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LotjaGi5g1v0250300.1

Overview

Field Value
Gene ID LotjaGi5g1v0250300
Transcript ID LotjaGi5g1v0250300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 60S ribosomal protein L22, putative; TAIR: AT3G05560.1 Ribosomal L22e protein family; Swiss-Prot: sp|Q9M9W1|RL222_ARATH 60S ribosomal protein L22-2; TrEMBL-Plants: tr|I3SBV7|I3SBV7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0250300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:55886444..55893753) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCAAATCGCCTTAGACGTACATATAGGCAAGGTCACATGAGCTTTCTCTCCCGCTGAAACTAAAAGTGGGGTATTTC TACAAATGCAAAGGTAATTTTGCAATTTTACTACGAGGAGGGACTAAAACTAAACCTCACTCAATATTTAGGGATAAAAA ACATAATTAACCCTAACCTATATCTTTCCTAATTACTAAACTATGAAGTCATATTTCTACTAATTATGGTAACTAAATCA CACAACACTCTCATTCAAGTCTCGAACCCGCTTTATAGGAAGCCCCTTGGTGAAAAATTCTCCTAATTGAAGTCATAAGG AAATGTACAATGTGGTTGTAAGACCATGATGTGTGTGCATTTTACATAGTATTTTTGTCTTGTTTAGTGTTATCATGTAT AAAGAGAACCTCAACCAAGACTAAATTATTCTAAACACATAAATAACAAAAAAAAAATACAATCTTTGAAAACTACCAAA TAGCAAAGAATTTTGCTTGTTGATGTCTTCCAAGAAACCTGGATCAAATATCTCTGCCCACGGTTTCTCATGTCATTTTA AGATGTTCTGGAGTAGTCAGCTGCAGCACAAAAAGCAGAAACAAAACCTGTCATTCCAATCACCTGCGTCCATTTCCGTG TCCCGGCAGCAACAGCAACAGATGCACCTGCCACAGCTCCCGCAATCAGACCATTGACCTGTTTGGGAGTTTATTTTGCA AGTAATTTTAGCAACTCGTTGATCCATTTTTTTTGTCCATGTCAAATGCATAAATATGCAACCACGTAAATACATAAATC TAGCACACACGATTGTTCTAATAAACATGCTTGGTCTTCAAAACAAAAAAAAAGGTATTCCAGGTTTCTAAATGAATGCC AAAGTTGGCCCCAAAACAACTACATATAGCTAAACACCAAAATTCTGATATTGAAACAATCCATAGAAGTGAAATTACAA GTTCTGATGGCCATACAGGCATGCAAAAAAAAAAAGTTGATAAATCAACACAAATTGGGCAAGCAATGGTGTATTTGTTT ACAACATTTTAAATGCAATGCCATGGAAAGCCCATAAACACAATTCAATACTCAAGTCAGTCCAAGAGCTCAAAATTGAA AAGTACAGGCAAAGAAGAACATACTTGGGCACCTCTTGGTGCATGCATATATAGGGGGTCAATTCTCCTGAGCAGGCAAT GGATGTCTAACTAGTTAGTTCCAATTTCAATATAGGTCTTAATAGTTATTCATTTGTTGGGTAAAGGACACATGAATAAT TATATTTCTAACAGATCCCATAGAATCTTTATTCAATTGGTCTTACCAGAAGTACAAATTCCATTTTCCTGAACTATCTA TAAAGAACAAAGTCTAAGCTTCACTGAAGATCTCAAATATGTAAAAGAACGACTAAGTTGCTCTTGCAACGCACACAATA CAAGAACATCACAACACAAATCTACTCCATTGAATTCTGAAATTAAACTGAACTGTAAACAAGTAGGAACATCCAATAAC TGCAGCACTAACTAACAATTCATCTACAACAAAGTAAACTAACTAACAAATAAACCTCACTAACAGACTAACATTAAAAA TGAATTCCTCAATTTTCTGACGCCTATCACTGAAGTTCTTGATTAGTTGAAAACAAAGGATTAAAGAGAAGGAATTGATT AACTAACCCAATCATCTTGCCTCCTGTATTGCTGAATCCTACATCTCGTAATGCTGAAAACTCCAGCTACAAGTCCTAAA ATCCCAAATCAATTAACATCAATTCTACAAAGAAAAACATCATTACAAAGCTCAAACATCATCACATCATGTTATTCAGA GTTCAATAGTTCAATTACCGCATCGAATCCCAAACTTGCCGACCGTGTTCGCCTATTCTCAACAACCCAAACTAAACCAT CAGCTCACAGAAAACCCTAGCACCAGTTTTGAATTCAATACACTACCAAATTGAAAAAAAGGAAAATCATGTACCACAAA AGAAACTCGTGGAATGCCAGTAAGACCTGCATACAGAACTTGAAGAGATGAAAATCCACAACTGAGAATAGAAATCACTA CAAGTTTGGATGCATAAGAGAATTTTACCCTGTTGACGAGCTTCATAGGGACCATAACACAAGCCCCAGATTGCACCAGC CTGAACAAGAAGAAGACGAAGTAGAGGAGAATGAGAATCAACGGTGAATGAAGAAGCAGAGGAGAATGAGAATGAACGGT GACTCACCGTTCCGACGCGGAGGCTAGACTCGACGGCGAGGGAGGAGCATGGAACCACGTTGTTGAGGTCTTCTTCCATC TTTCTCCCTGTATCAGAGGGTAGCGAGAGTCATTTGACATAATTGGGCCTAAGCCCAGTCCAAAATGAGAAAAGCCCATT TTCTTCAAACCCTTTGCTTTATGAAGTTGCAAGCAAAACCCTAGTTTTTTGTTATCAGAAAGAAGGTGTAGGAGGAAGAG TTGCAGAGTGAGAGAGAGAGAGGTGCGAAGATGAGTGGAGCGAAGGGGAAGAAGAAGGCGACGAGCTTCGTGATCGATTG CGCGAAGCCGGTGGAGGATAAGATCATGGACATCGCTTCCCTTGAGAAGTTTCTGCAGGAGAGGATTAAGGTCGGCGGCA AAGCTGGTGCGCTCGGCGATTCTGTCACTGTTTCTCGTGAGAAGAGCAAAATCACCGTCACCTCCGATAGCAACTTCTCC AAACGGTGAGGTGATTTTCGTTGTTGTATTGATTTGAAATGTTGTTCTGTTAGTTGAGATATTTGAGCTTCTGATTAGTG TAGTAGATTATGTACTCTGTTAGAAGATAGTCGATTAAGGCCCTGTTTGGAAGAGCTTATTTGAACTTAGAGCTTATGCA GTTTTGAGCTTATTCTCATAAGTTACTCAGGATAGCTTATGCTTATACCATCTTTTAAAGCTGTGACTAATTGGGATTAG GACTTTCTTAAGTAATTTGGTATCAATGGAATGAGGAAAGTGTAAAAGATTTGATGCTTTGATCATGGTGGAACACACTT GAATTACTGTGTCATACACGATTTAGAATGTGATTTATGTTATCAAGTTTATGTTTTGAGTTCCTAGACTTCTTACTAAC TTGTCAAGTTTGTTTGAGAGGGGAGGAATGAATATAACTAGGTTTAGGTGCTAGCTAGTTATCTTCTCAACTGTTCACTA AGCTTCAATTCTTCTGAGATGGTAGTAGTAAATGCTAGTTAGAGCTGGTGTTGGCTTGAGATGTTTTCATGCATTGAAAT TGAGAGAGGTTTCTGTATGAACATTGGGTTAGTTTGAGCCATTTTGGAAGAGATGGTTGTTTGTTGACATAAGGTGCCCC TTCTTTCTTAAGATACCAGTGAGTTCTTCCTTGATTTTGCTGTAGCTGAGGTTTCTCTCTTGCTTTCTGCTTTTTCTAAA AAATTCCTATTTTGTAGCAATAAGTTTTGCTCTGCTGTGATGGATTGCATGTGGTAATAAATTTAAATTTCATTGCCAAA GTTTTGGAGCTTAATTGTTAACAATTAAGTGATCATGACTCTTGTGAGTCTTCTTCTAATGCGCACTTAGACAATGCTGT GAGTCGGAGCAGTTATGAATTGGACTGGTTTCCCAGCTTATCTTTAGCTGGTTTTGTCATTTATTTGTTACTTCACATTT GTTTCTTTGTAGCTGAGTTTTCCTATAGTACTAGTTGTCTCTTCTCTGGTATTTCTATCTACTTTGTTTGATTTTTTTTC CCATTGAACCTTTCTCAGGTATCTGAAGTACTTAACCAAGAAGTACTTGAAAAAGCACAATGTGAGAGATTGGCTACGTG TGATTGCCTCCAACAAGGACCGGAATGTCTACGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAGGAGGAAGAC TGAAGATCTAAGACTCTGTCTTGAGGCATTATCCATTAGGTGTAATTGTTGCGGAAATTGCTTTTAATCTATGTTATGTA TCGACTTTTTTCTGGTTGTTTAAATTTTCATTGTGAACCAATGTTATGCCATAGAATTCAGATACACAGTTCGCATCTTA CATGTTGGGATTGCTATCTTTTATTTGGTCACTATTTACTAATTACAGCAGGAGATATGTTTGAGTTTTTTCTCGTCTAA TGTTGCAAGAAATTGCATTTGATGTGGATGATAATTACTATAAGTTCGCATCTTAGATGTTTCTTCATGATTTTTCCCCC CACAAGTTGGAATCTTAAATCCGTTAGTGACCTTAGCAAAGGGGAAATTTAATTCTAGGAACAAATTAAGACTTGATGGA TTTTTTTAATGAGAAAATATAAGGGCCTGTTTGGTTTGGCCATTTTCTGTTTTCATTTTCAAAGAAAACAGAAAATAGTT GTGAAAACGTGTTTGATTAAAAATTTGAAAATATTTTCAGAGAAAATATTTCCGAAAATGGGTCAACTTTTGAAAATAAA AAAAAGTCGTTTTCACATTTTCAATGAAAACGGAAACGAAATGATGAAAACACGCGGTGGCAGGGTTGTAATTATAATGA AATTGGTTTCTTTCTTTTCTTTTCGTTCTGAAGGAAGAAAGTGTGTGCCGGCCCTAACCTCTGCAAGTTCTTCTCTGCTA CCTCCTTCATCCCACAACCAAAGTTCTTCTCCTTCTCTTTTGTCTTCTCTTTTTTGAATTTTTGAAACGTGAAACTGGGT TCTCACCATGTTGCACTGTGAACCCTATTTTATGTCTTTTTTGGGTGCCATCTGATATGAACCTTATTTCTTGGTTACTC TATTTTGGGTGCTTCACTTGATGGGTTTTGGTTGATTTTGGAGCTAGTTTTTTCGGTTTGGTGTTTCAATCCATGTTTAA ACCCTCTATACTGCCTTCAAAATCTGTAAAACCCATGTTTTTTGGTTGATTCTGAACTCTATTCCTTGGCTGGTTTGCTT TTTATGCTGGGCTCCACTGGTCTTTTAAGATGTCCAGGCAAATTGCTCCACTTTGACTGCTGATATTAGGGTGTCTTCAA CAATTAACATACAACACAGAATCCACAGATTAACCAACTGGACATATATTTTTTCATAGTAATACATGTCATATGTGCTA TGCAAAAACACGTGATGCTGAGGCAATTGAAACCTTGGGTTTGCCATAGAACCTAGTGGCTTTATGTGGAGACTTGGCTG GTTGCATATTTTTCCTGTTTCTGTAAGGGCCCGTGGCTGCTATTTTTAAATTAGTAGGGGATTTGAATTGTTTTTGGTAT GGTGTTATGTTTCCTTTGTACAGTACCAGTACTAGATAGAAGTAGCTTTAGTATTCTTCCTTCTTTCTTGTTTTTGCTTT GTACATGGCTTAAAATACTCATAGTATTTCCATTAATTAAACTTTGGCTTACCAAAAAAAAAAAGGTTTACTTGTAGTAG GAACAACTTTGATGTAGGAATGCTTGCATCTTGGTTGCTTGTAGTTGGCTTTCCAATAATAGGTGCTGGTTCTTTTTCAG TTTTTGGGAATGCCTCCACCATGGTAAATTTGGTGGGGCTTTTGGTTTTGGGACTAGTAGGGGTGTGATGTATTACCTTT TCTTTTGTTTTGTTGGGGATTGAAGCTAGTGGCTGCATTTGGTTATTAACTTTTTCCAGTTGTTGTACCAATAATCTGAA TGTTATGGCATCCATATATATTGTCTCTTGTGCTTCTTTTAATTGTGCTCTGCAGGGTCTGTTTTTTTTACTTGCCTTGT AAGAGTCTCTTGTGCCCTTTATTAGTTTACTTGCTTAATATGAGATTATTTGCATAAGATGGGAGGAAAAACTGAGAAGG GGGAGAGCATGGAATGGACAACCCAAAACACAAAGATATTCATTGATATTATTTATGATCGAGTGAAAAAAGGGCAGCTG CAAGGGTCTACATTTAAGAAAACAATATGGGAAGAAATAAACATTGAGTTGCAAAAGACAAGTGGAGCACCCCTACCTGA TGGTGTAGAAAGGCTGAAGGGAAAGTTTAATCGGCTACGCCTTCAACATCGTGAATTTTCAACTTTGATATCTCGCACAG GAGTTACATGGGATCCTGAGGCTAACAAAGTGAATTCTCCTGAAGAAGTATGGGAAGAGATGTACAAGGTAAGTTTAACT TATAGAATATCATTATCATTGTTAAATTATCTTCTTCAATTATCAATGGCTTTATTGTGAAGACAAATCAGAGATGAATT TCTTAAAAAAGGAAAAAGAATTTGCTCTTGTATTGTAATATATATATATATATATGCATAGGCTAGTAGGCTACACAATT ATCTTGAACCGAATGAAATTTTGTTAATTATAAAATAAAAATGATATGGACTTGTAGTTGTGGTATATACTGCAAGTATA TGTACAATTTTAGTAAAAACTTATCATTGGATTTAGTAGTATATAGTTAATATATGTATATGGACTTGTTTTAGTAGTTA TTTCTTTTAACAAGTGAGCATGTAATTATAATCTCAACTACTACTGCTTTTCTTATGTATTTGGACAAGAGTACACATGT TGGGAAATATAATCATTGTTCTTTTTTTTTTCAGAAAGGAAAATTCTACAAGCAGTTTAAGAAACATGGATTTGAGCATG ACTATTATATCCTTGGTGAGATATTTAATTCTAGTACAGCAACTGGAAAGTTAAGTCAAGCTTCTACTCAAGAGCCACCA AACTCCGATGAAGAGAGAGAGAAATAGAGGAAGACTTTCTCTCAAAAGGTGTTCATATTGATTCTAAAGTTATTGATGTT GATGGAGAGGATCTGCAAGAAGTTAGTAAAAGGAGAAAAGTCACTAGGACTTCTAGTGAAGGTCGTCGTAAGGAAGCAAA AAATTCAAGGCTGGATGTGTTAGAATCAGCAGTGACCAAATGGTCTAACGCAATGGATGCAAGGTCAGATAGATATAAAA ATGAAGTTGATTCTTCTGCAGACGCATGCATTAAATTATTAGATTCCATGGATGGTATTTCCCCAAAAGTTTTCAGCATT GCCGTGGAGAAGTTTACAAATAAGGATTTGAGAAAAATGTTTATAGCAATGTCTTCAATTAGGAAAATGGATTGGCTAGG ATCTCTTGAGTAGTATCATTTAATTGATTCTAATTTTATGTTATTTTGTTTATGAGATTGAAGATCGGATTTTCTTGTTT TGTTTCCTTGTTAGTATTGAATTGCTATGATATGCGTTTAATGGGTTGACATTATTTTTTAGTATATGAATGTTTTCATA TTATTGATAATAATTAATATTATTATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0250300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGGAGCGAAGGGGAAGAAGAAGGCGACGAGCTTCGTGATCGATTGCGCGAAGCCGGTGGAGGATAAGATCATGGA CATCGCTTCCCTTGAGAAGTTTCTGCAGGAGAGGATTAAGGTCGGCGGCAAAGCTGGTGCGCTCGGCGATTCTGTCACTG TTTCTCGTGAGAAGAGCAAAATCACCGTCACCTCCGATAGCAACTTCTCCAAACGGTATCTGAAGTACTTAACCAAGAAG TACTTGAAAAAGCACAATGTGAGAGATTGGCTACGTGTGATTGCCTCCAACAAGGACCGGAATGTCTACGAGTTGAGATA CTTCAACATTGCTGAGAATGAGGGTGAGGAGGAAGACTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0250300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGAKGKKKATSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKITVTSDSNFSKRYLKYLTKK YLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.1360.210
2 119 118 3.8E-52
IPR038526
PANTHER
PTHR10064:SF19
3 119 117 2.9E-94 –
PANTHER
PTHR10064
3 119 117 2.9E-94
IPR002671
Pfam
PF01776
8 117 110 1.8E-47
IPR002671

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0250300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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