Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0257500 |
| Transcript ID | LotjaGi5g1v0257500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Blue copper protein; TAIR: AT5G07475.1 Cupredoxin superfamily protein; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|I3SPD4|I3SPD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0257500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56632844..56636528) extracted from Lotus japonicus Gifu genome v1.2.
ACCGTTTAACCACTGCCTAGCTAACATAACCCCTTCTCACTCCACCAACTTGACAACATGCATATTCCAACGTTCCGGTG TATATAAAATAATTTTTCTTTTTTTCTTTTCTCTTTCAGAAAAAAAATCTTTGTTTTCTATATTTATTCTTGTAGGGAGT TAGGTCATCCGATAGAGAACAAACATCAAGTATTTAAGATGGACCCAGTGGTCCATGACATGTTAGTTCCCATTTCAGTT AACTCTAAATCAAACATGGAAAAGTTCCTCCTTTATTCTCTTCTCTTTTCTTTTGCAATAATCTCATGTTCAGCCACTAC CTACAATGTTGGTGATACCTCTGGCTGGGACATTAGCAGTAGTCTCGATACATGGACTGCAGATAAGAAGTTCCAGACAG GAGATGCTCTTAGTAAGTTCTTAATGCTTCCTTTCAGAACCGAAATAATTTTCTATTAGCTAGTGAAATCACACTTACAT GTCTTTTATTTGAAGTTTCAATTATATTACAGTAACACCTGAAATCATTTACTTCTTATATGAGCAATGTTATTTCCTGC AAAAGTTTTTATTCAAAATTTTGACTGGTTCGAATGTGTCTAGTTATCTATCTGTAGTCTGTACTAATGCAAATGATAAT GAACGGAACACTAATCACGAATTGAATTGAAAATTCATATGCTCAACATGTATTCAAAGTTCAAACACACTTTTTTCATG AATCCTCTAAAACTATCTGTTCTTCTTGTGACCATGTCAAACTGATTATAATTTCAAGCTTTTGAGAACAAAATTCATGA CACCCCAAGTTTTATGCAGTGAATTTATATAAATTTTAGCTTTTTTAGCTGTCGACATGTTAAAGTTACGCACTTTGATT TTTAAGTTGGATGTTGTTAGAAATTAATGACACTAGTTTGAGATTTTATTTTCCAGGTTTCCAGTATTCATCAATGTACA GTGTGGATGAGGTTACAAAAGAAAATTATGACACATGCAACACATCCAATATTTTGAAAAGCTATGGGAATGGGAACACA ACTGTGCCATTGACAAAAGCTGGGGAAAGGTATTTTATATGTGGAAACAAGTTGTATTGCCTTGGAGGGATGAAGCTCCA TGTTCATGTAGAAGATAACAAGAATACTACAATTTCACCTACTCTGGCACCTAAGGCTGTGGCAGGATCAAATCAAAGGA TTAACTCAGTTCCAGAGTCTCCTTCATCAAAGAAGAGCACACAATTTTCAAAGGGAGTGACAAGTTGTGCAGTGGATGCA CTTCAGTTAGTTTATATTGCTCTTATGGCTACTATTTATGGGATGTTGCATAATTGAGCATATAAGAACTGCAACTGAAG AAACAGCTATAGATTCATGTTTTGAGTATGTTAAAGACTTTCTGATATTGATAATGAAAAGAAAGAAAAGAGTCTTTTGC TTGGTTTGGAAGACTCATATACAGCATATGTTGTACATGTATGTTGAACAATGTTTGTATGACAGGCACATTCATATTGT TTGTATGACAGCCTTGCTGTATTGGTCCCTCATGAAAATGGTTTGCCACATATTTCAATACGTATACATATAAGGTGTGT TTGGGTAAACGATACAATTAAGCGCTTATCGCATAAGCTAATTTGAGAACTTATTGAAATAAGTTGAAAAATAAGTTATA GTTAAGCATAAGCTCTTATTCATAAGCTAATATGAATAACTTATAAAAATAAGCTCAAAATAGCTTATAGGTAGGTCATA AGCTAGAAGTTGAGACATACTCCCCCGAACACGGGCAGATAGCCAACTAAACACATTCAAATGTGGAGAATATACGAACC AGTTCATGCAAAAAGGCGCCTAAACTTACGCAAGCTTCATAACCAAAAGAAAAAGGACAAAAATATGCATATGGAACCGC ATCGCATTCAACTTGTGGGAACAAATAGTACCTAATAGCCTAATTCCATATCAACATGCAGCAGGACAAGGAAACAATGC AATTCCAAACATGCCAAAAAGATTAGAAGGAATGAAAATGCCTGAGCATTGCAATTAAGGGCATCAACAGAAATGATTAT TACCGGAGATATGTGCAAAATCCATTTAAAACTTTAACATAAACAAATTTAAAAGTAGCAAAGCAATGATCTAGACAATC AACAGCTAGTCAGGGATCCCCCCGCTGCTCCCTACTGTAGCAAATGCATCGGTGATAAGCTAACCAGAAGCGGTCTTCTT TTGCTGGAAAATGACTGCATAGACAGGAACTGCAACACCAATGCTGAAGGCGGTGAACACAGCAAGGGACATTTTCAATC CTTGATGCTTCATCCTATCCAAGTTGTACATGTGTTTCGCATGCATATAATAAGGTTCGTCATGGCCATGTCCACCTCCC ATCCTCTTCACGCCAGTAGAATGGAAACCTCTGCCCACTGTGAAAACATAATATTGTCATACACTGTTGGCATTGTAAAG TGTGAAAACTATTTTACCTAGGACTACAACAGTAAAAGGTTATGGAGCAACTATTGTCAACTAAGATTTCCTTATATTTT GCTCAACTTTAATATAAGATTGCGCAAACCAAAACCGAAGTCCAAAACACTTTAATTATAAACCAAGTGAGATCTGCAGC CAAATGCAATGGAACAAATGGAGTAGGCCAAACAAAATGCAACATTATAAGCATAGTAAAGACGTAGGCAACAAGTGATC CAAGAAACAGAAGGCACTAAAGACTTGAGAAATTTTTTAAATGCCTTAAAAATTAGTTATGGATTTTGAATTAAAAATCT GATTATGTGAGCTTAAATGGATAAGAACCATATGTATCTAGATTTAAAACACATAGTTTATATAAAAAAATAACAGTAAA ACACACACACACAAGGTTGAGGCAAGTCTCAGGAAAACACATTGAGGCAATGGAAAACTAAAATCTCAAATACTGAAATA GGATAAAGGATCATGTTGGATGCTAATTGAGTATCCCATAGTAGAAATTAGTTATTCTATTATTCATTTGTAAATGTGAT TATCCAGTTCTGCTCCTCCATATTCAACTAAACTGTTTGAACAACTTTCATAATCACTTTAACTAACCAAAATATAAAAA GTCCCAAGAACAAATCTAAACCCCCATGTCACCCTTTTTAAACCATTGAAAATTCAAAGGAAATCACTTCCATAGAATCC CCACCCCTTCATTTGATAAAGCAAAGCTCTTTCAATATTGTTATTTCCAAAATACATCAACAACTCAACAGAAGAAACTA ATCAAAGTACCAAACCATATTCACAGATGAGAAATTCAAATCTAAACCCCCATTTTGACACGACCAAGGTAATCAGAAAT TCCTAAGAAATCGTAGCCATGATCAGCATTCTTCTATTAGAGACAGACAACCTTAAAAACATGATTTCGGAGAGATTCAT GGATCGTAATTACCTGGTGCGGATTTTGACAGCGACGGTCCTGAAGAAGAAAGAAGCTTGGCCGCAGATCTGAAAGTATT GTTGAACGCCATGGCAGAAAGATGCAGGCTACACGCGACGGCGAAGAGAATTGCGCTTTTCCCTTCTTACTCCTCTGGCT ATTCAGTATATCCAATTATTAGTTAGTGGAAAAAACTATTTGACCGGTCGGTCATTGTAGTTTAATTTTTTTTATAGGCA AAAAT
CDS sequence (LotjaGi5g1v0257500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCAGTGGTCCATGACATGTTAGTTCCCATTTCAGTTAACTCTAAATCAAACATGGAAAAGTTCCTCCTTTATTC TCTTCTCTTTTCTTTTGCAATAATCTCATGTTCAGCCACTACCTACAATGTTGGTGATACCTCTGGCTGGGACATTAGCA GTAGTCTCGATACATGGACTGCAGATAAGAAGTTCCAGACAGGAGATGCTCTTAGTTTCCAGTATTCATCAATGTACAGT GTGGATGAGGTTACAAAAGAAAATTATGACACATGCAACACATCCAATATTTTGAAAAGCTATGGGAATGGGAACACAAC TGTGCCATTGACAAAAGCTGGGGAAAGGTATTTTATATGTGGAAACAAGTTGTATTGCCTTGGAGGGATGAAGCTCCATG TTCATGTAGAAGATAACAAGAATACTACAATTTCACCTACTCTGGCACCTAAGGCTGTGGCAGGATCAAATCAAAGGATT AACTCAGTTCCAGAGTCTCCTTCATCAAAGAAGAGCACACAATTTTCAAAGGGAGTGACAAGTTGTGCAGTGGATGCACT TCAGTTAGTTTATATTGCTCTTATGGCTACTATTTATGGGATGTTGCATAATTGA
Protein sequence (LotjaGi5g1v0257500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPVVHDMLVPISVNSKSNMEKFLLYSLLFSFAIISCSATTYNVGDTSGWDISSSLDTWTADKKFQTGDALSFQYSSMYS VDEVTKENYDTCNTSNILKSYGNGNTTVPLTKAGERYFICGNKLYCLGGMKLHVHVEDNKNTTISPTLAPKAVAGSNQRI NSVPESPSSKKSTQFSKGVTSCAVDALQLVYIALMATIYGMLHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| TMHMM | 23 | 45 | 23 | - | – | |
| Phobius | 23 | 44 | 22 | - | – | |
| PANTHER | 24 | 181 | 158 | 4.1E-60 | ||
| PANTHER | 24 | 181 | 158 | 4.1E-60 | – | |
| Gene3D | 39 | 148 | 110 | 2.3E-32 | ||
| SUPERFAMILY | 39 | 136 | 98 | 2.27E-29 | ||
| CDD | 40 | 136 | 97 | 7.17141E-41 | – | |
| ProSiteProfiles | 40 | 138 | 99 | 37.015 | ||
| Phobius | 45 | 177 | 133 | - | – | |
| Pfam | 53 | 130 | 78 | 3.6E-21 | ||
| MobiDBLite | 155 | 174 | 20 | - | – | |
| Phobius | 178 | 202 | 25 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 203 | 204 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. |
Expression pattern of LotjaGi5g1v0257500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…