTGGTTCTGCAGCATTTG ACCTTTTCCCCATCCATGCTGTTTGTGTGGTAGTTCCGAAAGCAGGAGAACTAAAAAAGATTGCTGATCTAGGAGTATGG CTGGTGGAGCTGTTTTGGTCATTTTGGGCTTACATTTGGTTATACATTATTTTGGAGGTATGGACTCCAAACGTGGTGAC TCTATGGGAGGCCTTGTTGACTGTTCTGCAGTATGGATTATTGTTGACTCATGCGTATGCTCAAGACAAACGCTGGCCCT ATATTTCTCTACCTATTGCGAGAGATGAGAGGCCAGAGGATTGGGTGCCAGAAGAGACTCCTTGTTTTAAACAAAAATCC CATGAGAAGGTCGAGTACTCTGAGATAATTCAAGTTAATGAAGAAGATAGGGACACTGTTGATATTTTTTCCATTCATTC ATCAAACCCCAGAGATACAACAATGTACACAAGAGTACCTCAAATAGATGGCATTATAGAAAATTCTGACAAAGCAAAAG ACTCAATGTTGGAGGATACCCATTTACTTACAATTTGGGGACAGCAATTTGTGGATGCTCTAATGTTGGAGAGCCATGAA TCTAAAAAAATGAATAATGTCTATCTCCGCATAGCTCAAATTTGCTGGCAATTGCTGCTTTTACCATGGAGGTTTCTGTT TGCTTTTGTTCCTCCATGCCATATTGCTCATGGATGGATCTCTTTCATTTGCTCTCTGCTTTTCATCAGTGGGATAGCTT ACATTGTGACTAAGCTCACAGACCTTATAAGTTGTGTCACAGGAATAAATGCTTATGTCATTGCATTCACAGCACTAGCC AGTGGTACCTCGTGGCCTGATTTAGTGGCAAGCAAGATTGCTGCTGAACGTCAAAAAACTGCAGATTCTGCAATTGCAAA TATCACCTGCAGCAATTCTGTGAATATATATGTTGGCATTGGTGTTCCATGGCTTATTGATACTTTGTACAACTTCATAG CATATAGAGAACCTCTCCATATCCAAAATGCAGGGGGACTAAGCTTTTCATTGATTGTTTTCTTCTGCACTTCTGTTGGG TGTATCTCAGTTTTGGTTGTTAGGCGTCTAGTTTTCGGTGCAGAGCTAGGAGGGCCAAGGCTCTGGGCATGGATTACCGC TGTGTTCTTCATGTTCCTGTGGATTATTTTTGTTGTACTATCTTCACTCAAGGTTTCCGGATTCATTTAG
Protein sequence (LotjaGi5g1v0250200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGISSIMGHEKCQRYLIFNAETALGDYFRVFLYFLGLAYCFLGLSAITARFFKSMENVVKHTREVVEVDPVTKIEVIRH EKVWNYTIADISLLAFGTSFPQISLATIDAIQNLGNLNAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKIADLGVW LVELFWSFWAYIWLYIILEVWTPNVVTLWEALLTVLQYGLLLTHAYAQDKRWPYISLPIARDERPEDWVPEETPCFKQKS HEKVEYSEIIQVNEEDRDTVDIFSIHSSNPRDTTMYTRVPQIDGIIENSDKAKDSMLEDTHLLTIWGQQFVDALMLESHE SKKMNNVYLRIAQICWQLLLLPWRFLFAFVPPCHIAHGWISFICSLLFISGIAYIVTKLTDLISCVTGINAYVIAFTALA SGTSWPDLVASKIAAERQKTADSAIANITCSNSVNIYVGIGVPWLIDTLYNFIAYREPLHIQNAGGLSFSLIVFFCTSVG CISVLVVRRLVFGAELGGPRLWAWITAVFFMFLWIIFVVLSSLKVSGFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 4 | 529 | 526 | 1.9E-223 | – | |
| PANTHER | 4 | 529 | 526 | 1.9E-223 | – | |
| Phobius | 31 | 53 | 23 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Pfam | 34 | 206 | 173 | 5.2E-29 | ||
| Phobius | 54 | 156 | 103 | - | – | |
| TMHMM | 157 | 176 | 20 | - | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| Phobius | 177 | 187 | 11 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 188 | 207 | 20 | - | – | |
| Phobius | 208 | 326 | 119 | - | – | |
| Gene3D | 324 | 525 | 202 | 2.3E-9 | – | |
| Phobius | 327 | 350 | 24 | - | – | |
| TMHMM | 328 | 350 | 23 | - | – | |
| Phobius | 351 | 355 | 5 | - | – | |
| TMHMM | 355 | 377 | 23 | - | – | |
| Phobius | 356 | 375 | 20 | - | – | |
| Pfam | 358 | 521 | 164 | 1.8E-22 | ||
| Phobius | 376 | 381 | 6 | - | – | |
| Phobius | 382 | 402 | 21 | - | – | |
| TMHMM | 382 | 404 | 23 | - | – | |
| Phobius | 403 | 435 | 33 | - | – | |
| TMHMM | 424 | 446 | 23 | - | – | |
| Phobius | 436 | 455 | 20 | - | – | |
| Phobius | 456 | 466 | 11 | - | – | |
| TMHMM | 467 | 486 | 20 | - | – | |
| Phobius | 467 | 489 | 23 | - | – | |
| Phobius | 490 | 500 | 11 | - | – | |
| Phobius | 501 | 523 | 23 | - | – | |
| TMHMM | 501 | 523 | 23 | - | – | |
| Phobius | 524 | 529 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0250200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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