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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0254200 |
| Transcript ID | LotjaGi5g1v0254200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT5G04410.1 NAC domain containing protein 2; Swiss-Prot: sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78; TrEMBL-Plants: tr|A0A072VMT5|A0A072VMT5_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi5g1v0254200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56313049..56318402) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGAAAGTCACCCACCCGTAGCTATATAAAACCAACCCCACCCTAATCCTCTTCCTCCTAGAACCTTCTTTCTTCTCC ACCAAACTCTCTTTATAGTCTCATTCATTCCAATTGAAAATTCATAAACCCTAATTTCCCCAATTCCCCCAATTCAAACC CTCCGATTCGAAAATCCATGTCAAGCAATCTCTCACCTGGCTTCCGATTCCACCCCACCGACGAAGAACTCGTCGGCTTC TACCTCAAGCGCCGCGTCACCGGTAGACTCTTCCACGGCGACCCCATCGGCATCGTCGATGTCTACAAATACGAACCCTG GGACCTTCCATGTTAGCATCTCGATCTTCGATCTTCGATTGTTATGGTGAATCAATGAATCATTGATTGATTCGAGTTTT TTTTTGTTTTTTTTTGTTTTTTTTTTGTAGGTTTGTCGAAGATGAAGACGAGGGATTTGGAGTGGTACTTCTACACTGGG CTTGACAAGAAGTATGGGAAGGGTTCGTCCAGGACGAACCGCGCGACTGAGAAGGGTTATTGGAAGACTACCGGGAAGGA TCGTCCGGTTAATCACGCTAACCGCACCGTCGGGATGAAGAAGACGCTTGTTTATCACTTCGGTCGCGCTCCGACCGGGG CGCGGACTAACTGGGTTATGCATGAGTATAGGTCTGTTGATGAGGTGCTGGCTCAATCTGGAGTAGCGCAGGTATGTTGC AGTGATGAATTGCTTTTGTTTTTCTTTTCAATTGGGTTGTTGATAGTTGATACTGAGTTATAATAAGATTTTTTGTTGGG TGGAGAAGGATGCTTATGTGCTGTGTAGGATTTTCGAGAAGAGTGGCGCGGGGCCCAAGAATGGAGAGAAGTATGGGGCT CCTTTGATAGAGGAGGAATGGGACAATTTTGATATGATTAGTCCCTTGGCTGCTTTTGGTGATGAGTATATAAATGAAGT GCCTGATGTGGATGGTTTGTTGGAAACAAAGGACCTCGATCAGGATCAGGACCAGGTTTGTATTGTGTCCTTGATTATGG ATCTGGAACTGAAATTCTATTTATGTTTTTGTATGATTGAAATGATTATTAAGCTTATTTGCGGTGAATGTTCATTGTGA ATTAGTAACTTGATTGTTGAGTGAGCACCGGAGCATGCCATTTGTGAAGATCTGTGTACTGGAACTGGAATTCCGTATTT GTTTTTGTGTGACCGAAGTGATTATTAAGCTTCTATATTTGTGGTGAATGTTCAGTGTGAGTTACTGACTTGATTGTTGA GTGAGCCCCGGATCATGCCATTTGTTAAGATCTGTTTACTGGAACTGAAATTCTGTATTTGTTTTTGTGTGACCGAAATG ATTATTATGCTTCCATAGTTGTGGTAAATGTTCATTGTGAATTACTATCTTGGCTGTTGAGTGAGCACCGGAGCATGCCA TTTGTGAAGATCTGTGTTTTTGTTTCTTTTAATCGTGTTCTTCACTCATAATATGCCCTTCCTCAGATTTTTCATTGCTA TGCCCTTTTCTGATCTGTGATCCATGATAGGTATAGACATATTTATACCATGGCTCTTGCTTGTTTAGCTTATTTTGTTT TGCATTTTATGCGCAGCATATTCTATTCTCTATTTTTTTAAAATGTGTTGAATTAGCAGAAGCACGTGGCTCCCTTGGCC CCTTTGGCGGTTGTGGATGATAAGCTTATGAATGGAGTGCTTGATGATGGTGATTTTATGGAAACAAACGACCTCGATAA GGTTTGTATTGTGTCCCTGATGATGATCACTATGTGTCAGAACTGGAATTCCATATTTTTTTATATGAATGAAATGTTTA TTAAGCTTCCATATTTTTGGGATATATGTTCACATTGTTAGAGAGCACCAGAGCATGCCATTTAGGCAGATCTATGTTAT TTTTTGGTCATGGTCCACATTTCATAGACATGTCCTCCAGATTGTCATTTTTATGACCTTTTCTGATCAATGATAGATAT CTGCAGTTTCTCTTCTTTCTTTTTGTGACTTCCTTTCAAGCATTTATACCATGACTTTTTCTTTTGCTTATTTGTTTTGC CTTTTATGCGATTAGATTCTCTAATTTTAAAAAAATGTATTTAATTAGCAGAAGCTTGATATGCCGGCTGTTGCGATTGG GAGTGCTGATTTTCCTTCAAACTTCCATTACGGGGAGTGTAGTAGCCTTCCTGAATATTCCCAAGCATTCATCAGTGATC GGAAGCTATTGGAAGACACTATGGGAAATTCTGGGCCTGAAAATCACCAGCCTTTTAATATGGCTCAGCAATATGGTGCT GACACCAATGCAGGGAATGATGGAGGAGACACTGGTGAGCTGAGCTATGATGAAAAGCCTCTGAATTTCGATTGTCTTGA TAGTCTAGCTCAAGGCTTGAATCCCAATTGGTCTCCTCTGAATCTTGATGAAATCCTGGAAACCGATGATCTTGCAAATT TGGCAGAGGGTAATCCTGCCGAGGCAGATTCTTCTGTTATTGGCATGGTAGATGAGTATCTTTCATACACTGAGGATGAT ATTTACAAGTATATATGTTTTGATTCTCCTGGGAATGAAGGGAGTGAAATCGCCATTCCTGACCAAGGACCACAGCCCAT CCAGCAGGTTATGGTTTACTTCAGATTTTCAATGTCATTTCTCTTACTGATTTGTATTATAGCTGTTTATTAAACCTTTT CTGGGTATCGACAGAATGTGGAGGTCGAAACCCGTGATATTTCCGTGGCAAGCAAACCTGTTTTTGAAGCACAATCTAGC AATGAAGCTTCTTTAAAGCAGCATGTTCATCAGACCTCCAAGTTTGTATCAGGTAATTCATTTTACATCCTAATATCTCC TTCAGTTGCTCTTTTGGTTTGTGTTCCTGTTGATCAATATAGCTTGTAAACTGGTTCTCCTCAACTTGTTACGTTTTTCT CACATATGTGGGGAAATTCTTCTATATTTGGCAGAAGATTCAAATCCAATTGTAAAGCATGCCCATAAATTGTTGGCCAG CATGCCTGCTCCACCTGCATTTGCTTCAGAGTTTCCTACTAAGGGGTTTGCTCTTGGGCTTCATCCTGGTGCCCAGTCTT CAAATACCACCCATATAGCAGGTATGATCAGCATAACAGACATTACTTTAAGAGGCAATGCGATGGATTGGATGGTGGGC AAGAATGGAGGATTTAATGCCACCATAATGTCTTCCGGGTTTTCTCAATCTGACTTTAACTCTGATTCTTTGATGCCTAT TTCTGACTTGGTCTCTAGCAAGACTACATGTGTGTTGTCACATGGCTGTTTATACTTGATGGGGTTTTCGGTTCTGATTC TCTCACTGAGTTTCAAGATTGGAAGCTACATGTATACTGCTAAATGACAACTGTAAGGTTGGCTATGAGAGAGTAAGCTC CACCAGTCTGTTAGGATATTATTTTGTGTTGTTGATCGCGCTCATTTTATGATTAGGATCCCATGAACTTGTAGATTTCT TTGTGGTAGTTTAGTCATACTAATCTATACCTTCATTGTAACATATTCACCTTTACATACATTTTTTGTTTCAGAGTGCC AACTTAGAGTGACACGGTCTTTGATACAATTCCTAGTATATATTATTATTATTATTAATTACTTTGAATAGATGCCTGAG TTCTGATTGATAGGTTATTCATGATTTGTTTGTTTCTCTATTATCTCGTCTCCTCTCAGGGTATCCGTGGCTGTTTAAAT TTTCCGTAAAGGAAACTAAGATACTTGACTCAGCCAGGGTGAAGCTCGGTTCTATTTTGATTGATCTATTTTTTAGAAAG TTTAACATTTTCTTTTTCAAATTAATTTATGTCTTGATTTTCTTAGAAGTGGTTCAGTCACTCTTTTCGAAGAGAGTATG CTAGTATTTCTTAGATTGGATGTGCATTGCAATGTCGCCACCCGTCAGGAAACGAATTATCTCCCTTCAAACAAATGTCT TTCTCGGCATTTGAACTTGTGTTCTCAAGTCTTCTATTTTGGTTTTTGAACCTGTGCTCTCAAGTCTTACGATGTTCTAG CTTGCTTTACCTCGATGCTTTGATTGGAATAGAAAAGGTAAAACTTATTTTGGTAAAAGAATGTTATGTGAAATTTCGCG AGTTGATTTTGGTGTAGAGAGTTGAATTTTAACATGATTTTTTTTGAATAATAGTATGCTCACATACCATTTCCACCTCC ACCTTAATAAGATAAGAAGAAAAAAAAGAGAGAAATGAATAATATGATAAGTGATGTGATAGAAAATACAATGACAAATA AAAAGAAAAGAGTGAAAATAAGATAAGAGAAAATGAAATGTGAATGAATCATTACTCAATTTTATGATTATTAGTATTAT ACCCGTTTGTCCGTGCGATGCACGGATAATTTTTTACGAACTCCACTGTTAATTACAATTATTGAGTATTTGATATATAT GGAATAATACAATGATGTATTTACTAAGACGTACAATTTCAATTAGTCAAACACTTATATCTCATTATTATCTTATGTTT ATGTTTAAATGTTTTATCTTTCTTATATATATGAATTATATGAGTTTCAAATGTAAATTGTGTTTGACCCCTGTCGACGG CGCAATCTTTACGGTAAAAGATGAAAAGTTGACTGAAATGGAATAACATATTAGACTGTGAGAAAGATATTTGAAACTAA AAGAAAATATTTACACATCAAAGAGTATTATTCATATCTCACTTTCTTTCCTATCTCATTTCCACACATTTCTCTATTTT CTCTTCCTATATATCTAAGGTGGATGTGGATAAGAAGTGTCAACAAAACATTATTCAATGACCTTGCAAATGAGCTTACA TGCATTAAAATGCAAAAGACAAGTGATCCTAGTTCCTTAAAAGTGAAGTTACATGCACTAAAATCCTCCAATTAACTTAA TTGGTTTCTTAAATTCTGTAGGTAATGCCCAAAGATTTTAGCAACAATTTATTGTTATTCTGTTAACCTGTACTGGTCCA GCTATAATCACTCTCGTTAGTATAGGTGTGTTATGTGTGCTTTTGTGGTTTTTGATTATGATGATAGCTAAAAAAACAAC TCACCCTGGAATCAACTTTCATTTAGAGACCAAAATTGTTCAATTTGACTCAACTCTCAAGCATCTCTCTAGCTAGAAGA TTTTAATGATGTCACTGAAAGGAAAAGATTAAATTTTATGATTGGCAAACCACATTAAACATATACTTGGTTTTTTAAGA GATAGGATACAGAAAGAAAAAGGACAAAAAAACTGTAATACAAAGCTGATAAGATTAAAAAACATTGTTGTTCA
CDS sequence (LotjaGi5g1v0254200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGCAATCTCTCACCTGGCTTCCGATTCCACCCCACCGACGAAGAACTCGTCGGCTTCTACCTCAAGCGCCGCGT CACCGGTAGACTCTTCCACGGCGACCCCATCGGCATCGTCGATGTCTACAAATACGAACCCTGGGACCTTCCATGTTTGT CGAAGATGAAGACGAGGGATTTGGAGTGGTACTTCTACACTGGGCTTGACAAGAAGTATGGGAAGGGTTCGTCCAGGACG AACCGCGCGACTGAGAAGGGTTATTGGAAGACTACCGGGAAGGATCGTCCGGTTAATCACGCTAACCGCACCGTCGGGAT GAAGAAGACGCTTGTTTATCACTTCGGTCGCGCTCCGACCGGGGCGCGGACTAACTGGGTTATGCATGAGTATAGGTCTG TTGATGAGGTGCTGGCTCAATCTGGAGTAGCGCAGGATGCTTATGTGCTGTGTAGGATTTTCGAGAAGAGTGGCGCGGGG CCCAAGAATGGAGAGAAGTATGGGGCTCCTTTGATAGAGGAGGAATGGGACAATTTTGATATGATTAGTCCCTTGGCTGC TTTTGGTGATGAGTATATAAATGAAGTGCCTGATGTGGATGGTTTGTTGGAAACAAAGGACCTCGATCAGGATCAGGACC AGAAGCACGTGGCTCCCTTGGCCCCTTTGGCGGTTGTGGATGATAAGCTTATGAATGGAGTGCTTGATGATGGTGATTTT ATGGAAACAAACGACCTCGATAAGAAGCTTGATATGCCGGCTGTTGCGATTGGGAGTGCTGATTTTCCTTCAAACTTCCA TTACGGGGAGTGTAGTAGCCTTCCTGAATATTCCCAAGCATTCATCAGTGATCGGAAGCTATTGGAAGACACTATGGGAA ATTCTGGGCCTGAAAATCACCAGCCTTTTAATATGGCTCAGCAATATGGTGCTGACACCAATGCAGGGAATGATGGAGGA GACACTGGTGAGCTGAGCTATGATGAAAAGCCTCTGAATTTCGATTGTCTTGATAGTCTAGCTCAAGGCTTGAATCCCAA TTGGTCTCCTCTGAATCTTGATGAAATCCTGGAAACCGATGATCTTGCAAATTTGGCAGAGGGTAATCCTGCCGAGGCAG ATTCTTCTGTTATTGGCATGGTAGATGAGTATCTTTCATACACTGAGGATGATATTTACAAGTATATATGTTTTGATTCT CCTGGGAATGAAGGGAGTGAAATCGCCATTCCTGACCAAGGACCACAGCCCATCCAGCAGAATGTGGAGGTCGAAACCCG TGATATTTCCGTGGCAAGCAAACCTGTTTTTGAAGCACAATCTAGCAATGAAGCTTCTTTAAAGCAGCATGTTCATCAGA CCTCCAAGTTTGTATCAGAAGATTCAAATCCAATTGTAAAGCATGCCCATAAATTGTTGGCCAGCATGCCTGCTCCACCT GCATTTGCTTCAGAGTTTCCTACTAAGGGGTTTGCTCTTGGGCTTCATCCTGGTGCCCAGTCTTCAAATACCACCCATAT AGCAGGTATGATCAGCATAACAGACATTACTTTAAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGATTTA ATGCCACCATAATGTCTTCCGGGTTTTCTCAATCTGACTTTAACTCTGATTCTTTGATGCCTATTTCTGACTTGGTCTCT AGCAAGACTACATGTGTGTTGTCACATGGCTGTTTATACTTGATGGGGTTTTCGGTTCTGATTCTCTCACTGAGTTTCAA GATTGGAAGCTACATGTATACTGCTAAATGA
Protein sequence (LotjaGi5g1v0254200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSNLSPGFRFHPTDEELVGFYLKRRVTGRLFHGDPIGIVDVYKYEPWDLPCLSKMKTRDLEWYFYTGLDKKYGKGSSRT NRATEKGYWKTTGKDRPVNHANRTVGMKKTLVYHFGRAPTGARTNWVMHEYRSVDEVLAQSGVAQDAYVLCRIFEKSGAG PKNGEKYGAPLIEEEWDNFDMISPLAAFGDEYINEVPDVDGLLETKDLDQDQDQKHVAPLAPLAVVDDKLMNGVLDDGDF METNDLDKKLDMPAVAIGSADFPSNFHYGECSSLPEYSQAFISDRKLLEDTMGNSGPENHQPFNMAQQYGADTNAGNDGG DTGELSYDEKPLNFDCLDSLAQGLNPNWSPLNLDEILETDDLANLAEGNPAEADSSVIGMVDEYLSYTEDDIYKYICFDS PGNEGSEIAIPDQGPQPIQQNVEVETRDISVASKPVFEAQSSNEASLKQHVHQTSKFVSEDSNPIVKHAHKLLASMPAPP AFASEFPTKGFALGLHPGAQSSNTTHIAGMISITDITLRGNAMDWMVGKNGGFNATIMSSGFSQSDFNSDSLMPISDLVS SKTTCVLSHGCLYLMGFSVLILSLSFKIGSYMYTAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 571 | 571 | - | – | |
| SUPERFAMILY | 3 | 156 | 154 | 1.44E-53 | ||
| PANTHER | 4 | 207 | 204 | 2.2E-120 | – | |
| PANTHER | 4 | 207 | 204 | 2.2E-120 | – | |
| ProSiteProfiles | 5 | 156 | 152 | 52.707 | ||
| Pfam | 7 | 132 | 126 | 1.3E-33 | ||
| Gene3D | 14 | 160 | 147 | 5.4E-50 | ||
| PANTHER | 356 | 590 | 235 | 2.2E-120 | – | |
| PANTHER | 356 | 590 | 235 | 2.2E-120 | – | |
| TMHMM | 566 | 588 | 23 | - | – | |
| Phobius | 572 | 593 | 22 | - | – | |
| Phobius | 594 | 596 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0254200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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