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LotjaGi5g1v0253200.1

Overview

Field Value
Gene ID LotjaGi5g1v0253200
Transcript ID LotjaGi5g1v0253200.1
Lotus japonicus genome version Gifu v1.2
Description Non-symbiotic hemoglobin 1; TAIR: AT3G10520.1 hemoglobin 2; Swiss-Prot: sp|P14848|LGB2_SESRO Leghemoglobin 2; TrEMBL-Plants: tr|B3SGL5|B3SGL5_MEDTR Leghemoglobin Lb120-1; Found in the gene: LotjaGi5g1v0253200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:56222018..56226074) extracted from Lotus japonicus Gifu genome v1.2.

TTTATGTCCTTGTCTCCAAATATTCCTTAAATTTTGCATTTGTTTCCAACCCAATTAACACTGACTCTAACTCCCTAAAA AAAAATACTGACTCTAACTAACTCGTCTGAGTTGATCAGCTATGTTCCCGTGATCTTCCTCCTCCTGTTTGTCACCAATT GACCTGACTTTTTCATTCATCACAAACCACCTTCATCTATCTCTCCTTAATTGCCTCATATATAAATGTAAATCTGTTGC ATTTATTAATGGAGGATACAAATAACAAAGAGAACATGGTACCTTTCACTGAGAGGCAAGAGGCTTTAGTGGAAACCTCA TGGGAAGCATTCAAGAAAAACATTTCTCACTACAGTGTTCTCTTCTACACCTTGTGAGTTTATTTTTCTCTCAAATCTCA ATTCCTGCTTAATTAATTTCCAATGCTGTTGTTGATTTTTTGTGTTCTGGAATTAATTAATGGTTAATTAGATTTGAGTC CCTTTGTGGCGTTGGTTTGATTGATAAAAAATAGCATATTGGAGAAATCACCAGAAGTGAAGGACATGTTCTTTTTTCTA AAGGACTGTGATGGAGTGCCTCACAATAATCTTAAGCTCGAGGCTCAGGCTGAAAAACTTTTCGAAATGGTAAGTTAATG TTTGATTTTCAGTTCAAAACAAAATCGATCAAATTAATTGATATAACTTCTTTATTTGATACGATTTGTTTGTTTGGTTT GTAGACACGTGACACGGCGTTTCAACTCCGAGCAACCGGAGAAATAGATGTGACGGATGCTACATTTCAATATTTGGGTT CTGTCCATGTTCATAGAGGAGTTACGGATCACCATTTTGTGGTATGATCATACACATTACATAGCAAAATAAAATAAAAT AATGAAAATCAGATGAGATATTAAATGAACAATCCAAAGCAAGCTAAATTGATGTTAATGCTTTGTAGGTGGTTAAAGAA GCACTGCTGAAAACAATAAAGGAAGCAGTGGGGGATAAATGGAGCGAAGAAATGAGCAATGCTTGGGAAGTAGCCTATGA TAAATTGGCAATTGCAATTAAGAAGGAGATGAGTGAAAGTTAGGCTCTGGATATAAGTAAGTGTAATTATTTTTGTTCAT TGAAATTGTTTCACAAATCCATGTTATAAATGAGAGATACAAAATCTTTGATATTTGTGATTTGTAAATGAAGAAATATG GATGGTGAAAGCATCTTCTTTGAAATGTTGTCTTTCCTAAGGCCTTAAACTAGAGATCTTTACATTGCTGTCATGGCCTT GAATGGGAATTTCCTTACTACATCTTCCTTAGATAGTAAAGACCATGACAAATTCTTACAGTCTGTTTGTTATCAAAGAG AGAGTGTGTGTGTAGAGATCCAAGCAAGAGAGAGATTGGCCAGATGGAGATGCACTCTCCTCGTTTGGTATGCAATGATT TAGCTAAGAGAGAGATTTGACCTTGTTGTTTTATTTTCCTTTTTAAGCCTCACTTTCTACTTATTCTAGTCTTCTACTGC AAAAGCAAGAAAATGTATTATGTGGGTAATTTGTTTTTTTACACAAAATGCAACACTACACCTCATTCTTTCTCATCTTT TTTTATCATACTAAATAACCTATAAAAATGTCCTCACATAACTTTCAATGTTTAATACTTTATATTGCATTGTTACCATC CTAAATATTTAATTTCCTCCCAATGATGATTGGTTTGATAGAGAAATACTTGAGCAGAAAGAGACGAGAAAGAGAGAGTT AGAGAAGATGAGGAGAGACACCTTACTTTGGTGAAGGTGAGATAGAGGGATGAGAGAAGAGTGACTTTGGGACCTACCCA CTTTTTGAGATCTTCTCTAAAGTTGAAGAGATGGTGGAACAGGAATTCTTCCCTCTTTTTTCCGAAAGTGTTCTCTTGTT TACAATTGTTTCATTTTTTATTTTGGGTAAAAGAGTATTTTTATTACCACTCACACTATCTTTCTCTTATATTTATCTTC TTTCTCTCACATACTAAACAGTCTCTAAATCTACTATATTTCTTACATCTTCTCTCTACTCATCTTCTCACTTCTAAACC AAACATAGCGTAAAAGAAGGTGCCCCATGACTTTAATGTAAAAAAAATGGTACCCCATAACTTTGTGTTTTCCTATTTTT ACATTGGCTGCCAAGCTCAAAATTTATCAACTTGTTTTTAATATTTTAATTTTTTTTTCTTTCCGCATATAGTAATAATA CCCACTAGGTATAGCCACATTTCTTCTTTTTGGTATTTTTCCTTTCACCGGTACATATTCCCAAAGTCCCAAAGACTCAC CTTCTCTTCTTTTATTTCATTCCTACTTCTTCATTGAGGGTTATGATGAGCGTTTATTTTCTTGTGATTTTTCCATGTAT TTTGATATGAATTGATGCCTAGTTGTTGCATTGCTTTTACAAAACTCACGATTTTTTTGACAATTTTGCATTAGACAGGT GCCAGTCTGCCAGGTGAAAAAATGGGAAACAAGAAGAAACATGGAAAACAGAGCTTTGAGATCTAAGTTTGAAATTAGAA TTTCATGAAGCTTTTGAATGAAATTTTGGCTCCAAAAGTAAGAGAAATGAAATCCGAATTTGAGATAAAAAAAATTAGGC TAGATATAACTCATTTTCGACTATTAAAATGACCATAGAGCAAGGATCTTTCACTATAGCAAGTAGATTAACAATAATTC AACTCAAATTTGAACAAATTTTGAATTACACATGATGAAATATTTGGTGCCAAATGTGAACGAAAAAACCATATGTTTTT TTCATCAGTTAAACTCATATCTAAACCAATTGAACCGAACAAAGTGAAGTTTATGATTAGATCTATGAGGATCTAGCATA GATTAACACAAATACAAGCAAGAATCATGTAAAATTTTGAAGTGAGGGGCTGGTTCGGACATGGTGGTTGCATGTTGAAT GATGTGCTGGAGTAGAGTGCAAAAGAATGAGAGAGAAGAACAAGTTGTCTATTTCAGTGTTGATTCACCATTTTCAATAT ATATTTTGTGTGTACCACCATTGCACCTTCTAAATTAAAGTCGGGCTTGGATCCTCTTATGTGATTTTTTTTTACATCGG AAAACTGCAAAAAGAGCGACTAACAACTAAACAAACGATCCCTCCACATGAGGATCTCTAAATCCATGGTTGGTTCTTGA ATACGAAAAAAGGACGTCGTTGGCAAAGCCGCCCCCTTCCGAGCTAACCAATCTGCGAGCTTATTACAATCTCTCCCAAT CCAAATTAGAGAAATCTGTCATTGCCTGTGTAACACCTCTCGGAAGTCATCCAGAATGGGCATGAAATAACAACTTTCCT CATCACCCAGCGCTTGAGAGCCATGGAACCTGGCCACCCAGCAACCTTGCGAGTTCCGAATTAAATCATCATAGCCCATG TTCCTGATCCTGGGGTTGTAGCTTCCGTCCACACACATGTTTATCATTCCGGCCGTCGGCAACACCCATCCAATTCCTCT CATTTGTAACATCGATGTTGTCCATCACGCTCACCATCTCGTCATGCTCATGACAGATCTTTCACCAAGCCTCTTGATTG TCCATGGCGCTTCCTCGAAAATCATATTATTGCGCCACTTCCAGATCCCTGCACACACAAGCCAAGAAACGAGTGTCATT CATCCCTTGAGCCTGCCACCGGAACCATTCGCCACTATCTCTCCCGTGAAACCTAGGCCATCCCAACGCACCCACCATCT GCCAAATCTCCCTTGAGTGGGGCCAATCTCTGAGGCAGTGAAATAAATATTTATGCCAAAAAAAAAATGTCAAGTGGAAT ATTGTGTCTATCATCATCTTCATAAGTATTTAAAGGGTTTCACAAATATTTAATACGAATGAAAAGAAAAATAGACACAA AAACTCAACATAATAACACATTAGAAAGTTTTCATATGAGACATTCCTCATCCCTAAAAGTCTCACTGAAGCCGCAACCT GTTTCAATTTGAGGTTTGAGCATGATATTGTGACTTTACGCTACATCGCAAGCTGCT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0253200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGATACAAATAACAAAGAGAACATGGTACCTTTCACTGAGAGGCAAGAGGCTTTAGTGGAAACCTCATGGGAAGC ATTCAAGAAAAACATTTCTCACTACAGTGTTCTCTTCTACACCTTCATATTGGAGAAATCACCAGAAGTGAAGGACATGT TCTTTTTTCTAAAGGACTGTGATGGAGTGCCTCACAATAATCTTAAGCTCGAGGCTCAGGCTGAAAAACTTTTCGAAATG ACACGTGACACGGCGTTTCAACTCCGAGCAACCGGAGAAATAGATGTGACGGATGCTACATTTCAATATTTGGGTTCTGT CCATGTTCATAGAGGAGTTACGGATCACCATTTTGTGGTGGTTAAAGAAGCACTGCTGAAAACAATAAAGGAAGCAGTGG GGGATAAATGGAGCGAAGAAATGAGCAATGCTTGGGAAGTAGCCTATGATAAATTGGCAATTGCAATTAAGAAGGAGATG AGTGAAAGTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0253200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDTNNKENMVPFTERQEALVETSWEAFKKNISHYSVLFYTFILEKSPEVKDMFFFLKDCDGVPHNNLKLEAQAEKLFEM TRDTAFQLRATGEIDVTDATFQYLGSVHVHRGVTDHHFVVVKEALLKTIKEAVGDKWSEEMSNAWEVAYDKLAIAIKKEM SES
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF46458
6 161 156 1.13E-38
IPR009050
Gene3D
G3DSA:1.10.490.10
11 159 149 7.9E-49
IPR012292
PANTHER
PTHR22924
11 162 152 2.6E-71
IPR001032
ProSiteProfiles
PS01033
11 160 150 25.481
IPR000971
PANTHER
PTHR22924:SF92
11 162 152 2.6E-71 –
CDD
cd08923
13 159 147 3.90629E-82 –
PRINTS
PR00188
14 31 18 1.1E-35 –
Pfam
PF00042
17 126 110 3.7E-13
IPR000971
PRINTS
PR00188
39 59 21 1.1E-35 –
PRINTS
PR00188
67 95 29 1.1E-35 –
PRINTS
PR00188
132 158 27 1.1E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0019825
Molecular function Oxygen binding Interacting selectively and non-covalently with oxygen (O2).
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0253200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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