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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019833
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.050s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062359.1
n.a. PREDICTED: superoxide dismutase [Fe] gi|502134053|ref|XP_004501984.1| chr0 20953442 20960241 +
2 domain predictions
4 GO terms
Lj1g3v1182090.1
n.a. Mn-superoxide dismutase [Lotus japonicus] gi|33521626|gb|AAQ20004.1| chr1 14427586 14431671 -
2 domain predictions
4 GO terms
LotjaGi1g1v0308600.1
n.a. Superoxide dismutase; TAIR: AT3G10920.1 manganese superoxide dismutase 1; Swiss-Prot: sp|P27084|SODM_PEA Superoxide dismutase [Mn], mitochondrial; TrEMBL-Plants: tr|Q56VR0|Q56VR0_LOTJA Superoxide dismutase; Found in the gene: LotjaGi1g1v0308600 LjG1.1_chr1 75004629 75009455 -
2 domain predictions
4 GO terms
LotjaGi5g1v0257700.1
n.a. Superoxide dismutase; TAIR: AT5G51100.1 Fe superoxide dismutase 2; Swiss-Prot: sp|P28759|SODF_SOYBN Superoxide dismutase [Fe], chloroplastic; TrEMBL-Plants: tr|Q53D71|Q53D71_LOTJA Superoxide dismutase; Found in the gene: LotjaGi5g1v0257700 LjG1.1_chr5 56638018 56641762 +
2 domain predictions
4 GO terms
LotjaGi6g1v0018800.1
n.a. Superoxide dismutase; TAIR: AT5G51100.1 Fe superoxide dismutase 2; Swiss-Prot: sp|Q9LU64|SODF2_ARATH Superoxide dismutase [Fe] 2, chloroplastic; TrEMBL-Plants: tr|Q53D73|Q53D73_LOTJA Fe-superoxide dismutase 1; Found in the gene: LotjaGi6g1v0018800 LjG1.1_chr6 3400695 3405843 +
2 domain predictions
4 GO terms
LotjaGi6g1v0192100.1
n.a. Superoxide dismutase; TAIR: AT5G23310.1 Fe superoxide dismutase 3; Swiss-Prot: sp|Q9FMX0|SODF3_ARATH Superoxide dismutase [Fe] 3, chloroplastic; TrEMBL-Plants: tr|A0A151R579|A0A151R579_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0192100 LjG1.1_chr6 48842935 48849919 -
2 domain predictions
4 GO terms