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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0252500 |
| Transcript ID | LotjaGi5g1v0252500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation-efflux pump FieF; TAIR: AT2G47830.1 Cation efflux family protein; Swiss-Prot: sp|Q8L725|MTPC1_ARATH Metal tolerance protein C1; TrEMBL-Plants: tr|A0A072VN24|A0A072VN24_MEDTR Metal tolerance-like protein; Found in the gene: LotjaGi5g1v0252500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56127842..56134490) extracted from Lotus japonicus Gifu genome v1.2.
CGATGACACGTGTCCTATTCTGTATAGTTGCATTCTGTCTAGGTGGTACTGGTACAACATTCGATTCGATTCTGTTTGGT TTCAGAGTTATGCTCTAACCAAAGCGAAAAACCAGAACAAGTTCAGTTCAGAAAACCCTAGATTCTTGTTGGAAGAACAA AACAACACAACACGATGGGGTTTAGATTGAACCATCTGAATCCTATTTACAGAACATGTATCACAAGATCATCAACCTCT TCGAAATTCCTTCCCCCTGTTCTGGAATCAGTGAATTTCTTTCCACTGGAACCCTGTTTCGTTTCCCCTGAAAATCCCGC TTTCAAAATCCCCAAACGATGGCATTTTGGTCATTCTCATTCCCACGACGATCACCACCACCACCCTTACAATGTCAAGG AGGAAGGAGAGAAGATTTTCCGGCTTGGTCTCGCCGCTGACGTTAGTTTAGCCGTTGGTAAAGCCTTCACGGGCTATGTT ACCGGAAGCACCGCCATCATCGCCGACGCCGCGCATTCCGTATCTGATGTGGTATGTAACACTAGCTACACTTGGAACTT GTCTTTGCTCGTTGAAACAAGCAATGTTTCACCATTTTTTGTTGATGTTGTTGCAGGTGCTTAGTGGCATAGCTTTGTGG TCTTTTAAAGCTGCTCAGGCGCCTAGAGATAAAGAACACCCATATGGTCACTTCATTTGTATCTACACACTACTTTGTTT ATCTCTTGTGTTGCAAGTTATTGTTTACTAGCTTCTGCTTGCTAACTTATCATTCATTTCTAAGTGTGGGGTGGGATTAA TTTGAATATTTTTGGGTTTCTTATCAGTTAATTTGCATATAATGGTTTTGCCCTGTTATTTTGTTGTGGTTGTTCTTCGG GTGAGCATTCGTCTGTTATGTACTTAGTTTTTAAGGAGTGAAGGTCTACTTCCATGTCTTTTATGATTTTATCTGTCATT GTATCTCAGGACATGGTAAATTTGAGACTCTAGGAGCTCTTGGAATCTCTTGTATGCTTTTAGCTACTGGGGGTGGCATT GCATGGCATGCTGTAGATATTTTGATGGTATGGAAATGTATTCAAGCTTCAATTCTCTTTGTTGCTTCACGTATTCCAAT CAATCAATATAGTTTAAAGATTCAATGGAGCATTTTTCTAGACTATGCATGAAAATAGATCCTATGTCATCATCTTAATG CTTAGAAGTCATTGCTGTATATGTGCAGGGATTCTTCTCATCAGGTCCTGAAATGGTTAACCAGGCATTGGCACATGCTC ATGGTGGACATCACCATGGAATTGACATGGATTATCCTATCCTTGCTCTGAGTATGACTATTGTGTCAATAGGTGTTAAA GAAGGGTACTGCTATTACTTAATAATGACATGCATTAGGGTGAAGGTGTCCTAGCATTCTTGATGCCTACTCCAGCCACC TATGTCCAATGTCACTGTTTTATTTTAAGTATGCTGAATATGACTAATCCATCATTGGGTGCTATATAATACCTTCTAAC TTGAGTATAAGATATGAATCAGTAAAGGTTGATGCAATGTGAACTCAGTAAGGAAGATATGAAAGGATAATCACCAATGA GTAAACCTTTAGAGAATAAAGTTTACTTTCATAAATCCCTGAAAAAATAACTAAGCTATTGTAGTATTGTTCTATTTATG TTAGCCACTTAGCCCATGCTCTTTACTTTCCTAAGCCATGACTCACCATGGCATTAAATCCTTGACCTTTCCTCATTTCA ATGAGGTCTAAATTCAGCAGTGTTTTGGTTGGGCTTCTGAACACCAAGCCTTGTAATTTGATCTCATTCACTTCGATCTG GTCTTTTATTGATGCCTCTAATCTCTATGCTTTGATTAATATGTCTACTACTAGGATTTGTTTACTAGCACATGCTTTCT AAATCTGTAGGCTTTTCTGGATAACAAAAAGAGGTGGTGAAAAGCAAGGTAGTGGATTAATGAAAGCAAATGCATGGCAT CATCGTGCAGATGCAATTTCATCAGTAGTTGCTCTCATTGGAGTTGGTAAGGAACTTAGTTCTTTGATAGGTCACTAGGT CAGTTTTGGTATAATATGCTACAATACCGGCTTCTCTTACAAGTTACCTCACTAATCATGTTTACTTGCTTACGAGGCAT TAACTGGTGTGTTGTTGGGTTATGATCAATGATCAATGTGAATCACATATGCTCTGAATATTAATTGCTCCAAATTTTTT CTACATCTAATATAGCGTGTTCACTGTAAATAAATCCATCATTGATATTTAATTAACTCGTTTTGATTGTTTTCCCGTAC AAACTACAGGCTACAGTACATAATCATAGTATCTTCATTTTCATTATTTACAACTATCTATTAATGCATCATATTTTTAT ATCTGAGACCTTGTAGTAATTTTTTGAATATCCATCATCGATTAGTCTAAAGCTCGATTTTATAACTTTTATGTCATTCT TATCATTTGGTAGATCAAAGTCCATGGCCTATTTCAGGTTCACTCAGAGCTCTGGCAACCACCGTAGGAGGTCTGATGTA CATGCAATCATTTCATGAAATTTGACTCTCTTTCCATTTATTTCAAAATGTCTATGATCTCTTCCCAAAGAAAACATGAA TCTTTCGATTCATTTGGCTCTCACGCTCAATTACTTATAGGAAAATTCCCTATCTTTTTTATGTAATCAGCCTATCCTAT CCTCTATTCTCTATTTCAAAAAAAAATTGAACTTTTTAAATGGTGTTTGACTGAAATGCATGGACAGACTTCATTTTTAG TTTTTTTTTAATAAAACTCATTTAGTACCTAAATATATCCACCATCAATTATCCTTTTAAGGATTGATTTTATAAATTTT ATCTATATCAAATTGTGTTTGCCTGAAATGCATGGTAGGACTAAATATCTGGGATTTGAGAGGTTAAATTGCTAAAGTTA ATTCCTTGGGTGCTAAATTATAATGGGTGTTTCTTTCAGGACTATAAAATTGGTTTTACTCCCTTCCCCTTTCTGGCCCT TCATAATAATGCAGTCTAGGCCTGTTAAAAAATAAGAGTATCCTTTGTATCACATGCTTTGTTTCTGGATGCTCGATCCA TTTATGTTTCGCGCCTTGCTTCCATTCACTTACTGTAAATTTTCATCTCCATGTTAGGAGGGTCTATCCTTGGAGTGAAG TTTCTAGATCCCCTTGCTGGACTTCTTGTCTCGGGCATGATTTTAAAAGCTGGGGCTGAATCTGGTTACCAAAGGTCCAT TTTTTTATTTTTCTTCTCAACTTATCATTTCTTGCAAGTTTAATGTTTTATTTGTTACTGAAACCTTTTTCTTTACACTG GGTCAAGCACATTTTGGAAACTAAGTTAAACATATGGGATTTGGTGTGACCCTGTTAGATTTCTAAATTAGAGTCGGTGG GCCTGTTGTGTTTGGGCTTGAGTTTGGTTTTATCTGTTTGCTTTTGTTATTTGCTTTGGTATTAAGTTAGCTTGTATTAT TTGAATTGGGCCTACGGTTCTATCCATAAGTATCTATTGATAGAAAGAGAAAATTCTGATTATTCTTTTTTGTGTGAATT CAATCTGAGTAAAATGCATGGATTAAATGTCTTTGTTATGACAGCTCTCACAACAAACTAGTAATCTACTAACAAGCTAA TAACAGAAACAATTAGTATAAACACAAGTATGCTACTACATAAGAGCGAAAGGCCTAGTACATATCTCTATCATGCTGTT TTGACTATTTCCCAACTTGGCTCTAATTATCTTGTTGCTTTTGATCAATTATCAGTATCTTGGAACTGGTGGATGCTGCA ATCCCAGCACAGGAGTTGGTTCCTATTAAACAAACAATAATGCAAGTTGACGGCGTTAGGGTATTCTTTTCCAACATCTT TTTAAAATATTATTTTAACAAGATTTTATTTAATGCTCTTTTAAATATAAATATGTGAACTTGGGTGACATTGTAGTCTT TTACTCTTTTCAATTCATATTTCTTTTGGATTTCTTTATACAGGGATGCCATCGCTTAAGAGGAAGGAGAGCTGGTTCAT CTTTGTATCTTGATGTACATATTGAGGTTGGTTATCCAGATTTTCATATTCATCATGTGACATGCATTATGTGCCATGAA CTCATGATTGGACTACTTTATGTGTCAGACTCTAGGATTTACTTGTTAATTTTACCTTGCAGGTTGATCCTTTTTCTAGT GTTAGTGCTGCGCATGGCATTGGTGAAAATGTCCGTCATCAAATTCACAAGTCCCATCCAACTGTGACCGAAATTTTCAT ACACATAGGTTTGCTTGATAATTCTATAAATTTCTTACATTGGCCACGGCAGAATATTAGTTATTTGGTATCACATTTTT TTTCAAAAAGAAAAACTGAGTTAGGAGGACTAATAATCTAATATACAGATAGATTACTTTTGTATCTACATGAGTACCGT AGTACTGTTCCACTGTGTTAGGAGGCCTGTAATTAAAGGAGCATATACTAGGAGTGCTAAATGGGTTGGTACAGGTGTAG AAGAAACACCCAACAAGTCCAGTGGCAGTTAGCTGTCAGTTAGCTACGCTGGAGTTTTAGGAAGTTACTCGGTTATGTCA GTAGTTAGGAGAGCCAGAGAACCTCTCAAATTGTTCTCGATTGTATCCAGGGTATTATCTTCTTGTTCTTCACAGAATCA AGGAGAGGTACACCAGAAATTGTTGAATAAAACTACTGTTTCTTCTCCATTTTCATGTGCCAATCTAACACACTGCCAAA CTTTGCACGAGTTGTATTTGTTTGGGTTTAAAATTCTACAACCACTTTTCAGTGCTTGCAGCCTAGATTTATTGTATTGA CCTCAAATACAAGTTATGTAAAATACATTTAAAAGCTTATATAGAACGGACGTTTCTGTTAATTTATATATGCACAAGTC TAGTATATATTTGATTTTTGAAATTCATTCTGTCCATACCAGTCAACTTCTTCTTTAAGTGCTAGCATATGTAGAGAACA TGCTTAAGCTTGATGAGTGCCAAAAGGCAGATTCAAATGTGTTTCCATTTAGGTCAATGACTCTGTCTCACTTATTTCAT AGACTAGTGTGGTCAGTGGGGATATGTATGCCTAATTGTATATTCATACTGCCTTTACTTTCAAATTGCATCGTCTTGAC AGCTAAAAAAACCCTTATTCATATTCAGATGAGGTTTTCTGTCATCTAAATCACTATTTGTAGTGGATGTCATGAGTGCT GATATCTCACTAGGTTCTATCCTTTAACTCCAATTTTTTCTCGACTATCTTGTAGATCCTTCAATGTCACATGTTTCTAC CAGCACAAAAGATGAGCTAGATAGTTGTAGCGGAGACATGAACCTGAACAGAATTGTTCCTGTTGGGGGTCATAACATTG AGGGAATTGTTTCTGATATCATTTCATCAAACTTTCCACAGGTAAGAGATCTTTGATAGTCAAAATAAGCTTCAGTTCTG TATTTGTGTTCTGTATTTGTTAGGCATGGTAGATGTTGGCACATGACATGGAATAGGTTGTTTGATGTATTCTCCTATTG GTATGAGGGCTACATCCAGTTTTTTCCATTTTAATTAGATGAATAGAACTCCATATTTTCATCATCTATGGAAGCAGAGT TAATTTTCAAAGTTGGGTTAGAATTCCTCGTGTTTTCAATCTAAATTTACTATACTGGTTTTCAGATGTCAGTTGAGCAT ATAACACCACACATGTTTCAAAGCAAGATTGTTCTTCAAATTGAGGTTTCCATGCCCCCTGATATCCCAATCAGGTAACT TCCATCGACTAAAGTGACTTTGATTGTGAAATGAGTCTGTCATGACAATATATGGTTCATTGCAACAGGCATGCAATGGA ATTGGCGGAGAAAGCTGAAAAAGAGGTTATGAAGGCTGTCTCCAGTGTAGTTCATGTTGGGATCCAACTACGTTTAGGGC AACCATTTCCAGGGATCAATCACTCTTAGAACCATGTCTCCAATGTAGTTCATGTTGGGATTCAGCTACGTTTGGGGAAA CCATTTCCAGGGATCAATCATTCTTTGAACCATACTAGAAATACTATAACTTGTTTTTCTGGATATATTTTGATTTGCTG TGGGAAAGCAGATTCTTGGACCACTGCCCATTCTTTTTTGTAAACAACTTAGTTTAACAGATCAAATATTGTGAACTTAT TGGCAGCAATTTCATTGAGCCCGTAAATTTACTGAATACGGGCTCAGTAACGAACTTGCTGGAGTTACAGCTTTACAGTA GATGTCAATGACAGATTTGGATGAAATTCTCTCACGTTTCCAAATGTTTTAAGTTTATGTGTCTTTCAGTATACGTGTCA CATTGGAAGATATTGACATCTTGAGAAATATTGACATCTTCAGATTTATTCATTTGGATTTTCGAGTTGAAATTCTATGC AATCTCTGCTGTAGATAAAAGTTTTGATTTATTAAGCTAATTATGATTCAGATTAAGAGCTGTAGATAAACTACAGATAC AGAATTACAGATCCAAATTTCATGAAATAAATTATGTTGAAATTTATAAAGAAAACAAGGAATACTTTTGACTTAATTCT TAAAGAAAA
CDS sequence (LotjaGi5g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTTAGATTGAACCATCTGAATCCTATTTACAGAACATGTATCACAAGATCATCAACCTCTTCGAAATTCCTTCC CCCTGTTCTGGAATCAGTGAATTTCTTTCCACTGGAACCCTGTTTCGTTTCCCCTGAAAATCCCGCTTTCAAAATCCCCA AACGATGGCATTTTGGTCATTCTCATTCCCACGACGATCACCACCACCACCCTTACAATGTCAAGGAGGAAGGAGAGAAG ATTTTCCGGCTTGGTCTCGCCGCTGACGTTAGTTTAGCCGTTGGTAAAGCCTTCACGGGCTATGTTACCGGAAGCACCGC CATCATCGCCGACGCCGCGCATTCCGTATCTGATGTGGTGCTTAGTGGCATAGCTTTGTGGTCTTTTAAAGCTGCTCAGG CGCCTAGAGATAAAGAACACCCATATGGACATGGTAAATTTGAGACTCTAGGAGCTCTTGGAATCTCTTGTATGCTTTTA GCTACTGGGGGTGGCATTGCATGGCATGCTGTAGATATTTTGATGGGATTCTTCTCATCAGGTCCTGAAATGGTTAACCA GGCATTGGCACATGCTCATGGTGGACATCACCATGGAATTGACATGGATTATCCTATCCTTGCTCTGAGTATGACTATTG TGTCAATAGGTGTTAAAGAAGGGCTTTTCTGGATAACAAAAAGAGGTGGTGAAAAGCAAGGTAGTGGATTAATGAAAGCA AATGCATGGCATCATCGTGCAGATGCAATTTCATCAGTAGTTGCTCTCATTGGAGTTGGAGGGTCTATCCTTGGAGTGAA GTTTCTAGATCCCCTTGCTGGACTTCTTGTCTCGGGCATGATTTTAAAAGCTGGGGCTGAATCTGGTTACCAAAGTATCT TGGAACTGGTGGATGCTGCAATCCCAGCACAGGAGTTGGTTCCTATTAAACAAACAATAATGCAAGTTGACGGCGTTAGG GGATGCCATCGCTTAAGAGGAAGGAGAGCTGGTTCATCTTTGTATCTTGATGTACATATTGAGGTTGATCCTTTTTCTAG TGTTAGTGCTGCGCATGGCATTGGTGAAAATGTCCGTCATCAAATTCACAAGTCCCATCCAACTGTGACCGAAATTTTCA TACACATAGATCCTTCAATGTCACATGTTTCTACCAGCACAAAAGATGAGCTAGATAGTTGTAGCGGAGACATGAACCTG AACAGAATTGTTCCTGTTGGGGGTCATAACATTGAGGGAATTGTTTCTGATATCATTTCATCAAACTTTCCACAGATGTC AGTTGAGCATATAACACCACACATGTTTCAAAGCAAGATTGTTCTTCAAATTGAGGTTTCCATGCCCCCTGATATCCCAA TCAGGCATGCAATGGAATTGGCGGAGAAAGCTGAAAAAGAGGTTATGAAGGCTGTCTCCAGTGTAGTTCATGTTGGGATC CAACTACGTTTAGGGCAACCATTTCCAGGGATCAATCACTCTTAG
Protein sequence (LotjaGi5g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFRLNHLNPIYRTCITRSSTSSKFLPPVLESVNFFPLEPCFVSPENPAFKIPKRWHFGHSHSHDDHHHHPYNVKEEGEK IFRLGLAADVSLAVGKAFTGYVTGSTAIIADAAHSVSDVVLSGIALWSFKAAQAPRDKEHPYGHGKFETLGALGISCMLL ATGGGIAWHAVDILMGFFSSGPEMVNQALAHAHGGHHHGIDMDYPILALSMTIVSIGVKEGLFWITKRGGEKQGSGLMKA NAWHHRADAISSVVALIGVGGSILGVKFLDPLAGLLVSGMILKAGAESGYQSILELVDAAIPAQELVPIKQTIMQVDGVR GCHRLRGRRAGSSLYLDVHIEVDPFSSVSAAHGIGENVRHQIHKSHPTVTEIFIHIDPSMSHVSTSTKDELDSCSGDMNL NRIVPVGGHNIEGIVSDIISSNFPQMSVEHITPHMFQSKIVLQIEVSMPPDIPIRHAMELAEKAEKEVMKAVSSVVHVGI QLRLGQPFPGINHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 149 | 149 | - | – | |
| PANTHER | 45 | 389 | 345 | 1.6E-152 | – | |
| PANTHER | 45 | 389 | 345 | 1.6E-152 | – | |
| SUPERFAMILY | 78 | 298 | 221 | 3.4E-49 | ||
| Gene3D | 79 | 297 | 219 | 1.1E-54 | ||
| TIGRFAM | 79 | 379 | 301 | 3.5E-82 | ||
| Pfam | 83 | 297 | 215 | 2.7E-45 | ||
| Phobius | 150 | 171 | 22 | - | – | |
| Phobius | 172 | 205 | 34 | - | – | |
| Phobius | 206 | 226 | 21 | - | – | |
| Phobius | 227 | 246 | 20 | - | – | |
| Phobius | 247 | 269 | 23 | - | – | |
| Phobius | 270 | 494 | 225 | - | – | |
| SUPERFAMILY | 302 | 378 | 77 | 3.4E-19 | ||
| Pfam | 303 | 378 | 76 | 3.3E-22 | ||
| Gene3D | 303 | 380 | 78 | 2.7E-21 | ||
| SUPERFAMILY | 415 | 482 | 68 | 1.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0252500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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