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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0257700 |
| Transcript ID | LotjaGi5g1v0257700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Superoxide dismutase; TAIR: AT5G51100.1 Fe superoxide dismutase 2; Swiss-Prot: sp|P28759|SODF_SOYBN Superoxide dismutase [Fe], chloroplastic; TrEMBL-Plants: tr|Q53D71|Q53D71_LOTJA Superoxide dismutase; Found in the gene: LotjaGi5g1v0257700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56638018..56641762) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAATTAATCAAATAATTACATTAATTTTGGTCATATGGGTGGAAGTGGTTGACGTTTATCCTCAATCATATTCATC ACTCTAAGCACACAATATTCACTCACACAACAGAGAAAAGAAAAAGAAGAGAAATGGCATCATCAGGTGACACTTTACTC ACAATATTAATCTGATTCATCTACTTTCTTTTCATTTTCTCCGATGAGTGTGATATGATCTCATCTGATCGTGCATGGTG TTTGTTTATGAGCAGGGTTGCAAAATCTCAGCTTGCTCTACAACGAGGTTTGCTAATTTCTTCTATATCACTTTCTCTCT ACCTTGCTCGCTGCACGATTTGGTCCATTCACTTTGTGTTTTTCCTTCAGAAACCGGGTTTTGTTGTTGGAGTCGTTGTG CAGTTATAAATTTAACAAAAGCATCTATCTACCTTGAGAAGAATGTTTGGACTTGGATCTAACTTCTTTCTTTAAAATCA ATTCTGACACTTAGAAACATCTTACATAATGTTACAATTCTCACATTGGGTAGATATATGACACATATAACATTTATAAG GATAGAACAATTATCAACTCTCAAGCTAGTTTTTCGGTTGAATTATGTCTCCTAAATTCTAATCCGTTTAGCCTTTAATT AAGTTTGATCATTTAGACAAAACAGGAAGAGGAAAGTTAGATGATGAAAAGAAAATGGCAGAATTTTACTTTTTTTATTC TGGTTATATTTCTACATTATCATTTTCTCTCCATTCCAATAAACCATTGAAATTGGCATGTATTCGTTAATTATAGTGTT AATTTATTTTTATTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAGTTGAGCTAGTTTTGA TGCACAAATATGTTGTCACCATGGTTCTACCTACGTGATAGTATCATGCCAAAATCAAAATATGTTGTCATTATGGAGTC ATGTACACACCATTTTGATGTTGTGCCTACGTGTGGCCAATAATTGACACGTGTTTGGCACATCTGTATGTGACACCAAT CTTTTGTTAAATTGATATTTTTGTTGCCTTCATATGGTTAGTTCTATTATAATGACTTAATAATATTTTGACATGTGATG TGTATTAAGATATCGTAAATTTTAAAGTTTATATGTATGATATAATGAACTATGAAATTTTCAATCTCTTTCCTATATAT GCGTGTTTGGATTAACATTTATCACAATTATTTATAGCAAAAATGCATTGAAAGTGAAGTATTCATATGTTAAGACAAAA TGTTGTACACTGCAGGGTCCAAAAGTCACTCCAGCATTTCAGCTGAAGCCGCCACCATATCCACTGGTAAGATCAAATGT TTGTCATTAACTAAGTTTGAATTTAATTTTTCAAACAGACAATGCTTCTAGCAATACATTGAAAAATGTAGATTTTGGTA AAGTTTTGTCATTCGCAAATTTAATTATTTCACATTAAAACTTTGGTTAGTTTTTTTTTCGTGAAGAAGCTTAAAAATGA AATGATTCACGGTAAGTTTGATTGCTAGGTAAAATGGTGCAGAATCACTTTTTGTATATGTCATAACATTTGAGGAAATT TGGTGGTATCTGAATTTTTGTGTTGGTATAAGCCATAAGGCTTTTAAGACTGTGTTTGGATACTTGTTATAAAAAGTGGA CATAACTTTTGTTATAAAATATGAAAATAACTTTTCTCATGAATTAGATGAAAGTTTGTTTACGTTGTACTAACTCAACT ATATCCAAACAAACACAGACTGATATTGTGACAATGAAAATTTTCAGAATGCGTTGGAGCCAATTATGAGCGAGAAGACA CTTGAGTTTCATTGGGGGAAGCACCACAGAAGTTATGTGGAAAATCTGAAGAAACAAATTGTAGGGACAGAGCATGAGGG GAAGTCACTAGAAGCCATTATAGTCACATCATACAATAAGGGTGACACTCTTCCAGCTTTCAACAATGCAGCACAGGCAT GATACATTCTTGTTGTCACAAGAAGGTCTTATTCAAGTTCCCAAACCACAGCTTAGTTAGTAGTAATCTTGTTATTCTTT TACTCTGCAGGTTTGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGTGGTGGAAAGCCATCAGGGGAACTCC TAGAACTGATTGAAAGGGACTTTGGTTCATTTGAAAAATTCCTTGATGAGTTCAAGACTGCTGCTGCAACACAATTTGGT TCTGGTTGGGCTTGGCTTGCCTGTGAGTAATAACATAACCCTTTCCACCTTGCTCTCCCATTTTCTGGCTTCATTTATGA ATTATGATACATGAAACAAGTTCTTGGGTAAATCTGGCTAATATCAGTCTAATATATTTCTAAGAACATCTCTTTGTAAA TCTGGCTTATCATATTAAGTTGTTTTTACCCTTATTCCCTTTTCTTTATTGATGAAATATAGATCAGTCAAGCAAATTTG ATACTGGAAATGGAGCAAATCTTCCTTCATCTGATGAGGACAAGAAGCTAGTAGTGCTCAAGAGTCCCAATGCTGTGAAC CCCCTTGTTTGGGGTGGTTATTACGTAAGTAGGAAGAAACTAGTAACACTAGTATTCATCATTCATTACTAGTCATAGAA CATGAATGGTATTAATTGGATAATATGATCTCTTTTCCCCGATAAATTGATCAAGTTCTGATGTGATTTCATCTTAATTT CTTGCAGCCACTCATGACCATTGATGTTTGGGAGGTATCAATTAAATTTGTCTTTTGTTTGCGACTTGATTAAACTAATT TGCACACACAAGCTTTGAAATAATCATAAATAACAGCTTGCTGACTTTGTAATTTTTTCATTTTTGTGCAGCATGCTTAC TACCTTGACTTTCAGGTAATTTGTTGTTCCAAGCATTATACAAATATTACTGTCTTGCGAGTTCTTTCCAATAGATAAAT TTAACCATGAGCCATGACTATATCTTGTTATCTTCGCAGAACCGGCGCCCTGATTATATATCGGTGTTTGTCGATAAGCT TGTTTCTTGGGATGCAGCAAGCTCTAGACTTGAACGAGCTAAGGCTTTCCTTGCCAGTGCTGACATTCATCCTGCTATAT GATTTTGAATTGGAACCAGTGATTTATCCGGAAAGTGATGCTGAATTGGATGCAGAATGAGTCAATTATTTTTATCTAGA AAGTGGACTGTGGATACTTTGGTATCAAAGGTTAAATCACTTGAGTCCTGCATGTTATGTTATAAGGACAGGAAGTTTTA GTTCTCTCTGTGAGCAATAAGGTTATTTACGCCTAAACAATCAGCAAATAATGCTATGGTGCAGAACTTTATGTTTTCTA TGAGTGAATGCGTACCTTTTTCCATGAACATATATATGGTTGAAGATGCATATTCTAAAGGTGAAGAATGTTAATTTCTC CTTCACCCCTTAAAAGTGAATAGACATCTAGACATAATTTTTTTTCATCTCCGGAGCGGCAACCGTGAGAATAACTCCTC GAGGCTCGAAGATCACATTAAGTACACACAATTTTGTTCCAGTTAGACATTGCAGATAAAAAACTCATGAATAATCTTCT ATCGCGTGTATTTTCTTCAATTAATATAACTGCTCATATAAAATTGTAATATTAAGCATGTTTCTTCGTAAGGATAGGAC GATGAAATTCTATCCGACTCTATTTTAATCATGTGTTTGGTAAGTCAATTATTGGTGTAAATTTT
CDS sequence (LotjaGi5g1v0257700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCATCAGGGTTGCAAAATCTCAGCTTGCTCTACAACGAGGGTCCAAAAGTCACTCCAGCATTTCAGCTGAAGCC GCCACCATATCCACTGAATGCGTTGGAGCCAATTATGAGCGAGAAGACACTTGAGTTTCATTGGGGGAAGCACCACAGAA GTTATGTGGAAAATCTGAAGAAACAAATTGTAGGGACAGAGCATGAGGGGAAGTCACTAGAAGCCATTATAGTCACATCA TACAATAAGGGTGACACTCTTCCAGCTTTCAACAATGCAGCACAGGTTTGGAACCATGACTTCTTCTGGGAGTGCATGAA ACCAGGTGGTGGTGGAAAGCCATCAGGGGAACTCCTAGAACTGATTGAAAGGGACTTTGGTTCATTTGAAAAATTCCTTG ATGAGTTCAAGACTGCTGCTGCAACACAATTTGGTTCTGGTTGGGCTTGGCTTGCCTATCAGTCAAGCAAATTTGATACT GGAAATGGAGCAAATCTTCCTTCATCTGATGAGGACAAGAAGCTAGTAGTGCTCAAGAGTCCCAATGCTGTGAACCCCCT TGTTTGGGGTGGTTATTACCCACTCATGACCATTGATGTTTGGGAGCATGCTTACTACCTTGACTTTCAGAACCGGCGCC CTGATTATATATCGGTGTTTGTCGATAAGCTTGTTTCTTGGGATGCAGCAAGCTCTAGACTTGAACGAGCTAAGGCTTTC CTTGCCAGTGCTGACATTCATCCTGCTATATGA
Protein sequence (LotjaGi5g1v0257700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSGLQNLSLLYNEGPKVTPAFQLKPPPYPLNALEPIMSEKTLEFHWGKHHRSYVENLKKQIVGTEHEGKSLEAIIVTS YNKGDTLPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKTAAATQFGSGWAWLAYQSSKFDT GNGANLPSSDEDKKLVVLKSPNAVNPLVWGGYYPLMTIDVWEHAYYLDFQNRRPDYISVFVDKLVSWDAASSRLERAKAF LASADIHPAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 6 | 242 | 237 | 4.6E-73 | ||
| PANTHER | 18 | 239 | 222 | 6.4E-110 | – | |
| PANTHER | 18 | 239 | 222 | 6.4E-110 | – | |
| SUPERFAMILY | 21 | 108 | 88 | 3.14E-32 | ||
| Pfam | 23 | 107 | 85 | 2.2E-26 | ||
| PRINTS | 26 | 37 | 12 | 9.8E-19 | ||
| Gene3D | 40 | 106 | 67 | 2.0E-21 | ||
| PRINTS | 47 | 60 | 14 | 9.8E-19 | ||
| PRINTS | 90 | 103 | 14 | 9.8E-19 | ||
| SUPERFAMILY | 109 | 237 | 129 | 5.76E-44 | ||
| Gene3D | 111 | 248 | 138 | 1.6E-44 | ||
| Pfam | 114 | 233 | 120 | 1.8E-34 | ||
| PRINTS | 143 | 151 | 9 | 9.8E-19 | ||
| PRINTS | 197 | 209 | 13 | 9.8E-19 | ||
| ProSitePatterns | 199 | 206 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Superoxide dismutase activity | Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. | ||
| Biological process | Superoxide metabolic process | The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0257700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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